AT5G10695

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0018718
Physical Location & Seq
Forward (+)
3377652 .. 3378221
570 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G10695.2

Sequence Viewer

Length: 204 bp
ATGTGTTTGGTGTTCGTGTGTGATCAGGACGAGAGGGTGATCGGAAGGTACGCAGCTCCTGGAGCGTGTCCGTACTGCGGAGGAGCGGTTCAAGTGGTTGACGTAAATAGCCAGTGGAGATTCTGCTTCGTTCCTCTCTCTAATAAATCCAAACGTCGTCATCTCTGTTCCACTTGCGGCAAACGACTCATCGTCCATGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.45

Weight (kDa)

9.01

Isoelectric Point (pI)

55.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018718)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10695 AT5G10695
malus_domestica MD09G1160500.v1.1 MD17G1146300.v1.1
prunus_persica Prupe.3G019100_v2.0.a1
pyrus_communis pycom09g07910
rosa_chinensis RchiOBHm_Chr2g0149751
rosa_roxburghii Rroxscaffold_2G00097750
rosa_wichuraiana Rw2G038750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 86
AciI CCGC 3 cut(s) 78, 86, 177
AfaI GTAC 2 cut(s) 50, 74
AfiI CCNNNNNNNGG 1 cut(s) 77
AgsI TTSAA 1 cut(s) 92
AhdI GACNNNNNGTC 1 cut(s) 191
AjnI CCWGG 1 cut(s) 58
AloI GAACNNNNNNTCC 2 cut(s) 72, 104
AluBI AGCT 1 cut(s) 56
AluI AGCT 1 cut(s) 56
AlwNI CAGNNNCTG 1 cut(s) 59
ApeKI GCWGC 1 cut(s) 53
AsuHPI GGTGA 1 cut(s) 49
BbvI GCAGC 1 cut(s) 65
BciT130I CCWGG 1 cut(s) 60
BclI TGATCA 1 cut(s) 22
BisI GCNGC 2 cut(s) 54, 178
BlsI GCNGC 2 cut(s) 55, 179
Bme1390I CCNGG 1 cut(s) 60
BmeRI GACNNNNNGTC 1 cut(s) 191
BmrFI CCNGG 1 cut(s) 60
BpmI CTGGAG 1 cut(s) 81
BsaJI CCNNGG 1 cut(s) 196
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
Bsc4I CCNNNNNNNGG 1 cut(s) 77
Bse1I ACTGG 1 cut(s) 112
BseBI CCWGG 1 cut(s) 60
BseDI CCNNGG 1 cut(s) 196
BseLI CCNNNNNNNGG 1 cut(s) 77
BseNI ACTGG 1 cut(s) 112
BseRI GAGGAG 1 cut(s) 96
BseXI GCAGC 1 cut(s) 65
BslI CCNNNNNNNGG 1 cut(s) 77
Bsp143I GATC 2 cut(s) 22, 39
Bsp19I CCATGG 1 cut(s) 196
BspACI CCGC 3 cut(s) 78, 86, 177
BsrBI CCGCTC 1 cut(s) 86
BsrI ACTGG 1 cut(s) 112
BssECI CCNNGG 1 cut(s) 196
BssMI GATC 2 cut(s) 22, 39
BssT1I CCWWGG 1 cut(s) 196
Bst2UI CCWGG 1 cut(s) 60
BstDSI CCRYGG 1 cut(s) 196
BstKTI GATC 2 cut(s) 25, 42
BstMBI GATC 2 cut(s) 22, 39
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstNI CCWGG 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 58
BstV1I GCAGC 1 cut(s) 65
BtgI CCRYGG 1 cut(s) 196
BtsIMutI CAGTG 1 cut(s) 119
CaiI CAGNNNCTG 1 cut(s) 59
Csp6I GTAC 2 cut(s) 49, 73
CviAII CATG 1 cut(s) 197
CviJI RGCY 3 cut(s) 56, 111, 201
CviKI_1 RGCY 3 cut(s) 56, 111, 201
CviQI GTAC 2 cut(s) 49, 73
DpnI GATC 2 cut(s) 24, 41
DpnII GATC 2 cut(s) 22, 39
DriI GACNNNNNGTC 1 cut(s) 191
Eam1105I GACNNNNNGTC 1 cut(s) 191
Eco130I CCWWGG 1 cut(s) 196
EcoRII CCWGG 1 cut(s) 58
EcoT14I CCWWGG 1 cut(s) 196
ErhI CCWWGG 1 cut(s) 196
FaeI CATG 1 cut(s) 200
FaiI YATR 1 cut(s) 198
FatI CATG 1 cut(s) 196
FbaI TGATCA 1 cut(s) 22
Fnu4HI GCNGC 2 cut(s) 54, 178
Fsp4HI GCNGC 2 cut(s) 54, 178
GluI GCNGC 2 cut(s) 54, 178
GsuI CTGGAG 1 cut(s) 81
Hin1II CATG 1 cut(s) 200
HincII GTYRAC 1 cut(s) 100
HindII GTYRAC 1 cut(s) 100
HinfI GANTC 2 cut(s) 120, 186
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 1 cut(s) 44
Hpy188III TCNNGA 1 cut(s) 26
Hpy8I GTNNAC 1 cut(s) 100
Hpy99I CGWCG 1 cut(s) 159
HpyAV CCTTC 1 cut(s) 39
HpyCH4IV ACGT 2 cut(s) 102, 154
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpySE526I ACGT 2 cut(s) 102, 154
Hsp92II CATG 1 cut(s) 200
Ksp22I TGATCA 1 cut(s) 22
Kzo9I GATC 2 cut(s) 22, 39
LmnI GCTCC 3 cut(s) 61, 62, 83
LpnPI CCDG 4 cut(s) 11, 45, 72, 125
Lsp1109I GCAGC 1 cut(s) 65
MaeII ACGT 2 cut(s) 102, 154
MalI GATC 2 cut(s) 24, 41
MbiI CCGCTC 1 cut(s) 86
MboI GATC 2 cut(s) 22, 39
MlyI GAGTC 1 cut(s) 180
MnlI CCTC 3 cut(s) 27, 74, 144
MspR9I CCNGG 1 cut(s) 60
MvaI CCWGG 1 cut(s) 60
MwoI GCNNNNNNNGC 1 cut(s) 62
NcoI CCATGG 1 cut(s) 196
NdeII GATC 2 cut(s) 22, 39
NlaIII CATG 1 cut(s) 200
PfeI GAWTC 1 cut(s) 120
PfoI TCCNGGA 1 cut(s) 58
PkrI GCNGC 2 cut(s) 55, 179
PleI GAGTC 1 cut(s) 180
PpsI GAGTC 1 cut(s) 180
Psp6I CCWGG 1 cut(s) 58
PspGI CCWGG 1 cut(s) 58
PstNI CAGNNNCTG 1 cut(s) 59
RsaI GTAC 2 cut(s) 50, 74
RsaNI GTAC 2 cut(s) 49, 73
SatI GCNGC 2 cut(s) 54, 178
Sau3AI GATC 2 cut(s) 22, 39
SchI GAGTC 1 cut(s) 180
ScrFI CCNGG 1 cut(s) 60
SetI ASST 4 cut(s) 50, 58, 105, 157
SgeI CNNG 9 cut(s) 28, 38, 43, 71, 72, 78, 104, 124, 186
SsiI CCGC 3 cut(s) 78, 86, 177
StyD4I CCNGG 1 cut(s) 58
StyI CCWWGG 1 cut(s) 196
TaiI ACGT 2 cut(s) 105, 157
TauI GCSGC 1 cut(s) 180
TfiI GAWTC 1 cut(s) 120
TscAI CASTG 1 cut(s) 119
TseI GCWGC 1 cut(s) 53
TspGWI ACGGA 1 cut(s) 60
TspRI CASTG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.