Rroxscaffold_2G00097750

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0018718
Physical Location & Seq
Forward (+)
18957578 .. 18957784
207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00097750.1

Sequence Viewer

Length: 207 bp
ATGGGTGTGTTACAAGTGTTTGATCTGCAAGAAAAAGTTAAAGGAAAGAGTGGAGCTCCGTCAGCTTGCCCTTACTGCGCAGGCCCCGTTTTGGTTTGGGACTTTGATGCCGACTTGGTCTTTTTCTGTTGTATACCTATTTCCCACAAAACCAAGAGGAAGTTCTACTGCACCATTTGCTCCAGGCGCCTAGTTCCGGTCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

7.57

Weight (kDa)

8.85

Isoelectric Point (pI)

69.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018718)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10695 AT5G10695
malus_domestica MD09G1160500.v1.1 MD17G1146300.v1.1
prunus_persica Prupe.3G019100_v2.0.a1
pyrus_communis pycom09g07910
rosa_chinensis RchiOBHm_Chr2g0149751
rosa_roxburghii Rroxscaffold_2G00097750
rosa_wichuraiana Rw2G038750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 79
AccB1I GGYRCC 1 cut(s) 186
AccI GTMKAC 1 cut(s) 133
AcyI GRCGYC 1 cut(s) 187
AfiI CCNNNNNNNGG 2 cut(s) 91, 196
AjnI CCWGG 1 cut(s) 182
AjuI GAANNNNNNNTTGG 2 cut(s) 146, 178
AluBI AGCT 2 cut(s) 56, 65
AluI AGCT 2 cut(s) 56, 65
Alw21I GWGCWC 1 cut(s) 58
AoxI GGCC 1 cut(s) 82
AspLEI GCGC 2 cut(s) 80, 189
AspS9I GGNCC 1 cut(s) 83
BanI GGYRCC 1 cut(s) 186
BanII GRGCYC 1 cut(s) 58
Bbv12I GWGCWC 1 cut(s) 58
BciT130I CCWGG 1 cut(s) 184
BfaI CTAG 1 cut(s) 191
BfoI RGCGCY 1 cut(s) 190
Bme1390I CCNGG 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 83
BmiI GGNNCC 2 cut(s) 85, 188
BmrFI CCNGG 1 cut(s) 184
BmsI GCATC 1 cut(s) 97
BplI GAGNNNNNCTC 2 cut(s) 40, 72
BpmI CTGGAG 1 cut(s) 166
BsaHI GRCGYC 1 cut(s) 187
BsaWI WCCGGW 1 cut(s) 196
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 196
BseBI CCWGG 1 cut(s) 184
BseLI CCNNNNNNNGG 2 cut(s) 91, 196
BsgI GTGCAG 1 cut(s) 154
BshFI GGCC 1 cut(s) 84
BshNI GGYRCC 1 cut(s) 186
BsiHKAI GWGCWC 1 cut(s) 58
BsiSI CCGG 1 cut(s) 197
BslFI GGGAC 1 cut(s) 113
BslI CCNNNNNNNGG 2 cut(s) 91, 196
BsmFI GGGAC 1 cut(s) 113
BsnI GGCC 1 cut(s) 84
Bsp1286I GDGCHC 1 cut(s) 58
Bsp143I GATC 1 cut(s) 22
BspANI GGCC 1 cut(s) 84
BspLI GGNNCC 2 cut(s) 85, 188
BspT107I GGYRCC 1 cut(s) 186
BssMI GATC 1 cut(s) 22
BssNAI GTATAC 1 cut(s) 134
BssNI GRCGYC 1 cut(s) 187
Bst1107I GTATAC 1 cut(s) 134
Bst2UI CCWGG 1 cut(s) 184
BstACI GRCGYC 1 cut(s) 187
BstAPI GCANNNNNTGC 1 cut(s) 177
BstC8I GCNNGC 2 cut(s) 67, 82
BstH2I RGCGCY 1 cut(s) 190
BstHHI GCGC 2 cut(s) 80, 189
BstKTI GATC 1 cut(s) 25
BstMBI GATC 1 cut(s) 22
BstMWI GCNNNNNNNGC 4 cut(s) 62, 75, 177, 186
BstNI CCWGG 1 cut(s) 184
BstSCI CCNGG 1 cut(s) 182
BstZ17I GTATAC 1 cut(s) 134
BsuRI GGCC 1 cut(s) 84
Cac8I GCNNGC 2 cut(s) 67, 82
CfoI GCGC 2 cut(s) 80, 189
Cfr13I GGNCC 1 cut(s) 83
CviJI RGCY 3 cut(s) 56, 65, 84
CviKI_1 RGCY 3 cut(s) 56, 65, 84
DinI GGCGCC 1 cut(s) 188
DpnI GATC 1 cut(s) 24
DpnII GATC 1 cut(s) 22
Ecl136II GAGCTC 1 cut(s) 56
Eco24I GRGCYC 1 cut(s) 58
Eco53kI GAGCTC 1 cut(s) 56
EcoICRI GAGCTC 1 cut(s) 56
EcoO109I RGGNCCY 1 cut(s) 83
EcoRII CCWGG 1 cut(s) 182
EcoT38I GRGCYC 1 cut(s) 58
EgeI GGCGCC 1 cut(s) 188
EheI GGCGCC 1 cut(s) 188
FaiI YATR 1 cut(s) 134
FaqI GGGAC 1 cut(s) 113
FblI GTMKAC 1 cut(s) 133
FriOI GRGCYC 1 cut(s) 58
FspBI CTAG 1 cut(s) 191
FspI TGCGCA 1 cut(s) 79
GlaI GCGC 2 cut(s) 79, 188
GsuI CTGGAG 1 cut(s) 166
HaeII RGCGCY 1 cut(s) 190
HaeIII GGCC 1 cut(s) 84
HapII CCGG 1 cut(s) 197
HhaI GCGC 2 cut(s) 80, 189
Hin1I GRCGYC 1 cut(s) 187
Hin6I GCGC 2 cut(s) 78, 187
HinP1I GCGC 2 cut(s) 78, 187
HpaII CCGG 1 cut(s) 197
Hpy166II GTNNAC 1 cut(s) 134
Hpy188III TCNNGA 1 cut(s) 204
Hpy8I GTNNAC 1 cut(s) 134
HpyCH4V TGCA 2 cut(s) 28, 171
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 75, 177, 186
Hsp92I GRCGYC 1 cut(s) 187
HspAI GCGC 2 cut(s) 78, 187
KasI GGCGCC 1 cut(s) 186
Kzo9I GATC 1 cut(s) 22
LmnI GCTCC 3 cut(s) 53, 61, 185
LpnPI CCDG 3 cut(s) 66, 169, 196
LweI GCATC 1 cut(s) 97
MaeI CTAG 1 cut(s) 191
MaeIII GTNAC 1 cut(s) 9
MalI GATC 1 cut(s) 24
MboI GATC 1 cut(s) 22
MhlI GDGCHC 1 cut(s) 58
Mly113I GGCGCC 1 cut(s) 187
MnlI CCTC 1 cut(s) 150
MseI TTAA 1 cut(s) 39
MspI CCGG 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 184
MvaI CCWGG 1 cut(s) 184
MwoI GCNNNNNNNGC 4 cut(s) 62, 75, 177, 186
NarI GGCGCC 1 cut(s) 187
NdeII GATC 1 cut(s) 22
NlaIV GGNNCC 2 cut(s) 85, 188
NsbI TGCGCA 1 cut(s) 79
PflFI GACNNNGTC 1 cut(s) 116
PluTI GGCGCC 1 cut(s) 190
Psp124BI GAGCTC 1 cut(s) 58
Psp6I CCWGG 1 cut(s) 182
PspGI CCWGG 1 cut(s) 182
PspN4I GGNNCC 2 cut(s) 85, 188
PspPI GGNCC 1 cut(s) 83
PsyI GACNNNGTC 1 cut(s) 116
SacI GAGCTC 1 cut(s) 58
SaqAI TTAA 1 cut(s) 39
Sau3AI GATC 1 cut(s) 22
Sau96I GGNCC 1 cut(s) 83
ScrFI CCNGG 1 cut(s) 184
SduI GDGCHC 1 cut(s) 58
SetI ASST 3 cut(s) 58, 67, 139
SfaNI GCATC 1 cut(s) 97
SfoI GGCGCC 1 cut(s) 188
SspDI GGCGCC 1 cut(s) 186
SspMI CTAG 1 cut(s) 191
SstI GAGCTC 1 cut(s) 58
StyD4I CCNGG 1 cut(s) 182
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TspGWI ACGGA 1 cut(s) 48
Tth111I GACNNNGTC 1 cut(s) 116
XmiI GTMKAC 1 cut(s) 133
XspI CTAG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.