AT5G40900

Nucleotide-diphospho-sugar transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0022000
Physical Location & Seq
Forward (+)
16391836 .. 16393427
1592 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G40900.1

Sequence Viewer

Length: 969 bp
ATGAAGATTGTAAGGATAGTGAAATCACCTTACCTTGTCATATGTTGCCTTCTCTTGATCATTCTTTGGTTATTGTCTCATCATGATCATAATCATCACTCTTGTGCTCCATACATGAATACTATCAGAGGAACACAATTCTCGCATCTTCAACCTGAATCTTCAGGCTTATCGAGTCTACTTAAAGAAGCAGCTACAGAAGACAAGATAGTGATTATTACCATGGTCGATCGAGAATGGGCAAAACCTGACTCTATTCTTGATCTATTCCTGGAGAGTGTACGGATTGGAGAAAGAACCAAACACTTGCTAAACCATTTGATCGTTGTGGCTTTAGATGATCAAGCTCTTCGATATTGTCTTCGTGCCCACCCACATTGTTACCTTCATAGATATTCTAGAAAAAAATCAGAATCTTTAAAACCAGATGGTCTTGTTACCGGTTGGAACAAGAAGTCTTTGGTTAAAGAGATCTTAGAACTCGGCTACCACATAATGTTCACCGAAGCAGATGTGATGTGGCTAAGAAATCCTCTAATGCACTGCAACCCACAAAATGCAATATCAGTGGCTTGCGGGAACTCATTAATTGATCATCAACATGATCATTTAACAACGGAAAACACAGGAGGTTTCTTCTATGCCAAGTCCAATGATATAACCATAGACATGTTTAATATCTTGAACGTAGAAAGGGTTTTGTATCCTGCAACTGGAAACCAATCCTTGTGTGATATTGTCAAGCGCGAAGATGTAATCAAAGCCCTTGATAAGAAAGTCACCTTCTTGGATGATGCTAACTTTGGGAAGTTTTGTCAACCAAATCCGCAAGATCAAAGCAAGATAACAACAGTCCATGCAAGTTGTTGTCATGATACAAAGAGTAAGGTGCGTTACCTAAAGCTACTTCTCCAGGACCGGAAAAATATGAATCCGCAATGGATTATTCCAAGCCAGTTATGCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nucleotid_trans

Protein Analysis

322

Amino Acids

36.98

Weight (kDa)

8.39

Isoelectric Point (pI)

41.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleotid_trans PF03407 102 - 300 4.7e-52 Nucleotide-diphospho-sugar transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022000)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40900
malus_domestica MD17G1012700.v1.1
prunus_persica Prupe.3G305000_v2.0.a1 Prupe.3G305000_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 178
AccII CGCG 1 cut(s) 747
AciI CCGC 3 cut(s) 576, 827, 935
AcuI CTGAAG 1 cut(s) 147
AfaI GTAC 1 cut(s) 282
AfiI CCNNNNNNNGG 1 cut(s) 713
AflIII ACRYGT 1 cut(s) 669
AgeI ACCGGT 1 cut(s) 440
AgsI TTSAA 2 cut(s) 152, 685
AjnI CCWGG 2 cut(s) 270, 912
AleI CACNNNNGTG 1 cut(s) 102
AluBI AGCT 3 cut(s) 194, 347, 904
AluI AGCT 3 cut(s) 194, 347, 904
Alw21I GWGCWC 1 cut(s) 109
Alw26I GTCTC 1 cut(s) 81
ApeKI GCWGC 1 cut(s) 191
AseI ATTAAT 1 cut(s) 587
AsiGI ACCGGT 1 cut(s) 440
AspLEI GCGC 1 cut(s) 747
AspS9I GGNCC 1 cut(s) 916
AsuHPI GGTGA 3 cut(s) 18, 493, 772
AvaII GGWCC 1 cut(s) 916
BaeGI GKGCMC 1 cut(s) 370
BbsI GAAGAC 2 cut(s) 207, 353
Bbv12I GWGCWC 1 cut(s) 109
BbvI GCAGC 1 cut(s) 203
BccI CCATC 1 cut(s) 422
BciT130I CCWGG 2 cut(s) 272, 914
BciVI GTATCC 1 cut(s) 714
BclI TGATCA 5 cut(s) 57, 85, 340, 592, 604
BcoDI GTCTC 1 cut(s) 81
BfaI CTAG 1 cut(s) 399
BfmI CTRYAG 1 cut(s) 195
BfuI GTATCC 1 cut(s) 714
BglII AGATCT 1 cut(s) 471
BisI GCNGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 193
Bme1390I CCNGG 2 cut(s) 272, 914
Bme18I GGWCC 1 cut(s) 916
BmgT120I GGNCC 1 cut(s) 916
BmrFI CCNGG 2 cut(s) 272, 914
BmsI GCATC 2 cut(s) 154, 784
BpiI GAAGAC 2 cut(s) 207, 353
BpmI CTGGAG 2 cut(s) 293, 896
BsaBI GATNNNNATC 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 222
BsaWI WCCGGW 2 cut(s) 440, 918
Bsc4I CCNNNNNNNGG 1 cut(s) 713
Bse118I RCCGGY 1 cut(s) 440
Bse1I ACTGG 2 cut(s) 718, 955
Bse3DI GCAATG 1 cut(s) 944
Bse8I GATNNNNATC 1 cut(s) 90
BseBI CCWGG 2 cut(s) 272, 914
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 1 cut(s) 796
BseJI GATNNNNATC 1 cut(s) 90
BseLI CCNNNNNNNGG 1 cut(s) 713
BseMI GCAATG 1 cut(s) 944
BseNI ACTGG 2 cut(s) 718, 955
BseSI GKGCMC 1 cut(s) 370
BseXI GCAGC 1 cut(s) 203
Bsh1236I CGCG 1 cut(s) 747
Bsh1285I CGRYCG 1 cut(s) 232
BshTI ACCGGT 1 cut(s) 440
BsiEI CGRYCG 1 cut(s) 232
BsiHKAI GWGCWC 1 cut(s) 109
BsiSI CCGG 2 cut(s) 441, 919
BslI CCNNNNNNNGG 1 cut(s) 713
BsmAI GTCTC 1 cut(s) 81
Bsp1286I GDGCHC 2 cut(s) 109, 370
Bsp19I CCATGG 1 cut(s) 222
BspACI CCGC 3 cut(s) 576, 827, 935
BspFNI CGCG 1 cut(s) 747
BspHI TCATGA 2 cut(s) 82, 871
BspQI GCTCTTC 1 cut(s) 354
BsrDI GCAATG 1 cut(s) 944
BsrFI RCCGGY 1 cut(s) 440
BsrI ACTGG 2 cut(s) 718, 955
BssAI RCCGGY 1 cut(s) 440
BssECI CCNNGG 1 cut(s) 222
BssT1I CCWWGG 1 cut(s) 222
Bst2UI CCWGG 2 cut(s) 272, 914
Bst4CI ACNGT 1 cut(s) 853
Bst6I CTCTTC 1 cut(s) 354
BstC8I GCNNGC 1 cut(s) 574
BstDEI CTNAG 2 cut(s) 475, 524
BstDSI CCRYGG 1 cut(s) 222
BstF5I GGATG 1 cut(s) 796
BstFNI CGCG 1 cut(s) 747
BstHHI GCGC 1 cut(s) 747
BstMAI GTCTC 1 cut(s) 81
BstMCI CGRYCG 1 cut(s) 232
BstMWI GCNNNNNNNGC 1 cut(s) 960
BstNI CCWGG 2 cut(s) 272, 914
BstNSI RCATGY 1 cut(s) 673
BstSCI CCNGG 2 cut(s) 270, 912
BstSFI CTRYAG 1 cut(s) 195
BstSLI GKGCMC 1 cut(s) 370
BstUI CGCG 1 cut(s) 747
BstV1I GCAGC 1 cut(s) 203
BstV2I GAAGAC 2 cut(s) 207, 353
BstX2I RGATCY 1 cut(s) 471
BstYI RGATCY 1 cut(s) 471
BsuI GTATCC 1 cut(s) 714
BtgI CCRYGG 1 cut(s) 222
BtsCI GGATG 1 cut(s) 796
BtsI GCAGTG 1 cut(s) 541
BtsIMutI CAGTG 2 cut(s) 541, 573
Cac8I GCNNGC 1 cut(s) 574
CciI TCATGA 2 cut(s) 82, 871
CfoI GCGC 1 cut(s) 747
Cfr10I RCCGGY 1 cut(s) 440
Cfr13I GGNCC 1 cut(s) 916
Csp6I GTAC 1 cut(s) 281
CspAI ACCGGT 1 cut(s) 440
CspCI CAANNNNNGTGG 4 cut(s) 359, 394, 549, 584
CviAII CATG 7 cut(s) 83, 115, 223, 602, 670, 857, 872
CviQI GTAC 1 cut(s) 281
DdeI CTNAG 2 cut(s) 475, 524
DraI TTTAAA 1 cut(s) 420
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
Eco130I CCWWGG 1 cut(s) 222
Eco47I GGWCC 1 cut(s) 916
Eco57I CTGAAG 1 cut(s) 147
EcoRII CCWGG 2 cut(s) 270, 912
EcoT14I CCWWGG 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 7 cut(s) 86, 118, 226, 605, 673, 860, 875
FatI CATG 7 cut(s) 82, 114, 222, 601, 669, 856, 871
FauI CCCGC 1 cut(s) 569
FauNDI CATATG 1 cut(s) 41
FbaI TGATCA 5 cut(s) 57, 85, 340, 592, 604
FblI GTMKAC 1 cut(s) 178
Fnu4HI GCNGC 1 cut(s) 192
FokI GGATG 1 cut(s) 803
Fsp4HI GCNGC 1 cut(s) 192
FspBI CTAG 1 cut(s) 399
GlaI GCGC 1 cut(s) 746
GluI GCNGC 1 cut(s) 192
GsuI CTGGAG 2 cut(s) 293, 896
HapII CCGG 2 cut(s) 441, 919
HhaI GCGC 1 cut(s) 747
Hin1II CATG 7 cut(s) 86, 118, 226, 605, 673, 860, 875
Hin6I GCGC 1 cut(s) 745
HinP1I GCGC 1 cut(s) 745
HincII GTYRAC 1 cut(s) 818
HindII GTYRAC 1 cut(s) 818
HinfI GANTC 5 cut(s) 158, 175, 251, 413, 931
HpaII CCGG 2 cut(s) 441, 919
HphI GGTGA 3 cut(s) 18, 493, 772
Hpy166II GTNNAC 4 cut(s) 179, 281, 501, 818
Hpy188I TCNGA 2 cut(s) 128, 412
Hpy188III TCNNGA 7 cut(s) 55, 83, 233, 260, 399, 682, 872
Hpy8I GTNNAC 4 cut(s) 179, 281, 501, 818
HpyAV CCTTC 3 cut(s) 59, 395, 793
HpyCH4III ACNGT 1 cut(s) 853
HpyCH4IV ACGT 1 cut(s) 687
HpyCH4V TGCA 6 cut(s) 541, 546, 560, 710, 860, 963
HpyF10VI GCNNNNNNNGC 1 cut(s) 960
HpyF3I CTNAG 2 cut(s) 475, 524
HpySE526I ACGT 1 cut(s) 687
Hsp92II CATG 7 cut(s) 86, 118, 226, 605, 673, 860, 875
HspAI GCGC 1 cut(s) 745
Ksp22I TGATCA 5 cut(s) 57, 85, 340, 592, 604
LguI GCTCTTC 1 cut(s) 354
LmnI GCTCC 1 cut(s) 112
Lsp1109I GCAGC 1 cut(s) 203
LweI GCATC 2 cut(s) 154, 784
MaeI CTAG 1 cut(s) 399
MaeII ACGT 1 cut(s) 687
MaeIII GTNAC 4 cut(s) 380, 436, 778, 893
MboII GAAGA 8 cut(s) 16, 140, 153, 212, 341, 353, 628, 761
MflI RGATCY 1 cut(s) 471
MhlI GDGCHC 2 cut(s) 109, 370
MluCI AATT 2 cut(s) 137, 588
MlyI GAGTC 2 cut(s) 184, 245
MmeI TCCRAC 1 cut(s) 425
MnlI CCTC 3 cut(s) 122, 543, 623
MseI TTAA 6 cut(s) 183, 419, 465, 587, 611, 675
MslI CAYNNNNRTG 3 cut(s) 102, 600, 668
MspI CCGG 2 cut(s) 441, 919
MspR9I CCNGG 2 cut(s) 272, 914
MvaI CCWGG 2 cut(s) 272, 914
MvnI CGCG 1 cut(s) 747
MwoI GCNNNNNNNGC 1 cut(s) 960
NcoI CCATGG 1 cut(s) 222
NdeI CATATG 1 cut(s) 41
NlaIII CATG 7 cut(s) 86, 118, 226, 605, 673, 860, 875
NmeAIII GCCGAG 1 cut(s) 462
NmuCI GTSAC 1 cut(s) 778
NspI RCATGY 1 cut(s) 673
OliI CACNNNNGTG 1 cut(s) 102
PagI TCATGA 2 cut(s) 82, 871
PciI ACATGT 1 cut(s) 669
PciSI GCTCTTC 1 cut(s) 354
PfeI GAWTC 3 cut(s) 158, 413, 931
PfoI TCCNGGA 2 cut(s) 270, 912
PinAI ACCGGT 1 cut(s) 440
PkrI GCNGC 1 cut(s) 193
Ple19I CGATCG 1 cut(s) 232
PleI GAGTC 2 cut(s) 183, 245
PpsI GAGTC 2 cut(s) 183, 245
PscI ACATGT 1 cut(s) 669
PshBI ATTAAT 1 cut(s) 587
Psp6I CCWGG 2 cut(s) 270, 912
PspGI CCWGG 2 cut(s) 270, 912
PspPI GGNCC 1 cut(s) 916
PsuI RGATCY 1 cut(s) 471
PvuI CGATCG 1 cut(s) 232
RsaI GTAC 1 cut(s) 282
RsaNI GTAC 1 cut(s) 281
RseI CAYNNNNRTG 3 cut(s) 102, 600, 668
SapI GCTCTTC 1 cut(s) 354
SaqAI TTAA 6 cut(s) 183, 419, 465, 587, 611, 675
SatI GCNGC 1 cut(s) 192
Sau96I GGNCC 1 cut(s) 916
SchI GAGTC 2 cut(s) 184, 245
ScrFI CCNGG 2 cut(s) 272, 914
SduI GDGCHC 2 cut(s) 109, 370
SfaNI GCATC 2 cut(s) 154, 784
SfcI CTRYAG 1 cut(s) 195
SinI GGWCC 1 cut(s) 916
SmiMI CAYNNNNRTG 3 cut(s) 102, 600, 668
Sse9I AATT 2 cut(s) 137, 588
SsiI CCGC 3 cut(s) 576, 827, 935
SspMI CTAG 1 cut(s) 399
StyD4I CCNGG 2 cut(s) 270, 912
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 1 cut(s) 853
TaiI ACGT 1 cut(s) 690
TaqI TCGA 4 cut(s) 173, 228, 232, 352
TasI AATT 2 cut(s) 137, 588
TfiI GAWTC 3 cut(s) 158, 413, 931
Tru1I TTAA 6 cut(s) 183, 419, 465, 587, 611, 675
Tru9I TTAA 6 cut(s) 183, 419, 465, 587, 611, 675
TscAI CASTG 2 cut(s) 548, 573
TseFI GTSAC 1 cut(s) 778
TseI GCWGC 1 cut(s) 191
Tsp45I GTSAC 1 cut(s) 778
TspDTI ATGAA 4 cut(s) 17, 131, 377, 944
TspGWI ACGGA 2 cut(s) 298, 632
TspRI CASTG 2 cut(s) 548, 573
VpaK11BI GGWCC 1 cut(s) 916
VspI ATTAAT 1 cut(s) 587
XbaI TCTAGA 1 cut(s) 398
XceI RCATGY 1 cut(s) 673
XmiI GTMKAC 1 cut(s) 178
XspI CTAG 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.