Prupe.7G028500_v2.0.a1

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Forward (+)
5283445 .. 5287383
3939 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G028500.1

Sequence Viewer

Length: 1341 bp
ATGAGAGAGATCCTTCACGTTCAGGGCGGTCAATGTGGCAACCAGATTGGCTCCAAGTTCTGGGAGGTTGTGTGCGATGAGCACGGCATAGATCCAACTGGTAGGTACGTCGGTACCAAGGATGTGCAGCTGGAGCGTGTCAATGTCTACTACAACGAAGCATCATGTGGGCGGTTTGTTCCTCGTGCTGTGCTCATGGACTTGGAACCTGGGACCATGGACAGTGTTCGCACTGGTCCGTATGGCCAGATCTTCAGGCCTGATAACTTTGTTTTCGGACAGTCTGGTGCTGGTAACAACTGGGCAAAGGGACACTACACTGAAGGTGCAGAGCTTATTGATGCCGTTCTTGATGTTGTGAGAAAGGAGGCTGAGAACTGTGACTGTCTTCAAGGTTTTCAAGTTTGCCACTCCTTGGGTGGAGGAACTGGTTCTGGAATGGGAACCTTGTTGATCTCGAAGATTAGGGAGGAGTACCCTGACAGGATGATGCTAACATTCTCTGTTTTCCCTTCACCAAAGGTCTCTGATACAGTTGTTGAGCCATACAATGCTACCCTTTCTGTGCATCAGCTTGTGGAGAATGCAGATGAGTGTATGGTGTTGGATAATGAAGCATTATATGATATCTGCTTCAGGACTCTCAAGTTGACTACTCCTAGTTTTGGTGACCTGAACCACTTGATCTCTGCAACCATGAGTGGGGTCACTTGCTGCCTTCGCTTCCCTGGTCAACTCAACTCTGACCTCCGAAAACTTGCTGTCAACTTGATCCCATTTCCTCGTCTCCACTTCTTCATGGTTGGATTTGCCCCTCTGACCTCCCGTGGATCCCAGCAATACCGAGCTCTAACAGTCCCAGAATTGACCCAGCAGATGTGGGATTCCAAGAACATGATGTGCGCTGCTGATCCCAGGCATGGTCGGTACCTCACTGTCTCAGCCATGTTCAGGGGCAAGATGAGCACTAAAGAGGTGGACGAACAAATGATAAATGTTCAGAACAAGAACTCTTCCTACTTTGTTGAGTGGATACCAAACAATGTGAAATCAAGCGTTTGTGACATTCCACCCAGAGGGCTATCCATGGCATCCACATTCATCGGGAATTCGACCTCCATCCAGGAAATGTTTAGGCGTGTGAGTGAACAATTTACTGCCATGTTCAGGAGGAAGGCCTTCTTGCACTGGTACACTGGCGAAGGAATGGACGAAATGGAATTCACTGAAGCAGAGAGCAACATGAATGATCTCGTCTCTGAGTATCAGCAATACCAGGATGCGACTGCCGATGAGGAAGGTGAATACGAGGACGAGGAGGAAGTGATGGAGGATATGTGA
Functional Annotation

Protein Analysis

447

Amino Acids

50.25

Weight (kDa)

4.78

Isoelectric Point (pI)

33.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0026685)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G12250
prunus_persica Prupe.7G028500_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 113, 927
AccB1I GGYRCC 2 cut(s) 113, 927
AccB7I CCANNNNNTGG 2 cut(s) 60, 415
AccI GTMKAC 1 cut(s) 147
AciI CCGC 2 cut(s) 27, 172
AclWI GGATC 6 cut(s) 4, 86, 766, 825, 838, 905
AcoI YGGCCR 1 cut(s) 244
AcsI RAATTY 2 cut(s) 1108, 1220
AcuI CTGAAG 4 cut(s) 238, 342, 619, 1248
AfaI GTAC 5 cut(s) 107, 115, 476, 929, 1193
AfiI CCNNNNNNNGG 8 cut(s) 60, 415, 665, 702, 920, 951, 1076, 1167
AgsI TTSAA 2 cut(s) 392, 401
AjnI CCWGG 5 cut(s) 208, 727, 914, 1122, 1275
AluBI AGCT 4 cut(s) 130, 334, 574, 848
AluI AGCT 4 cut(s) 130, 334, 574, 848
Alw21I GWGCWC 4 cut(s) 84, 195, 850, 968
Alw26I GTCTC 4 cut(s) 529, 791, 943, 1261
AlwI GGATC 6 cut(s) 4, 86, 766, 825, 838, 905
AoxI GGCC 3 cut(s) 244, 257, 1176
ApeKI GCWGC 3 cut(s) 127, 714, 905
ApoI RAATTY 2 cut(s) 1108, 1220
Asp700I GAANNNNTTC 2 cut(s) 430, 1178
Asp718I GGTACC 2 cut(s) 113, 927
AspLEI GCGC 1 cut(s) 905
AspS9I GGNCC 2 cut(s) 213, 236
AsuHPI GGTGA 3 cut(s) 507, 680, 1313
AvaII GGWCC 2 cut(s) 213, 236
BaeI ACNNNNGTAYC 6 cut(s) 97, 97, 130, 130, 522, 555
BalI TGGCCA 1 cut(s) 246
BamHI GGATCC 1 cut(s) 830
BanI GGYRCC 2 cut(s) 113, 927
BanII GRGCYC 1 cut(s) 850
BauI CACGAG 1 cut(s) 183
BbsI GAAGAC 1 cut(s) 380
Bbv12I GWGCWC 4 cut(s) 84, 195, 850, 968
BbvI GCAGC 3 cut(s) 139, 701, 892
BccI CCATC 2 cut(s) 1127, 1321
BceAI ACGGC 2 cut(s) 100, 329
BciT130I CCWGG 5 cut(s) 210, 729, 916, 1124, 1277
BciVI GTATCC 1 cut(s) 1026
BcoDI GTCTC 4 cut(s) 529, 791, 943, 1261
BfaI CTAG 1 cut(s) 660
BfuI GTATCC 1 cut(s) 1026
BglII AGATCT 1 cut(s) 249
BisI GCNGC 3 cut(s) 128, 715, 906
BlsI GCNGC 3 cut(s) 129, 716, 907
Bme1390I CCNGG 5 cut(s) 210, 729, 916, 1124, 1277
Bme18I GGWCC 2 cut(s) 213, 236
BmgT120I GGNCC 2 cut(s) 213, 236
BmiI GGNNCC 7 cut(s) 52, 115, 207, 214, 445, 832, 929
BmrFI CCNGG 5 cut(s) 210, 729, 916, 1124, 1277
BmrI ACTGGG 1 cut(s) 310
BmsI GCATC 6 cut(s) 170, 331, 480, 577, 1100, 1270
BmuI ACTGGG 1 cut(s) 310
BpiI GAAGAC 1 cut(s) 380
BpmI CTGGAG 1 cut(s) 152
BpuEI CTTGAG 1 cut(s) 629
BsaI GGTCTC 1 cut(s) 529
BsaJI CCNNGG 8 cut(s) 117, 209, 216, 414, 727, 826, 914, 1086
BsaXI ACNNNNNCTCC 3 cut(s) 56, 86, 1322
Bsc4I CCNNNNNNNGG 8 cut(s) 60, 415, 665, 702, 920, 951, 1076, 1167
Bse1I ACTGG 6 cut(s) 103, 238, 305, 433, 1193, 1201
BseBI CCWGG 5 cut(s) 210, 729, 916, 1124, 1277
BseDI CCNNGG 8 cut(s) 117, 209, 216, 414, 727, 826, 914, 1086
BseGI GGATG 5 cut(s) 127, 492, 1091, 1119, 1285
BseLI CCNNNNNNNGG 8 cut(s) 60, 415, 665, 702, 920, 951, 1076, 1167
BseMII CTCAG 3 cut(s) 363, 954, 1251
BseNI ACTGG 6 cut(s) 103, 238, 305, 433, 1193, 1201
BseRI GAGGAG 2 cut(s) 485, 1331
BseXI GCAGC 3 cut(s) 139, 701, 892
BseYI CCCAGC 2 cut(s) 834, 870
BsgI GTGCAG 2 cut(s) 146, 348
BshFI GGCC 3 cut(s) 246, 259, 1178
BshNI GGYRCC 2 cut(s) 113, 927
BsiHKAI GWGCWC 4 cut(s) 84, 195, 850, 968
BslFI GGGAC 3 cut(s) 226, 324, 842
BslI CCNNNNNNNGG 8 cut(s) 60, 415, 665, 702, 920, 951, 1076, 1167
BsmAI GTCTC 4 cut(s) 529, 791, 943, 1261
BsmBI CGTCTC 2 cut(s) 791, 1261
BsmFI GGGAC 3 cut(s) 226, 324, 842
BsmI GAATGC 1 cut(s) 589
BsnI GGCC 3 cut(s) 246, 259, 1178
Bso31I GGTCTC 1 cut(s) 529
Bsp1286I GDGCHC 4 cut(s) 84, 195, 850, 968
Bsp143I GATC 9 cut(s) 9, 91, 249, 453, 684, 771, 830, 910, 1249
Bsp19I CCATGG 2 cut(s) 216, 1086
BspACI CCGC 2 cut(s) 27, 172
BspANI GGCC 3 cut(s) 246, 259, 1178
BspCNI CTCAG 3 cut(s) 364, 953, 1252
BspLI GGNNCC 7 cut(s) 52, 115, 207, 214, 445, 832, 929
BspPI GGATC 6 cut(s) 4, 86, 766, 825, 838, 905
BspT107I GGYRCC 2 cut(s) 113, 927
BspTNI GGTCTC 1 cut(s) 529
BsrI ACTGG 6 cut(s) 103, 238, 305, 433, 1193, 1201
BssECI CCNNGG 8 cut(s) 117, 209, 216, 414, 727, 826, 914, 1086
BssMI GATC 9 cut(s) 9, 91, 249, 453, 684, 771, 830, 910, 1249
BssSI CACGAG 1 cut(s) 183
BssT1I CCWWGG 4 cut(s) 117, 216, 414, 1086
Bst2BI CACGAG 1 cut(s) 183
Bst2UI CCWGG 5 cut(s) 210, 729, 916, 1124, 1277
Bst4CI ACNGT 7 cut(s) 224, 282, 380, 386, 535, 856, 937
Bst6I CTCTTC 1 cut(s) 1018
BstDEI CTNAG 3 cut(s) 372, 940, 1260
BstDSI CCRYGG 3 cut(s) 216, 826, 1086
BstEII GGTNACC 1 cut(s) 668
BstF5I GGATG 5 cut(s) 127, 492, 1091, 1119, 1285
BstHHI GCGC 1 cut(s) 905
BstKTI GATC 9 cut(s) 12, 94, 252, 456, 687, 774, 833, 913, 1252
BstMAI GTCTC 4 cut(s) 529, 791, 943, 1261
BstMBI GATC 9 cut(s) 9, 91, 249, 453, 684, 771, 830, 910, 1249
BstMWI GCNNNNNNNGC 3 cut(s) 133, 720, 963
BstNI CCWGG 5 cut(s) 210, 729, 916, 1124, 1277
BstPI GGTNACC 1 cut(s) 668
BstSCI CCNGG 5 cut(s) 208, 727, 914, 1122, 1275
BstV1I GCAGC 3 cut(s) 139, 701, 892
BstV2I GAAGAC 1 cut(s) 380
BstX2I RGATCY 4 cut(s) 9, 91, 249, 830
BstYI RGATCY 4 cut(s) 9, 91, 249, 830
BsuI GTATCC 1 cut(s) 1026
BsuRI GGCC 3 cut(s) 246, 259, 1178
BtgI CCRYGG 3 cut(s) 216, 826, 1086
BtgZI GCGATG 1 cut(s) 90
BtsCI GGATG 5 cut(s) 127, 492, 1091, 1119, 1285
BtsIMutI CAGTG 7 cut(s) 229, 231, 318, 933, 1186, 1194, 1224
CfoI GCGC 1 cut(s) 905
Cfr13I GGNCC 2 cut(s) 213, 236
Csp6I GTAC 5 cut(s) 106, 114, 475, 928, 1192
CviQI GTAC 5 cut(s) 106, 114, 475, 928, 1192
DdeI CTNAG 3 cut(s) 372, 940, 1260
DpnI GATC 9 cut(s) 11, 93, 251, 455, 686, 773, 832, 912, 1251
DpnII GATC 9 cut(s) 9, 91, 249, 453, 684, 771, 830, 910, 1249
EaeI YGGCCR 1 cut(s) 244
Eam1104I CTCTTC 1 cut(s) 1018
EarI CTCTTC 1 cut(s) 1018
Ecl136II GAGCTC 1 cut(s) 848
Eco130I CCWWGG 4 cut(s) 117, 216, 414, 1086
Eco147I AGGCCT 2 cut(s) 259, 1178
Eco24I GRGCYC 1 cut(s) 850
Eco31I GGTCTC 1 cut(s) 529
Eco32I GATATC 1 cut(s) 628
Eco47I GGWCC 2 cut(s) 213, 236
Eco53kI GAGCTC 1 cut(s) 848
Eco57I CTGAAG 4 cut(s) 238, 342, 619, 1248
Eco91I GGTNACC 1 cut(s) 668
EcoICRI GAGCTC 1 cut(s) 848
EcoO65I GGTNACC 1 cut(s) 668
EcoRI GAATTC 2 cut(s) 1108, 1220
EcoRII CCWGG 5 cut(s) 208, 727, 914, 1122, 1275
EcoRV GATATC 1 cut(s) 628
EcoT14I CCWWGG 4 cut(s) 117, 216, 414, 1086
EcoT38I GRGCYC 1 cut(s) 850
ErhI CCWWGG 4 cut(s) 117, 216, 414, 1086
Esp3I CGTCTC 2 cut(s) 791, 1261
FalI AAGNNNNNCTT 2 cut(s) 1166, 1198
FaqI GGGAC 3 cut(s) 226, 324, 842
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 3 cut(s) 128, 715, 906
FokI GGATG 5 cut(s) 134, 499, 1078, 1106, 1292
FriOI GRGCYC 1 cut(s) 850
Fsp4HI GCNGC 3 cut(s) 128, 715, 906
FspBI CTAG 1 cut(s) 660
GlaI GCGC 1 cut(s) 904
GluI GCNGC 3 cut(s) 128, 715, 906
GsaI CCCAGC 2 cut(s) 838, 874
GsuI CTGGAG 1 cut(s) 152
HaeIII GGCC 3 cut(s) 246, 259, 1178
HhaI GCGC 1 cut(s) 905
Hin6I GCGC 1 cut(s) 903
HinP1I GCGC 1 cut(s) 903
HincII GTYRAC 3 cut(s) 651, 734, 766
HindII GTYRAC 3 cut(s) 651, 734, 766
HinfI GANTC 2 cut(s) 640, 884
HphI GGTGA 3 cut(s) 507, 680, 1313
Hpy166II GTNNAC 7 cut(s) 148, 651, 734, 766, 979, 1148, 1194
Hpy188I TCNGA 7 cut(s) 278, 529, 745, 752, 819, 1002, 1261
Hpy188III TCNNGA 6 cut(s) 350, 435, 457, 637, 1105, 1168
Hpy8I GTNNAC 7 cut(s) 148, 651, 734, 766, 979, 1148, 1194
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 8 cut(s) 23, 317, 522, 728, 1168, 1189, 1196, 1292
HpyCH4III ACNGT 7 cut(s) 224, 282, 380, 386, 535, 856, 937
HpyCH4IV ACGT 2 cut(s) 18, 108
HpyCH4V TGCA 6 cut(s) 127, 329, 568, 587, 692, 1186
HpyF10VI GCNNNNNNNGC 3 cut(s) 133, 720, 963
HpyF3I CTNAG 3 cut(s) 372, 940, 1260
HpySE526I ACGT 2 cut(s) 18, 108
HspAI GCGC 1 cut(s) 903
KpnI GGTACC 2 cut(s) 117, 931
Kzo9I GATC 9 cut(s) 9, 91, 249, 453, 684, 771, 830, 910, 1249
LmnI GCTCC 2 cut(s) 56, 133
Lsp1109I GCAGC 3 cut(s) 139, 701, 892
LweI GCATC 6 cut(s) 170, 331, 480, 577, 1100, 1270
MaeI CTAG 1 cut(s) 660
MaeII ACGT 2 cut(s) 18, 108
MaeIII GTNAC 5 cut(s) 293, 380, 668, 706, 1061
MalI GATC 9 cut(s) 11, 93, 251, 455, 686, 773, 832, 912, 1251
MboI GATC 9 cut(s) 9, 91, 249, 453, 684, 771, 830, 910, 1249
MboII GAAGA 5 cut(s) 244, 380, 472, 787, 1005
MflI RGATCY 4 cut(s) 9, 91, 249, 830
MhlI GDGCHC 4 cut(s) 84, 195, 850, 968
MlsI TGGCCA 1 cut(s) 246
MluCI AATT 4 cut(s) 863, 1108, 1151, 1220
MluNI TGGCCA 1 cut(s) 246
MlyI GAGTC 1 cut(s) 634
MmeI TCCRAC 3 cut(s) 119, 585, 784
Mox20I TGGCCA 1 cut(s) 246
MroXI GAANNNNTTC 2 cut(s) 430, 1178
MscI TGGCCA 1 cut(s) 246
Msp20I TGGCCA 1 cut(s) 246
MspA1I CMGCKG 1 cut(s) 130
MspR9I CCNGG 5 cut(s) 210, 729, 916, 1124, 1277
Mva1269I GAATGC 1 cut(s) 589
MvaI CCWGG 5 cut(s) 210, 729, 916, 1124, 1277
MwoI GCNNNNNNNGC 3 cut(s) 133, 720, 963
NcoI CCATGG 2 cut(s) 216, 1086
NdeII GATC 9 cut(s) 9, 91, 249, 453, 684, 771, 830, 910, 1249
NlaIV GGNNCC 7 cut(s) 52, 115, 207, 214, 445, 832, 929
NmuCI GTSAC 4 cut(s) 380, 668, 706, 1061
PceI AGGCCT 2 cut(s) 259, 1178
PctI GAATGC 1 cut(s) 589
PdmI GAANNNNTTC 2 cut(s) 430, 1178
PfeI GAWTC 1 cut(s) 884
PflMI CCANNNNNTGG 2 cut(s) 60, 415
PfoI TCCNGGA 1 cut(s) 1122
PkrI GCNGC 3 cut(s) 129, 716, 907
PleI GAGTC 1 cut(s) 634
PpsI GAGTC 1 cut(s) 634
Psp124BI GAGCTC 1 cut(s) 850
Psp6I CCWGG 5 cut(s) 208, 727, 914, 1122, 1275
PspEI GGTNACC 1 cut(s) 668
PspFI CCCAGC 2 cut(s) 834, 870
PspGI CCWGG 5 cut(s) 208, 727, 914, 1122, 1275
PspN4I GGNNCC 7 cut(s) 52, 115, 207, 214, 445, 832, 929
PspPI GGNCC 2 cut(s) 213, 236
PsrI GAACNNNNNNTAC 2 cut(s) 1001, 1033
PsuI RGATCY 4 cut(s) 9, 91, 249, 830
PvuII CAGCTG 1 cut(s) 130
RsaI GTAC 5 cut(s) 107, 115, 476, 929, 1193
RsaNI GTAC 5 cut(s) 106, 114, 475, 928, 1192
SacI GAGCTC 1 cut(s) 850
SatI GCNGC 3 cut(s) 128, 715, 906
Sau3AI GATC 9 cut(s) 9, 91, 249, 453, 684, 771, 830, 910, 1249
Sau96I GGNCC 2 cut(s) 213, 236
SchI GAGTC 1 cut(s) 634
ScrFI CCNGG 5 cut(s) 210, 729, 916, 1124, 1277
SduI GDGCHC 4 cut(s) 84, 195, 850, 968
SfaNI GCATC 6 cut(s) 170, 331, 480, 577, 1100, 1270
SinI GGWCC 2 cut(s) 213, 236
SmlI CTYRAG 1 cut(s) 644
SmoI CTYRAG 1 cut(s) 644
Sse9I AATT 4 cut(s) 863, 1108, 1151, 1220
SseBI AGGCCT 2 cut(s) 259, 1178
SsiI CCGC 2 cut(s) 27, 172
SspMI CTAG 1 cut(s) 660
SstI GAGCTC 1 cut(s) 850
StuI AGGCCT 2 cut(s) 259, 1178
StyD4I CCNGG 5 cut(s) 208, 727, 914, 1122, 1275
StyI CCWWGG 4 cut(s) 117, 216, 414, 1086
TaaI ACNGT 7 cut(s) 224, 282, 380, 386, 535, 856, 937
TaiI ACGT 2 cut(s) 21, 111
TaqI TCGA 2 cut(s) 458, 1112
TasI AATT 4 cut(s) 863, 1108, 1151, 1220
TfiI GAWTC 1 cut(s) 884
TscAI CASTG 7 cut(s) 229, 238, 325, 940, 1193, 1201, 1231
TseFI GTSAC 4 cut(s) 380, 668, 706, 1061
TseI GCWGC 3 cut(s) 127, 714, 905
Tsp45I GTSAC 4 cut(s) 380, 668, 706, 1061
TspDTI ATGAA 4 cut(s) 627, 787, 1090, 1259
TspGWI ACGGA 1 cut(s) 228
TspRI CASTG 7 cut(s) 229, 238, 325, 940, 1193, 1201, 1231
Van91I CCANNNNNTGG 2 cut(s) 60, 415
VpaK11BI GGWCC 2 cut(s) 213, 236
XapI RAATTY 2 cut(s) 1108, 1220
XcmI CCANNNNNNNNNTGG 1 cut(s) 416
XmiI GTMKAC 1 cut(s) 147
XmnI GAANNNNTTC 2 cut(s) 430, 1178
XspI CTAG 1 cut(s) 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.