AT5G04395
NAC Family

ANAC050 no apical meristem (NAM) family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0027139
Physical Location & Seq
Forward (+)
1241555 .. 1242374
820 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G04395.1

Sequence Viewer

Length: 564 bp
ATGGCTCGCGACTCCAAGAAAGCTGGTGGAGCTTTACCGGCGCCGGCGACTGCTATGGGTAATGCTGCGGCGGAGACATCGCTCCCTCCTGGCTTCCGATTTCATCCATCCGATGAAGAACTCATTAGCTATTACTTGAAGAAGAAGGTTCAGGGAAAACCCATGCGATACGATGAGATTGGAGAAGTAGATATTTGCAAGCTCGAGCCCTGGGACTTAGCAGTTATAATCTTCCTCTGTTTCTTGGCTTTAGATTTCCGTTATGTGTTAAAGACAAGGGACAAAGAATGGTTCTTCTTCAGTGCCTTGGATAAGAAGACTCGCACTGGTACTTCTATGAGCCGAGCAACAAAGCAAGGCTACTGGAAAGTCACTGGAACAGACGGGAAAATCCGCCAAGGAGGAGACGGTAAGGTGACCATTGGTACGATGAAGACTCTTGTGTTTCACAGGGGGCGTAGTCCAAACGGTCTGGGAACCGATTGGGTGATGAATGAGTATCACCTCGCTAAAAATGACGAAGGCGTTCCGGTGAGATATATGTTCTCTACAAGATCCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

187

Amino Acids

21.05

Weight (kDa)

9.47

Isoelectric Point (pI)

25.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 29 - 169 7.3e-40 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0027139)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04395
prunus_persica Prupe.2G203100_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 227
AccB1I GGYRCC 1 cut(s) 40
AccII CGCG 1 cut(s) 9
AciI CCGC 3 cut(s) 68, 71, 394
AclWI GGATC 1 cut(s) 549
AcuI CTGAAG 1 cut(s) 283
AcyI GRCGYC 1 cut(s) 41
AfaI GTAC 2 cut(s) 331, 427
AgsI TTSAA 1 cut(s) 139
AjnI CCWGG 2 cut(s) 88, 209
AluBI AGCT 4 cut(s) 23, 32, 129, 202
AluI AGCT 4 cut(s) 23, 32, 129, 202
Alw26I GTCTC 2 cut(s) 68, 399
AlwI GGATC 1 cut(s) 549
Ama87I CYCGRG 1 cut(s) 203
ApeKI GCWGC 1 cut(s) 65
Asp700I GAANNNNTTC 1 cut(s) 525
AspLEI GCGC 1 cut(s) 43
AsuHPI GGTGA 4 cut(s) 427, 494, 499, 544
AvaI CYCGRG 1 cut(s) 203
BanI GGYRCC 1 cut(s) 40
BanII GRGCYC 1 cut(s) 210
BbsI GAAGAC 2 cut(s) 323, 440
BbvI GCAGC 1 cut(s) 52
BccI CCATC 1 cut(s) 115
BciT130I CCWGG 2 cut(s) 90, 211
BcoDI GTCTC 2 cut(s) 68, 399
BfoI RGCGCY 1 cut(s) 44
BisI GCNGC 2 cut(s) 66, 69
BlsI GCNGC 2 cut(s) 67, 70
Bme1390I CCNGG 2 cut(s) 90, 211
BmeT110I CYCGRG 1 cut(s) 203
BmiI GGNNCC 2 cut(s) 42, 478
BmrFI CCNGG 2 cut(s) 90, 211
BpiI GAAGAC 2 cut(s) 323, 440
BsaHI GRCGYC 1 cut(s) 41
BsaJI CCNNGG 4 cut(s) 209, 210, 306, 397
BsaWI WCCGGW 1 cut(s) 529
Bse118I RCCGGY 2 cut(s) 37, 43
Bse1I ACTGG 3 cut(s) 331, 368, 379
BseBI CCWGG 2 cut(s) 90, 211
BseDI CCNNGG 4 cut(s) 209, 210, 306, 397
BseGI GGATG 2 cut(s) 103, 107
BseNI ACTGG 3 cut(s) 331, 368, 379
BseRI GAGGAG 1 cut(s) 417
BseXI GCAGC 1 cut(s) 52
Bsh1236I CGCG 1 cut(s) 9
BshNI GGYRCC 1 cut(s) 40
BsiHKCI CYCGRG 1 cut(s) 203
BsiSI CCGG 3 cut(s) 38, 44, 530
BslFI GGGAC 2 cut(s) 227, 293
BsmAI GTCTC 2 cut(s) 68, 399
BsmBI CGTCTC 1 cut(s) 399
BsmFI GGGAC 2 cut(s) 227, 293
BsoBI CYCGRG 1 cut(s) 203
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 1 cut(s) 554
Bsp68I TCGCGA 1 cut(s) 9
BspACI CCGC 3 cut(s) 68, 71, 394
BspFNI CGCG 1 cut(s) 9
BspLI GGNNCC 2 cut(s) 42, 478
BspPI GGATC 1 cut(s) 549
BspT107I GGYRCC 1 cut(s) 40
BsrFI RCCGGY 2 cut(s) 37, 43
BsrI ACTGG 3 cut(s) 331, 368, 379
BssAI RCCGGY 2 cut(s) 37, 43
BssECI CCNNGG 4 cut(s) 209, 210, 306, 397
BssMI GATC 1 cut(s) 554
BssNI GRCGYC 1 cut(s) 41
BssT1I CCWWGG 2 cut(s) 306, 397
Bst2UI CCWGG 2 cut(s) 90, 211
Bst4CI ACNGT 2 cut(s) 410, 470
BstACI GRCGYC 1 cut(s) 41
BstC8I GCNNGC 3 cut(s) 7, 45, 200
BstDEI CTNAG 1 cut(s) 217
BstEII GGTNACC 1 cut(s) 415
BstF5I GGATG 2 cut(s) 103, 107
BstFNI CGCG 1 cut(s) 9
BstH2I RGCGCY 1 cut(s) 44
BstHHI GCGC 1 cut(s) 43
BstKTI GATC 1 cut(s) 557
BstMAI GTCTC 2 cut(s) 68, 399
BstMBI GATC 1 cut(s) 554
BstMWI GCNNNNNNNGC 2 cut(s) 29, 38
BstNI CCWGG 2 cut(s) 90, 211
BstPI GGTNACC 1 cut(s) 415
BstSCI CCNGG 2 cut(s) 88, 209
BstUI CGCG 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 52
BstV2I GAAGAC 2 cut(s) 323, 440
BstX2I RGATCY 1 cut(s) 554
BstYI RGATCY 1 cut(s) 554
BtgZI GCGATG 1 cut(s) 63
BtsCI GGATG 2 cut(s) 103, 107
BtsIMutI CAGTG 3 cut(s) 307, 324, 372
BtuMI TCGCGA 1 cut(s) 9
Cac8I GCNNGC 3 cut(s) 7, 45, 200
CfoI GCGC 1 cut(s) 43
Cfr10I RCCGGY 2 cut(s) 37, 43
Csp6I GTAC 2 cut(s) 330, 426
CviAII CATG 1 cut(s) 163
CviQI GTAC 2 cut(s) 330, 426
DdeI CTNAG 1 cut(s) 217
DinI GGCGCC 1 cut(s) 42
DpnI GATC 1 cut(s) 556
DpnII GATC 1 cut(s) 554
EciI GGCGGA 2 cut(s) 86, 383
Eco130I CCWWGG 2 cut(s) 306, 397
Eco24I GRGCYC 1 cut(s) 210
Eco57I CTGAAG 1 cut(s) 283
Eco88I CYCGRG 1 cut(s) 203
Eco91I GGTNACC 1 cut(s) 415
EcoO65I GGTNACC 1 cut(s) 415
EcoRII CCWGG 2 cut(s) 88, 209
EcoT14I CCWWGG 2 cut(s) 306, 397
EcoT38I GRGCYC 1 cut(s) 210
EgeI GGCGCC 1 cut(s) 42
EheI GGCGCC 1 cut(s) 42
ErhI CCWWGG 2 cut(s) 306, 397
Esp3I CGTCTC 1 cut(s) 399
FaeI CATG 1 cut(s) 166
FaiI YATR 7 cut(s) 56, 164, 227, 264, 338, 540, 542
FaqI GGGAC 2 cut(s) 227, 293
FatI CATG 1 cut(s) 162
Fnu4HI GCNGC 2 cut(s) 66, 69
FokI GGATG 2 cut(s) 90, 94
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 2 cut(s) 66, 69
GlaI GCGC 1 cut(s) 42
GluI GCNGC 2 cut(s) 66, 69
HaeII RGCGCY 1 cut(s) 44
HapII CCGG 3 cut(s) 38, 44, 530
HhaI GCGC 1 cut(s) 43
Hin1I GRCGYC 1 cut(s) 41
Hin1II CATG 1 cut(s) 166
Hin6I GCGC 1 cut(s) 41
HinP1I GCGC 1 cut(s) 41
HinfI GANTC 3 cut(s) 11, 319, 436
HpaII CCGG 3 cut(s) 38, 44, 530
HphI GGTGA 4 cut(s) 427, 494, 499, 544
Hpy188I TCNGA 2 cut(s) 98, 112
Hpy188III TCNNGA 1 cut(s) 8
HpyAV CCTTC 2 cut(s) 139, 515
HpyCH4III ACNGT 2 cut(s) 410, 470
HpyCH4V TGCA 1 cut(s) 198
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 38
HpyF3I CTNAG 1 cut(s) 217
Hsp92I GRCGYC 1 cut(s) 41
Hsp92II CATG 1 cut(s) 166
HspAI GCGC 1 cut(s) 41
KasI GGCGCC 1 cut(s) 40
KroI GCCGGC 1 cut(s) 43
KroNI GCCGGC 1 cut(s) 45
Kzo9I GATC 1 cut(s) 554
LmnI GCTCC 2 cut(s) 29, 87
Lsp1109I GCAGC 1 cut(s) 52
MaeIII GTNAC 2 cut(s) 370, 415
MalI GATC 1 cut(s) 556
MboI GATC 1 cut(s) 554
MboII GAAGA 8 cut(s) 128, 151, 154, 223, 286, 289, 328, 445
MflI RGATCY 1 cut(s) 554
MhlI GDGCHC 1 cut(s) 210
Mly113I GGCGCC 1 cut(s) 41
MlyI GAGTC 3 cut(s) 5, 313, 430
MnlI CCTC 4 cut(s) 96, 245, 395, 515
MreI CGCCGGCG 1 cut(s) 43
MroNI GCCGGC 1 cut(s) 43
MroXI GAANNNNTTC 1 cut(s) 525
MseI TTAA 1 cut(s) 269
MspI CCGG 3 cut(s) 38, 44, 530
MspR9I CCNGG 2 cut(s) 90, 211
MvaI CCWGG 2 cut(s) 90, 211
MvnI CGCG 1 cut(s) 9
MwoI GCNNNNNNNGC 2 cut(s) 29, 38
NaeI GCCGGC 1 cut(s) 45
NarI GGCGCC 1 cut(s) 41
NdeII GATC 1 cut(s) 554
NgoMIV GCCGGC 1 cut(s) 43
NlaIII CATG 1 cut(s) 166
NlaIV GGNNCC 2 cut(s) 42, 478
NmeAIII GCCGAG 1 cut(s) 368
NmuCI GTSAC 2 cut(s) 370, 415
NruI TCGCGA 1 cut(s) 9
PaeR7I CTCGAG 1 cut(s) 203
PasI CCCWGGG 1 cut(s) 210
PdiI GCCGGC 1 cut(s) 45
PdmI GAANNNNTTC 1 cut(s) 525
PkrI GCNGC 2 cut(s) 67, 70
PleI GAGTC 3 cut(s) 5, 313, 430
PluTI GGCGCC 1 cut(s) 44
PpsI GAGTC 3 cut(s) 5, 313, 430
PsiI TTATAA 1 cut(s) 227
Psp6I CCWGG 2 cut(s) 88, 209
PspEI GGTNACC 1 cut(s) 415
PspGI CCWGG 2 cut(s) 88, 209
PspN4I GGNNCC 2 cut(s) 42, 478
PspXI VCTCGAGB 1 cut(s) 203
PsuI RGATCY 1 cut(s) 554
RruI TCGCGA 1 cut(s) 9
RsaI GTAC 2 cut(s) 331, 427
RsaNI GTAC 2 cut(s) 330, 426
SaqAI TTAA 1 cut(s) 269
SatI GCNGC 2 cut(s) 66, 69
Sau3AI GATC 1 cut(s) 554
SchI GAGTC 3 cut(s) 5, 313, 430
ScrFI CCNGG 2 cut(s) 90, 211
SduI GDGCHC 1 cut(s) 210
SetI ASST 7 cut(s) 25, 34, 131, 150, 204, 417, 507
SfoI GGCGCC 1 cut(s) 42
Sfr274I CTCGAG 1 cut(s) 203
SgrAI CRCCGGYG 1 cut(s) 43
SlaI CTCGAG 1 cut(s) 203
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
SsiI CCGC 3 cut(s) 68, 71, 394
SspDI GGCGCC 1 cut(s) 40
StyD4I CCNGG 2 cut(s) 88, 209
StyI CCWWGG 2 cut(s) 306, 397
TaaI ACNGT 2 cut(s) 410, 470
TaqI TCGA 1 cut(s) 204
TauI GCSGC 1 cut(s) 71
Tru1I TTAA 1 cut(s) 269
Tru9I TTAA 1 cut(s) 269
TscAI CASTG 3 cut(s) 307, 331, 379
TseFI GTSAC 2 cut(s) 370, 415
TseI GCWGC 1 cut(s) 65
Tsp45I GTSAC 2 cut(s) 370, 415
TspDTI ATGAA 4 cut(s) 92, 129, 446, 506
TspGWI ACGGA 1 cut(s) 248
TspRI CASTG 3 cut(s) 307, 331, 379
XhoI CTCGAG 1 cut(s) 203
XmnI GAANNNNTTC 1 cut(s) 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.