Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0027139

Physical Location & Seq

Genomic Coordinates Reverse (-)

23902536 .. 23903399

Gene Structure 864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G203100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGATCAGCTTCAGCAGAGCAGCAGAAGAAGAAGGTGACTTGTCACTGCCGGTGGGGTTTAGATTTCGTCCCACAGATGAAGAGCTGGTGGACTACTATTTGAAGAATAAGGTGCAGGGCATGGATTTCCATGCCGAAGGCATCATTGATGAAATTGATATCCTCAAGTTCGAGCCATGGAATTTAGTTGCGAAATCGTTGATGAAGCCGGACGATGAGAACGGGTTCTTCTTCAGTCAACCAGAGTACACCCAAAAAAAAAACACCAAGAGGAGCACCGAGGTAGGCTTTTGGAAGATAACAGGCAGAGAACATGAGATCAGGACTCGAGACAGGAGAAGAACCGTCATCGGCAAAAAGAGGATTCTGACCTTTTACATAGGTCATGGTCGCAATTCCGACAAGACCGACTGGGTCATGCATGAGTATTATATCCCTAAAGCCCATCCTAATGCCAACCAGAGATGTCGGCTTGCGTTAGAAGTTACCTCATTTGATTTTCTATTGCCTCTGCTTTCATTACATAATTGGTTTTCCAACTTAATTATATGCAGAGGGACTTCGTTCTCTGTCACTGTCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

195

Amino Acids

22.76

Weight (kDa)

7.8

Isoelectric Point (pI)

36.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0027139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04395
prunus_persica	Prupe.2G203100_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	181
AcuI	CTGAAG	1 cut(s)	217
AfaI	GTAC	1 cut(s)	248
AgsI	TTSAA	1 cut(s)	103
AluBI	AGCT	2 cut(s)	9, 85
AluI	AGCT	2 cut(s)	9, 85
Alw21I	GWGCWC	1 cut(s)	278
Alw26I	GTCTC	1 cut(s)	324
Ama87I	CYCGRG	1 cut(s)	327
ApeKI	GCWGC	1 cut(s)	20
ApoI	RAATTY	1 cut(s)	181
Asp700I	GAANNNNTTC	1 cut(s)	224
AsuHPI	GGTGA	1 cut(s)	47
AvaI	CYCGRG	1 cut(s)	327
Bbv12I	GWGCWC	1 cut(s)	278
BbvI	GCAGC	1 cut(s)	32
BccI	CCATC	1 cut(s)	453
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	324
BisI	GCNGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	22
BmeT110I	CYCGRG	1 cut(s)	327
BmrI	ACTGGG	1 cut(s)	421
BmsI	GCATC	1 cut(s)	150
BmuI	ACTGGG	1 cut(s)	421
BpuEI	CTTGAG	1 cut(s)	149
BsaJI	CCNNGG	2 cut(s)	176, 279
Bse118I	RCCGGY	1 cut(s)	49
Bse1I	ACTGG	1 cut(s)	416
BseDI	CCNNGG	2 cut(s)	176, 279
BseGI	GGATG	1 cut(s)	445
BseNI	ACTGG	1 cut(s)	416
BseRI	GAGGAG	1 cut(s)	286
BseXI	GCAGC	1 cut(s)	32
BsgI	GTGCAG	1 cut(s)	134
BsiHKAI	GWGCWC	1 cut(s)	278
BsiHKCI	CYCGRG	1 cut(s)	327
BsiSI	CCGG	2 cut(s)	50, 209
BslFI	GGGAC	2 cut(s)	54, 571
BsmAI	GTCTC	1 cut(s)	324
BsmFI	GGGAC	2 cut(s)	54, 571
BsoBI	CYCGRG	1 cut(s)	327
Bsp1286I	GDGCHC	1 cut(s)	278
Bsp143I	GATC	2 cut(s)	3, 318
Bsp19I	CCATGG	1 cut(s)	176
BspQI	GCTCTTC	1 cut(s)	75
BsrFI	RCCGGY	1 cut(s)	49
BsrI	ACTGG	1 cut(s)	416
BssAI	RCCGGY	1 cut(s)	49
BssECI	CCNNGG	2 cut(s)	176, 279
BssMI	GATC	2 cut(s)	3, 318
BssT1I	CCWWGG	1 cut(s)	176
Bst4CI	ACNGT	2 cut(s)	346, 577
Bst6I	CTCTTC	1 cut(s)	75
BstC8I	GCNNGC	1 cut(s)	474
BstDSI	CCRYGG	1 cut(s)	176
BstF5I	GGATG	1 cut(s)	445
BstKTI	GATC	2 cut(s)	6, 321
BstMAI	GTCTC	1 cut(s)	324
BstMBI	GATC	2 cut(s)	3, 318
BstV1I	GCAGC	1 cut(s)	32
BtgI	CCRYGG	1 cut(s)	176
BtsCI	GGATG	1 cut(s)	445
BtsI	GCAGTG	1 cut(s)	44
BtsIMutI	CAGTG	2 cut(s)	44, 573
Cac8I	GCNNGC	1 cut(s)	474
Cfr10I	RCCGGY	1 cut(s)	49
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	7 cut(s)	121, 131, 177, 314, 386, 418, 422
CviJI	RGCY	7 cut(s)	9, 85, 175, 208, 288, 443, 472
CviKI_1	RGCY	7 cut(s)	9, 85, 175, 208, 288, 443, 472
CviQI	GTAC	1 cut(s)	247
DpnI	GATC	2 cut(s)	5, 320
DpnII	GATC	2 cut(s)	3, 318
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
Eco130I	CCWWGG	1 cut(s)	176
Eco32I	GATATC	1 cut(s)	160
Eco57I	CTGAAG	1 cut(s)	217
Eco88I	CYCGRG	1 cut(s)	327
EcoRV	GATATC	1 cut(s)	160
EcoT14I	CCWWGG	1 cut(s)	176
EcoT22I	ATGCAT	1 cut(s)	423
ErhI	CCWWGG	1 cut(s)	176
FaeI	CATG	7 cut(s)	124, 134, 180, 317, 389, 421, 425
FaqI	GGGAC	2 cut(s)	54, 571
FatI	CATG	7 cut(s)	120, 130, 176, 313, 385, 417, 421
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	21
FokI	GGATG	1 cut(s)	432
Fsp4HI	GCNGC	1 cut(s)	21
GluI	GCNGC	1 cut(s)	21
HapII	CCGG	2 cut(s)	50, 209
Hin1II	CATG	7 cut(s)	124, 134, 180, 317, 389, 421, 425
HincII	GTYRAC	1 cut(s)	239
HindII	GTYRAC	1 cut(s)	239
HinfI	GANTC	2 cut(s)	325, 364
HpaII	CCGG	2 cut(s)	50, 209
HphI	GGTGA	1 cut(s)	47
Hpy166II	GTNNAC	3 cut(s)	91, 239, 249
Hpy188I	TCNGA	2 cut(s)	369, 400
Hpy188III	TCNNGA	2 cut(s)	322, 329
Hpy8I	GTNNAC	3 cut(s)	91, 239, 249
HpyAV	CCTTC	2 cut(s)	26, 131
HpyCH4III	ACNGT	2 cut(s)	346, 577
HpyCH4V	TGCA	3 cut(s)	115, 421, 552
Hsp92II	CATG	7 cut(s)	124, 134, 180, 317, 389, 421, 425
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 318
LguI	GCTCTTC	1 cut(s)	75
LmnI	GCTCC	1 cut(s)	273
Lsp1109I	GCAGC	1 cut(s)	32
LweI	GCATC	1 cut(s)	150
MaeIII	GTNAC	5 cut(s)	35, 42, 484, 571, 577
MalI	GATC	2 cut(s)	5, 320
MboI	GATC	2 cut(s)	3, 318
MboII	GAAGA	8 cut(s)	38, 41, 92, 115, 220, 223, 307, 351
MhlI	GDGCHC	1 cut(s)	278
MluCI	AATT	5 cut(s)	153, 181, 394, 526, 543
MlyI	GAGTC	1 cut(s)	319
MmeI	TCCRAC	2 cut(s)	423, 561
MnlI	CCTC	7 cut(s)	173, 264, 274, 354, 499, 519, 548
Mph1103I	ATGCAT	1 cut(s)	423
MroXI	GAANNNNTTC	1 cut(s)	224
MseI	TTAA	1 cut(s)	542
MslI	CAYNNNNRTG	1 cut(s)	450
MspI	CCGG	2 cut(s)	50, 209
NcoI	CCATGG	1 cut(s)	176
NdeII	GATC	2 cut(s)	3, 318
NlaIII	CATG	7 cut(s)	124, 134, 180, 317, 389, 421, 425
NmuCI	GTSAC	4 cut(s)	35, 42, 571, 577
NsiI	ATGCAT	1 cut(s)	423
PaeR7I	CTCGAG	1 cut(s)	327
PciSI	GCTCTTC	1 cut(s)	75
PdmI	GAANNNNTTC	1 cut(s)	224
PfeI	GAWTC	1 cut(s)	364
PflFI	GACNNNGTC	1 cut(s)	413
PkrI	GCNGC	1 cut(s)	22
PleI	GAGTC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	319
PsyI	GACNNNGTC	1 cut(s)	413
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
RseI	CAYNNNNRTG	1 cut(s)	450
SapI	GCTCTTC	1 cut(s)	75
SaqAI	TTAA	1 cut(s)	542
SatI	GCNGC	1 cut(s)	21
Sau3AI	GATC	2 cut(s)	3, 318
SchI	GAGTC	1 cut(s)	319
SduI	GDGCHC	1 cut(s)	278
SetI	ASST	8 cut(s)	11, 37, 87, 114, 285, 374, 385, 491
SfaNI	GCATC	1 cut(s)	150
Sfr274I	CTCGAG	1 cut(s)	327
SlaI	CTCGAG	1 cut(s)	327
SmiMI	CAYNNNNRTG	1 cut(s)	450
SmlI	CTYRAG	2 cut(s)	164, 327
SmoI	CTYRAG	2 cut(s)	164, 327
Sse9I	AATT	5 cut(s)	153, 181, 394, 526, 543
StyI	CCWWGG	1 cut(s)	176
TaaI	ACNGT	2 cut(s)	346, 577
TaqI	TCGA	2 cut(s)	171, 328
TaqII	GACCGA	1 cut(s)	422
TasI	AATT	5 cut(s)	153, 181, 394, 526, 543
TatI	WGTACW	1 cut(s)	246
TfiI	GAWTC	1 cut(s)	364
Tru1I	TTAA	1 cut(s)	542
Tru9I	TTAA	1 cut(s)	542
TscAI	CASTG	2 cut(s)	51, 580
TseFI	GTSAC	4 cut(s)	35, 42, 571, 577
TseI	GCWGC	1 cut(s)	20
Tsp45I	GTSAC	4 cut(s)	35, 42, 571, 577
TspDTI	ATGAA	4 cut(s)	93, 165, 218, 507
TspRI	CASTG	2 cut(s)	51, 580
Tth111I	GACNNNGTC	1 cut(s)	413
XapI	RAATTY	1 cut(s)	181
XhoI	CTCGAG	1 cut(s)	327
XmnI	GAANNNNTTC	1 cut(s)	224
Zsp2I	ATGCAT	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.