AT5G12250

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
3960938 .. 3963624
2687 bp
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UTR
Exon/CDS
Intron
AT5G12250.1

Sequence Viewer

Length: 1350 bp
ATGAGAGAAATCCTTCACATTCAAGGTGGTCAATGTGGGAACCAGATTGGTTCCAAGTTCTGGGAAGTTGTATGTGATGAGCATGGTATTGATCCCACTGGTCGTTACGTTGGAAACTCTGATCTGCAGTTGGAGCGTGTCAATGTTTACTATAACGAGGCATCCTGCGGAAGATATGTTCCCCGTGCAATTCTCATGGATCTTGAGCCTGGTACTATGGACAGTGTCAGAACTGGACCTTATGGTCAAATCTTCAGGCCTGACAACTTTGTTTTCGGGCAATCTGGTGCTGGAAACAACTGGGCTAAAGGGCATTACACTGAAGGAGCTGAGCTTATTGATGCTGTACTCGATGTTGTACGCAAAGAGGCTGAGAATTGCGACTGTCTTCAAGGTTTCCAAGTATGTCACTCACTTGGTGGAGGCACCGGGTCTGGAATGGGAACTCTGCTCATATCTAAGATCAGGGAAGAGTATCCTGATAGAATGATGCTTACATTTTCTGTCTTCCCATCACCAAAGGTCTCTGACACAGTGGTTGAGCCATACAATGCGACACTTTCAGTTCATCAGCTGGTGGAAAATGCTGATGAGTGTATGGTTTTGGACAATGAAGCCCTTTACGACATCTGTTTTAGAACACTTAAGCTTACCACTCCTAGCTTTGGTGATCTGAATCATCTTATCTCTGCAACCATGAGTGGAGTTACATGCTGTCTTAGGTTCCCGGGTCAGCTCAACTCTGATCTGAGGAAGCTCGCAGTGAACCTCATTCCTTTCCCTCGTCTCCACTTTTTCATGGTTGGTTTTGCCCCTCTCACCTCCCGTGGGTCTCAGCAGTACCGTGCACTCACTGTCCCTGAGCTGACCCAACAGATGTGGGATTCAAAGAACATGATGTGCGCAGCAGACCCGCGCCACGGGCGGTACCTAACTGCCTCGGCCATGTTCCGTGGCAAGATGAGCACAAAAGAAGTGGACGAGCAGATGATAAACGTACAGAACAAAAACTCTTCCTACTTTGTGGAATGGATTCCAAACAACGTGAAGTCAAGCGTCTGTGACATAGCTCCCCGAGGTCTCTCAATGGCATCGACATTTATTGGGAATTCCACATCGATCCAAGAGATGTTTAGGCGGGTGAGCGAGCAGTTCACTGCTATGTTCAGGAGGAAAGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGACGAGATGGAGTTTACTGAAGCTGAGAGCAACATGAACGATCTAGTCTCAGAGTACCAGCAATACCAAGACGCAACTGCAGATGACGAAGGCGAGTATGAAGAAGACGAGGATGAAGAAGAGATATTGGATCATGAGTGA

Protein Analysis

449

Amino Acids

50.59

Weight (kDa)

4.72

Isoelectric Point (pI)

36.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tubulin PF00091 3 - 211 7.3e-65 Tubulin/FtsZ family, GTPase domain
Tubulin_C PF03953 261 - 382 1e-39 Tubulin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0026685)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G12250
prunus_persica Prupe.7G028500_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 243
Acc16I TGCGCA 1 cut(s) 904
Acc65I GGTACC 1 cut(s) 927
AccB1I GGYRCC 2 cut(s) 425, 927
AccB7I CCANNNNNTGG 1 cut(s) 60
AccII CGCG 1 cut(s) 916
AciI CCGC 4 cut(s) 168, 914, 925, 1138
AclWI GGATC 4 cut(s) 86, 207, 1114, 1347
AcoI YGGCCR 1 cut(s) 942
AcsI RAATTY 1 cut(s) 1108
AcuI CTGAAG 3 cut(s) 238, 342, 1248
AdeI CACNNNGTG 1 cut(s) 419
AfaI GTAC 8 cut(s) 214, 348, 360, 842, 929, 999, 1193, 1265
AfiI CCNNNNNNNGG 4 cut(s) 60, 665, 828, 920
AflII CTTAAG 1 cut(s) 644
AgsI TTSAA 3 cut(s) 23, 392, 888
AjnI CCWGG 1 cut(s) 208
AloI GAACNNNNNNTCC 2 cut(s) 162, 194
Alw21I GWGCWC 2 cut(s) 850, 968
Alw26I GTCTC 5 cut(s) 529, 791, 837, 1085, 1261
Alw44I GTGCAC 1 cut(s) 846
AlwI GGATC 4 cut(s) 86, 207, 1114, 1347
Ama87I CYCGRG 2 cut(s) 727, 1074
AoxI GGCC 2 cut(s) 257, 942
ApaLI GTGCAC 1 cut(s) 846
ApeKI GCWGC 1 cut(s) 905
ApoI RAATTY 1 cut(s) 1108
Asp700I GAANNNNTTC 3 cut(s) 12, 1032, 1178
Asp718I GGTACC 1 cut(s) 927
AspLEI GCGC 2 cut(s) 905, 918
AspS9I GGNCC 1 cut(s) 236
AsuC2I CCSGG 3 cut(s) 430, 728, 729
AsuHPI GGTGA 5 cut(s) 507, 680, 811, 1153, 1211
AvaI CYCGRG 2 cut(s) 727, 1074
AvaII GGWCC 1 cut(s) 236
BaeGI GKGCMC 1 cut(s) 850
BaeI ACNNNNGTAYC 2 cut(s) 1183, 1216
BanI GGYRCC 2 cut(s) 425, 927
BbsI GAAGAC 3 cut(s) 380, 499, 1320
Bbv12I GWGCWC 2 cut(s) 850, 968
BbvI GCAGC 1 cut(s) 917
BccI CCATC 2 cut(s) 520, 1210
BciT130I CCWGG 1 cut(s) 210
BciVI GTATCC 1 cut(s) 486
BcnI CCSGG 3 cut(s) 430, 728, 729
BcoDI GTCTC 5 cut(s) 529, 791, 837, 1085, 1261
BfaI CTAG 2 cut(s) 660, 1253
BfmI CTRYAG 2 cut(s) 125, 1287
BfrI CTTAAG 1 cut(s) 644
BfuI GTATCC 1 cut(s) 486
BisI GCNGC 1 cut(s) 906
BlpI GCTNAGC 1 cut(s) 330
BlsI GCNGC 1 cut(s) 907
Bme1390I CCNGG 4 cut(s) 210, 430, 728, 729
Bme18I GGWCC 1 cut(s) 236
BmeT110I CYCGRG 2 cut(s) 727, 1074
BmgT120I GGNCC 1 cut(s) 236
BmiI GGNNCC 5 cut(s) 41, 52, 427, 725, 929
BmrFI CCNGG 4 cut(s) 210, 430, 728, 729
BmrI ACTGGG 1 cut(s) 310
BmsI GCATC 4 cut(s) 170, 331, 480, 1100
BmuI ACTGGG 1 cut(s) 310
BpiI GAAGAC 3 cut(s) 380, 499, 1320
Bpu10I CCTNAGC 1 cut(s) 861
Bpu1102I GCTNAGC 1 cut(s) 330
BpuEI CTTGAG 1 cut(s) 224
BpuMI CCSGG 3 cut(s) 430, 728, 729
Bsa29I ATCGAT 1 cut(s) 1118
BsaBI GATNNNNATC 1 cut(s) 675
BsaI GGTCTC 3 cut(s) 529, 837, 1085
BsaJI CCNNGG 6 cut(s) 727, 826, 919, 939, 952, 1075
Bsc4I CCNNNNNNNGG 4 cut(s) 60, 665, 828, 920
Bse1I ACTGG 3 cut(s) 103, 238, 305
Bse8I GATNNNNATC 1 cut(s) 675
BseBI CCWGG 1 cut(s) 210
BseCI ATCGAT 1 cut(s) 1118
BseDI CCNNGG 6 cut(s) 727, 826, 919, 939, 952, 1075
BseGI GGATG 2 cut(s) 161, 1327
BseJI GATNNNNATC 1 cut(s) 675
BseLI CCNNNNNNNGG 4 cut(s) 60, 665, 828, 920
BseMII CTCAG 7 cut(s) 321, 363, 740, 848, 852, 1224, 1272
BseNI ACTGG 3 cut(s) 103, 238, 305
BseSI GKGCMC 1 cut(s) 850
BseXI GCAGC 1 cut(s) 917
Bsh1236I CGCG 1 cut(s) 916
BshFI GGCC 2 cut(s) 259, 944
BshNI GGYRCC 2 cut(s) 425, 927
BshVI ATCGAT 1 cut(s) 1118
BsiHKAI GWGCWC 2 cut(s) 850, 968
BsiHKCI CYCGRG 2 cut(s) 727, 1074
BsiSI CCGG 2 cut(s) 429, 728
BslFI GGGAC 1 cut(s) 842
BslI CCNNNNNNNGG 4 cut(s) 60, 665, 828, 920
BsmAI GTCTC 5 cut(s) 529, 791, 837, 1085, 1261
BsmBI CGTCTC 1 cut(s) 791
BsmFI GGGAC 1 cut(s) 842
BsnI GGCC 2 cut(s) 259, 944
Bso31I GGTCTC 3 cut(s) 529, 837, 1085
BsoBI CYCGRG 2 cut(s) 727, 1074
Bsp1286I GDGCHC 2 cut(s) 850, 968
Bsp143I GATC 9 cut(s) 91, 121, 199, 462, 670, 745, 1119, 1249, 1339
Bsp1720I GCTNAGC 1 cut(s) 330
BspACI CCGC 4 cut(s) 168, 914, 925, 1138
BspANI GGCC 2 cut(s) 259, 944
BspCNI CTCAG 7 cut(s) 322, 364, 741, 847, 853, 1225, 1271
BspDI ATCGAT 1 cut(s) 1118
BspFNI CGCG 1 cut(s) 916
BspHI TCATGA 1 cut(s) 1342
BspLI GGNNCC 5 cut(s) 41, 52, 427, 725, 929
BspMAI CTGCAG 2 cut(s) 129, 1291
BspPI GGATC 4 cut(s) 86, 207, 1114, 1347
BspT107I GGYRCC 2 cut(s) 425, 927
BspTI CTTAAG 1 cut(s) 644
BspTNI GGTCTC 3 cut(s) 529, 837, 1085
BsrI ACTGG 3 cut(s) 103, 238, 305
BssECI CCNNGG 6 cut(s) 727, 826, 919, 939, 952, 1075
BssMI GATC 9 cut(s) 91, 121, 199, 462, 670, 745, 1119, 1249, 1339
Bst2UI CCWGG 1 cut(s) 210
Bst4CI ACNGT 5 cut(s) 224, 386, 535, 845, 856
Bst6I CTCTTC 3 cut(s) 465, 1018, 1323
BstAFI CTTAAG 1 cut(s) 644
BstC8I GCNNGC 2 cut(s) 759, 1148
BstDEI CTNAG 9 cut(s) 330, 372, 459, 719, 749, 834, 861, 1233, 1258
BstDSI CCRYGG 3 cut(s) 826, 919, 952
BstF5I GGATG 2 cut(s) 161, 1327
BstFNI CGCG 1 cut(s) 916
BstHHI GCGC 2 cut(s) 905, 918
BstKTI GATC 9 cut(s) 94, 124, 202, 465, 673, 748, 1122, 1252, 1342
BstMAI GTCTC 5 cut(s) 529, 791, 837, 1085, 1261
BstMBI GATC 9 cut(s) 91, 121, 199, 462, 670, 745, 1119, 1249, 1339
BstMWI GCNNNNNNNGC 3 cut(s) 133, 922, 963
BstNI CCWGG 1 cut(s) 210
BstNSI RCATGY 1 cut(s) 714
BstSCI CCNGG 4 cut(s) 208, 428, 726, 727
BstSFI CTRYAG 2 cut(s) 125, 1287
BstSLI GKGCMC 1 cut(s) 850
BstUI CGCG 1 cut(s) 916
BstV1I GCAGC 1 cut(s) 917
BstV2I GAAGAC 3 cut(s) 380, 499, 1320
BstX2I RGATCY 1 cut(s) 199
BstYI RGATCY 1 cut(s) 199
Bsu15I ATCGAT 1 cut(s) 1118
BsuI GTATCC 1 cut(s) 486
BsuRI GGCC 2 cut(s) 259, 944
BsuTUI ATCGAT 1 cut(s) 1118
BtgI CCRYGG 3 cut(s) 826, 919, 952
BtsCI GGATG 2 cut(s) 161, 1327
BtsI GCAGTG 2 cut(s) 768, 1155
BtsIMutI CAGTG 7 cut(s) 96, 229, 318, 540, 768, 852, 1155
Cac8I GCNNGC 2 cut(s) 759, 1148
CciI TCATGA 1 cut(s) 1342
CfoI GCGC 2 cut(s) 905, 918
Cfr13I GGNCC 1 cut(s) 236
Cfr9I CCCGGG 1 cut(s) 727
ClaI ATCGAT 1 cut(s) 1118
CseI GACGC 2 cut(s) 1045, 1289
Csp6I GTAC 8 cut(s) 213, 347, 359, 841, 928, 998, 1192, 1264
CspCI CAANNNNNGTGG 4 cut(s) 860, 895, 957, 992
CviAII CATG 9 cut(s) 83, 196, 697, 711, 799, 895, 946, 1243, 1343
CviQI GTAC 8 cut(s) 213, 347, 359, 841, 928, 998, 1192, 1264
DdeI CTNAG 9 cut(s) 330, 372, 459, 719, 749, 834, 861, 1233, 1258
DpnI GATC 9 cut(s) 93, 123, 201, 464, 672, 747, 1121, 1251, 1341
DpnII GATC 9 cut(s) 91, 121, 199, 462, 670, 745, 1119, 1249, 1339
DraIII CACNNNGTG 1 cut(s) 419
DrdI GACNNNNNNGTC 1 cut(s) 243
DseDI GACNNNNNNGTC 1 cut(s) 243
EaeI YGGCCR 1 cut(s) 942
Eam1104I CTCTTC 3 cut(s) 465, 1018, 1323
EarI CTCTTC 3 cut(s) 465, 1018, 1323
Eco147I AGGCCT 1 cut(s) 259
Eco31I GGTCTC 3 cut(s) 529, 837, 1085
Eco47I GGWCC 1 cut(s) 236
Eco57I CTGAAG 3 cut(s) 238, 342, 1248
Eco88I CYCGRG 2 cut(s) 727, 1074
EcoRI GAATTC 1 cut(s) 1108
EcoRII CCWGG 1 cut(s) 208
Esp3I CGTCTC 1 cut(s) 791
FaeI CATG 9 cut(s) 86, 199, 700, 714, 802, 898, 949, 1246, 1346
FaqI GGGAC 1 cut(s) 842
FatI CATG 9 cut(s) 82, 195, 696, 710, 798, 894, 945, 1242, 1342
FauI CCCGC 2 cut(s) 921, 1131
Fnu4HI GCNGC 1 cut(s) 906
FokI GGATG 2 cut(s) 148, 1334
Fsp4HI GCNGC 1 cut(s) 906
FspBI CTAG 2 cut(s) 660, 1253
FspI TGCGCA 1 cut(s) 904
GlaI GCGC 2 cut(s) 904, 917
GluI GCNGC 1 cut(s) 906
HaeIII GGCC 2 cut(s) 259, 944
HapII CCGG 2 cut(s) 429, 728
HgaI GACGC 2 cut(s) 1045, 1289
HhaI GCGC 2 cut(s) 905, 918
Hin1II CATG 9 cut(s) 86, 199, 700, 714, 802, 898, 949, 1246, 1346
Hin6I GCGC 2 cut(s) 903, 916
HinP1I GCGC 2 cut(s) 903, 916
HindIII AAGCTT 2 cut(s) 647, 1176
HinfI GANTC 3 cut(s) 676, 884, 1033
HpaII CCGG 2 cut(s) 429, 728
HphI GGTGA 5 cut(s) 507, 680, 811, 1153, 1211
Hpy166II GTNNAC 7 cut(s) 148, 766, 848, 979, 1155, 1194, 1224
Hpy188I TCNGA 7 cut(s) 121, 230, 529, 675, 745, 750, 1261
Hpy188III TCNNGA 5 cut(s) 203, 435, 479, 1168, 1343
Hpy8I GTNNAC 7 cut(s) 148, 766, 848, 979, 1155, 1194, 1224
HpyAV CCTTC 4 cut(s) 23, 317, 1196, 1292
HpyCH4III ACNGT 5 cut(s) 224, 386, 535, 845, 856
HpyCH4IV ACGT 3 cut(s) 108, 996, 1044
HpyCH4V TGCA 6 cut(s) 127, 188, 692, 848, 1186, 1289
HpyF10VI GCNNNNNNNGC 3 cut(s) 133, 922, 963
HpyF3I CTNAG 9 cut(s) 330, 372, 459, 719, 749, 834, 861, 1233, 1258
HpySE526I ACGT 3 cut(s) 108, 996, 1044
Hsp92II CATG 9 cut(s) 86, 199, 700, 714, 802, 898, 949, 1246, 1346
HspAI GCGC 2 cut(s) 903, 916
KpnI GGTACC 1 cut(s) 931
Kzo9I GATC 9 cut(s) 91, 121, 199, 462, 670, 745, 1119, 1249, 1339
LmnI GCTCC 3 cut(s) 133, 326, 1075
Lsp1109I GCAGC 1 cut(s) 917
LweI GCATC 4 cut(s) 170, 331, 480, 1100
MaeI CTAG 2 cut(s) 660, 1253
MaeII ACGT 3 cut(s) 108, 996, 1044
MaeIII GTNAC 4 cut(s) 104, 407, 706, 1061
MalI GATC 9 cut(s) 93, 123, 201, 464, 672, 747, 1121, 1251, 1341
MboI GATC 9 cut(s) 91, 121, 199, 462, 670, 745, 1119, 1249, 1339
MflI RGATCY 1 cut(s) 199
MhlI GDGCHC 2 cut(s) 850, 968
MluCI AATT 3 cut(s) 189, 376, 1108
MmeI TCCRAC 2 cut(s) 91, 111
MroXI GAANNNNTTC 3 cut(s) 12, 1032, 1178
MseI TTAA 1 cut(s) 645
MslI CAYNNNNRTG 1 cut(s) 1160
MspA1I CMGCKG 1 cut(s) 574
MspCI CTTAAG 1 cut(s) 644
MspI CCGG 2 cut(s) 429, 728
MspR9I CCNGG 4 cut(s) 210, 430, 728, 729
MvaI CCWGG 1 cut(s) 210
MvnI CGCG 1 cut(s) 916
MwoI GCNNNNNNNGC 3 cut(s) 133, 922, 963
NciI CCSGG 3 cut(s) 430, 728, 729
NdeII GATC 9 cut(s) 91, 121, 199, 462, 670, 745, 1119, 1249, 1339
NlaIII CATG 9 cut(s) 86, 199, 700, 714, 802, 898, 949, 1246, 1346
NlaIV GGNNCC 5 cut(s) 41, 52, 427, 725, 929
NmeAIII GCCGAG 1 cut(s) 920
NmuCI GTSAC 2 cut(s) 407, 1061
NsbI TGCGCA 1 cut(s) 904
NspI RCATGY 1 cut(s) 714
PagI TCATGA 1 cut(s) 1342
PceI AGGCCT 1 cut(s) 259
PdmI GAANNNNTTC 3 cut(s) 12, 1032, 1178
PfeI GAWTC 3 cut(s) 676, 884, 1033
PflFI GACNNNGTC 1 cut(s) 224
PflMI CCANNNNNTGG 1 cut(s) 60
PkrI GCNGC 1 cut(s) 907
Psp6I CCWGG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 208
PspN4I GGNNCC 5 cut(s) 41, 52, 427, 725, 929
PspPI GGNCC 1 cut(s) 236
PstI CTGCAG 2 cut(s) 129, 1291
PsuI RGATCY 1 cut(s) 199
PsyI GACNNNGTC 1 cut(s) 224
PvuII CAGCTG 1 cut(s) 574
RsaI GTAC 8 cut(s) 214, 348, 360, 842, 929, 999, 1193, 1265
RsaNI GTAC 8 cut(s) 213, 347, 359, 841, 928, 998, 1192, 1264
RseI CAYNNNNRTG 1 cut(s) 1160
SaqAI TTAA 1 cut(s) 645
SatI GCNGC 1 cut(s) 906
Sau3AI GATC 9 cut(s) 91, 121, 199, 462, 670, 745, 1119, 1249, 1339
Sau96I GGNCC 1 cut(s) 236
ScrFI CCNGG 4 cut(s) 210, 430, 728, 729
SduI GDGCHC 2 cut(s) 850, 968
SfaNI GCATC 4 cut(s) 170, 331, 480, 1100
SfcI CTRYAG 2 cut(s) 125, 1287
SinI GGWCC 1 cut(s) 236
SmaI CCCGGG 1 cut(s) 729
SmiMI CAYNNNNRTG 1 cut(s) 1160
SmlI CTYRAG 2 cut(s) 203, 644
SmoI CTYRAG 2 cut(s) 203, 644
Sse9I AATT 3 cut(s) 189, 376, 1108
SseBI AGGCCT 1 cut(s) 259
SsiI CCGC 4 cut(s) 168, 914, 925, 1138
SspMI CTAG 2 cut(s) 660, 1253
StuI AGGCCT 1 cut(s) 259
StyD4I CCNGG 4 cut(s) 208, 428, 726, 727
TaaI ACNGT 5 cut(s) 224, 386, 535, 845, 856
TaiI ACGT 3 cut(s) 111, 999, 1047
TaqI TCGA 3 cut(s) 351, 1094, 1118
TasI AATT 3 cut(s) 189, 376, 1108
TatI WGTACW 1 cut(s) 346
TfiI GAWTC 3 cut(s) 676, 884, 1033
Tru1I TTAA 1 cut(s) 645
Tru9I TTAA 1 cut(s) 645
TscAI CASTG 7 cut(s) 103, 229, 325, 540, 768, 859, 1162
TseFI GTSAC 2 cut(s) 407, 1061
TseI GCWGC 1 cut(s) 905
Tsp45I GTSAC 2 cut(s) 407, 1061
TspDTI ATGAA 6 cut(s) 557, 627, 787, 1259, 1323, 1338
TspGWI ACGGA 1 cut(s) 941
TspMI CCCGGG 1 cut(s) 727
TspRI CASTG 7 cut(s) 103, 229, 325, 540, 768, 859, 1162
Tth111I GACNNNGTC 1 cut(s) 224
Van91I CCANNNNNTGG 1 cut(s) 60
Vha464I CTTAAG 1 cut(s) 644
VneI GTGCAC 1 cut(s) 846
VpaK11BI GGWCC 1 cut(s) 236
XapI RAATTY 1 cut(s) 1108
XceI RCATGY 1 cut(s) 714
XmaI CCCGGG 1 cut(s) 727
XmnI GAANNNNTTC 3 cut(s) 12, 1032, 1178
XspI CTAG 2 cut(s) 660, 1253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.