AT5G37780

Calmodulin mediates the control of a large number of enzymes, ion channels and other proteins by Ca(2 ). Among the enzymes to be stimulated by the calmodulin-Ca(2 ) complex are a number of protein kinases and phosphatases

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0020827
Physical Location & Seq
Reverse (-)
15004466 .. 15006267
1802 bp
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UTR
Exon/CDS
Intron
AT5G37780.2

Sequence Viewer

Length: 450 bp
ATGGCGGATCAACTCACTGACGAACAGATCTCCGAATTCAAGGAAGCTTTTAGCCTCTTCGACAAAGATGGCGATGGTTGCATCACAACAAAAGAGCTGGGAACAGTTATGCGTTCACTAGGACAAAACCCAACAGAGGCTGAGCTCCAAGACATGATCAACGAGGTTGATGCAGATGGAAACGGCACTATCGACTTCCCCGAGTTCCTGAACCTGATGGCTAAGAAGATGAAAGACACTGACTCCGAGGAAGAGCTAAAAGAAGCCTTCAGGGTTTTCGACAAAGACCAGAACGGTTTCATCTCCGCTGCTGAGCTACGCCATGTGATGACCAATCTTGGTGAGAAGCTAACTGATGAAGAAGTGGAAGAGATGATCCGTGAGGCTGATGTTGATGGAGATGGTCAGATTAACTATGAAGAGTTTGTCAAGATTATGATGGCTAAGTGA

Protein Analysis

149

Amino Acids

16.86

Weight (kDa)

4.14

Isoelectric Point (pI)

29.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_8 PF13833 40 - 90 2.3e-10 EF-hand domain pair
EF-hand_7 PF13499 41 - 88 1.3e-09 EF-hand domain pair
EF-hand_9 PF14658 41 - 90 4e-06 EF-hand domain
EF-hand_1 PF00036 63 - 90 2.7e-08 EF hand domain
EF-hand_7 PF13499 98 - 162 5.2e-22 EF-hand domain pair
AIF-1 PF21008 99 - 164 2.8e-06 Allograft inflammatory factor 1
EF-hand_1 PF00036 100 - 127 2.9e-09 EF hand domain
EF-hand_6 PF13405 100 - 129 2.3e-09 EF-hand domain
EF-hand_5 PF13202 101 - 125 1.5e-06 EF hand
EF-hand_9 PF14658 103 - 163 2.2e-07 EF-hand domain
EF-hand_8 PF13833 113 - 159 1.5e-11 EF-hand domain pair
EF-hand_1 PF00036 136 - 163 5.5e-10 EF hand domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0020827)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66410 AT1G66410 AT5G37780 AT5G37780
rosa_laevigata RLG00000022862

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 5, 306
AclWI GGATC 2 cut(s) 15, 370
AcsI RAATTY 1 cut(s) 35
AcuI CTGAAG 1 cut(s) 253
AfiI CCNNNNNNNGG 1 cut(s) 136
AgsI TTSAA 1 cut(s) 40
AluBI AGCT 6 cut(s) 47, 97, 145, 256, 316, 349
AluI AGCT 6 cut(s) 47, 97, 145, 256, 316, 349
Alw21I GWGCWC 1 cut(s) 147
AlwI GGATC 2 cut(s) 15, 370
AlwNI CAGNNNCTG 1 cut(s) 140
Ama87I CYCGRG 1 cut(s) 200
ApeKI GCWGC 1 cut(s) 308
ApoI RAATTY 1 cut(s) 35
Asp700I GAANNNNTTC 1 cut(s) 296
AsuHPI GGTGA 1 cut(s) 353
AvaI CYCGRG 1 cut(s) 200
BanII GRGCYC 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 147
BbvI GCAGC 1 cut(s) 295
BccI CCATC 7 cut(s) 62, 68, 170, 211, 389, 395, 433
BceAI ACGGC 1 cut(s) 199
BcgI CGANNNNNNTGC 2 cut(s) 152, 186
BclI TGATCA 1 cut(s) 156
BfaI CTAG 1 cut(s) 119
BglII AGATCT 1 cut(s) 27
BisI GCNGC 1 cut(s) 309
BlpI GCTNAGC 2 cut(s) 141, 312
BlsI GCNGC 1 cut(s) 310
BmeT110I CYCGRG 1 cut(s) 200
BmsI GCATC 2 cut(s) 90, 160
Bpu1102I GCTNAGC 2 cut(s) 141, 312
BsaJI CCNNGG 1 cut(s) 246
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bsc4I CCNNNNNNNGG 1 cut(s) 136
BseDI CCNNGG 1 cut(s) 246
BseLI CCNNNNNNNGG 1 cut(s) 136
BseMII CTCAG 2 cut(s) 132, 303
BseXI GCAGC 1 cut(s) 295
BseYI CCCAGC 1 cut(s) 97
BsiHKAI GWGCWC 1 cut(s) 147
BsiHKCI CYCGRG 1 cut(s) 200
BslI CCNNNNNNNGG 1 cut(s) 136
BsoBI CYCGRG 1 cut(s) 200
Bsp1286I GDGCHC 1 cut(s) 147
Bsp143I GATC 4 cut(s) 7, 27, 156, 375
Bsp1720I GCTNAGC 2 cut(s) 141, 312
BspACI CCGC 2 cut(s) 5, 306
BspCNI CTCAG 2 cut(s) 133, 304
BspPI GGATC 2 cut(s) 15, 370
BspQI GCTCTTC 1 cut(s) 246
BssECI CCNNGG 1 cut(s) 246
BssMI GATC 4 cut(s) 7, 27, 156, 375
Bst4CI ACNGT 2 cut(s) 106, 296
Bst6I CTCTTC 4 cut(s) 62, 246, 363, 414
BstDEI CTNAG 4 cut(s) 141, 222, 312, 444
BstKTI GATC 4 cut(s) 10, 30, 159, 378
BstMBI GATC 4 cut(s) 7, 27, 156, 375
BstMWI GCNNNNNNNGC 1 cut(s) 78
BstV1I GCAGC 1 cut(s) 295
BstX2I RGATCY 1 cut(s) 27
BstYI RGATCY 1 cut(s) 27
BtgZI GCGATG 1 cut(s) 87
BtsIMutI CAGTG 2 cut(s) 15, 237
CaiI CAGNNNCTG 1 cut(s) 140
CviAII CATG 2 cut(s) 154, 323
DdeI CTNAG 4 cut(s) 141, 222, 312, 444
DpnI GATC 4 cut(s) 9, 29, 158, 377
DpnII GATC 4 cut(s) 7, 27, 156, 375
Eam1104I CTCTTC 4 cut(s) 62, 246, 363, 414
EarI CTCTTC 4 cut(s) 62, 246, 363, 414
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 145
Eco24I GRGCYC 1 cut(s) 147
Eco53kI GAGCTC 1 cut(s) 145
Eco57I CTGAAG 1 cut(s) 253
Eco88I CYCGRG 1 cut(s) 200
EcoICRI GAGCTC 1 cut(s) 145
EcoRI GAATTC 1 cut(s) 35
EcoT38I GRGCYC 1 cut(s) 147
FaeI CATG 2 cut(s) 157, 326
FaiI YATR 5 cut(s) 110, 155, 324, 417, 437
FatI CATG 2 cut(s) 153, 322
FbaI TGATCA 1 cut(s) 156
Fnu4HI GCNGC 1 cut(s) 309
FriOI GRGCYC 1 cut(s) 147
Fsp4HI GCNGC 1 cut(s) 309
FspBI CTAG 1 cut(s) 119
GluI GCNGC 1 cut(s) 309
GsaI CCCAGC 1 cut(s) 101
Hin1II CATG 2 cut(s) 157, 326
HindIII AAGCTT 1 cut(s) 45
HinfI GANTC 1 cut(s) 242
HphI GGTGA 1 cut(s) 353
Hpy166II GTNNAC 1 cut(s) 116
Hpy188I TCNGA 3 cut(s) 34, 247, 408
Hpy188III TCNNGA 2 cut(s) 208, 430
Hpy8I GTNNAC 1 cut(s) 116
HpyAV CCTTC 1 cut(s) 277
HpyCH4III ACNGT 2 cut(s) 106, 296
HpyCH4V TGCA 2 cut(s) 81, 173
HpyF10VI GCNNNNNNNGC 1 cut(s) 78
HpyF3I CTNAG 4 cut(s) 141, 222, 312, 444
Hsp92II CATG 2 cut(s) 157, 326
Ksp22I TGATCA 1 cut(s) 156
Kzo9I GATC 4 cut(s) 7, 27, 156, 375
LguI GCTCTTC 1 cut(s) 246
LmnI GCTCC 1 cut(s) 150
LpnPI CCDG 5 cut(s) 83, 221, 227, 256, 302
Lsp1109I GCAGC 1 cut(s) 295
LweI GCATC 2 cut(s) 90, 160
MaeI CTAG 1 cut(s) 119
MalI GATC 4 cut(s) 9, 29, 158, 377
MboI GATC 4 cut(s) 7, 27, 156, 375
MboII GAAGA 6 cut(s) 49, 238, 263, 371, 380, 431
MflI RGATCY 1 cut(s) 27
MhlI GDGCHC 1 cut(s) 147
MluCI AATT 1 cut(s) 35
MlyI GAGTC 1 cut(s) 236
MnlI CCTC 5 cut(s) 65, 130, 157, 241, 376
MroXI GAANNNNTTC 1 cut(s) 296
MseI TTAA 1 cut(s) 411
MspA1I CMGCKG 1 cut(s) 308
MwoI GCNNNNNNNGC 1 cut(s) 78
NdeII GATC 4 cut(s) 7, 27, 156, 375
NlaIII CATG 2 cut(s) 157, 326
PciSI GCTCTTC 1 cut(s) 246
PcsI WCGNNNNNNNCGW 2 cut(s) 189, 198
PdmI GAANNNNTTC 1 cut(s) 296
PkrI GCNGC 1 cut(s) 310
PleI GAGTC 1 cut(s) 236
PpsI GAGTC 1 cut(s) 236
Psp124BI GAGCTC 1 cut(s) 147
PspFI CCCAGC 1 cut(s) 97
PstNI CAGNNNCTG 1 cut(s) 140
PsuI RGATCY 1 cut(s) 27
SacI GAGCTC 1 cut(s) 147
SapI GCTCTTC 1 cut(s) 246
SaqAI TTAA 1 cut(s) 411
SatI GCNGC 1 cut(s) 309
Sau3AI GATC 4 cut(s) 7, 27, 156, 375
SchI GAGTC 1 cut(s) 236
SduI GDGCHC 1 cut(s) 147
SetI ASST 8 cut(s) 49, 99, 147, 168, 216, 258, 318, 351
SfaNI GCATC 2 cut(s) 90, 160
Sse9I AATT 1 cut(s) 35
SsiI CCGC 2 cut(s) 5, 306
SspMI CTAG 1 cut(s) 119
SstI GAGCTC 1 cut(s) 147
TaaI ACNGT 2 cut(s) 106, 296
TaqI TCGA 3 cut(s) 60, 192, 279
TasI AATT 1 cut(s) 35
Tru1I TTAA 1 cut(s) 411
Tru9I TTAA 1 cut(s) 411
TscAI CASTG 2 cut(s) 22, 244
TseI GCWGC 1 cut(s) 308
TspDTI ATGAA 4 cut(s) 245, 289, 372, 432
TspGWI ACGGA 1 cut(s) 368
TspRI CASTG 2 cut(s) 22, 244
XapI RAATTY 1 cut(s) 35
XmnI GAANNNNTTC 1 cut(s) 296
XspI CTAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.