MD17G1012700.v1.1

Nucleotide-diphospho-sugar transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0022000
Physical Location & Seq
Reverse (-)
1110714 .. 1111589
876 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1012700.v1.1.491

Sequence Viewer

Length: 789 bp
ATGCCAGATAGAACGATCATACTGACGATTGTTGAGGAAGCATGGACTGGTTCTGGCTCCGTCCTCGATCTCTTCCTCGAGAGCTTTCGGGTTGGCCAAGGGACGAAGAGGCTCTTGAATCACTTGCTCATTGCCACTGTTGGTAAGGGAGCTTTTGAGTACTGCAAGTCCGTGCATCCCCATTGCTTCAAGCTCGCGCCACTACGACTGTCGAAACCTGCTGCCGGAAAGCAACTTCTCGGTCACGGTCGGGAGGGAATCGACCTGCTACATAGAGTGATTCAACTGGGATACAATCTGATTTTCACAGAGGCAGATGTTATGTGGTTCAGAAATCCGGTTACAGAATTTGACTCTCAAAAGGAAGTCACAATTCCTTGTGACCTCGATTCGGAAAACGCAGGCAACAAACAGGATAGGGGAATCTTTTTTCTGAAATCAGATGTTATATCACTCGAATTCTTCGAGTACTTGAACTTGGTCGGGATTCTGTACCCGAGTATTCCTCTTGGATCTCCCTGTGAGATTGTAACACGAGAGGAGATTACCAAAATGCTTGGAATGCGAGTGCAGATTATCGACACAGCTTATTTTGGTGGGTTTTGTCAGCCACTTGGGAACTACAGTGAGGTTTATACAATGCAAGCAAACTGCTGTGAAAATATCGAAAGTAAAGTCCACGATCTCAAGCTTGTCCTAGATGATTGGCGCAGTATCACAGGTCGTTCAGCAAATAATAGTTCGGGGCAATCACCTTCATGGAGAGCCCCAAACAAATGCATTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nucleotid_trans

Protein Analysis

263

Amino Acids

29.36

Weight (kDa)

5.89

Isoelectric Point (pI)

36.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleotid_trans PF03407 38 - 229 5e-27 Nucleotide-diphospho-sugar transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0022000)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40900
malus_domestica MD17G1012700.v1.1
prunus_persica Prupe.3G305000_v2.0.a1 Prupe.3G305000_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 226, 273
AccII CGCG 1 cut(s) 197
AclWI GGATC 1 cut(s) 520
AcoI YGGCCR 1 cut(s) 94
AcsI RAATTY 2 cut(s) 347, 458
AfaI GTAC 3 cut(s) 161, 470, 494
AfiI CCNNNNNNNGG 2 cut(s) 224, 391
AgsI TTSAA 5 cut(s) 118, 190, 284, 475, 785
AluBI AGCT 5 cut(s) 84, 152, 193, 587, 691
AluI AGCT 5 cut(s) 84, 152, 193, 587, 691
AlwI GGATC 1 cut(s) 520
Ama87I CYCGRG 2 cut(s) 77, 496
AoxI GGCC 1 cut(s) 94
ApeKI GCWGC 1 cut(s) 221
ApoI RAATTY 2 cut(s) 347, 458
ArsI GACNNNNNNTTYG 2 cut(s) 660, 692
AspLEI GCGC 2 cut(s) 199, 711
AsuHPI GGTGA 1 cut(s) 744
AvaI CYCGRG 2 cut(s) 77, 496
BalI TGGCCA 1 cut(s) 96
BanII GRGCYC 1 cut(s) 769
BauI CACGAG 1 cut(s) 534
BbvI GCAGC 1 cut(s) 208
BciVI GTATCC 1 cut(s) 284
BfaI CTAG 1 cut(s) 698
BfmI CTRYAG 1 cut(s) 622
BfuAI ACCTGC 2 cut(s) 226, 273
BfuI GTATCC 1 cut(s) 284
BisI GCNGC 1 cut(s) 222
BlsI GCNGC 1 cut(s) 223
BmcAI AGTACT 2 cut(s) 161, 470
BmeT110I CYCGRG 2 cut(s) 77, 496
BmiI GGNNCC 1 cut(s) 58
BmrI ACTGGG 1 cut(s) 296
BmsI GCATC 1 cut(s) 184
BmuI ACTGGG 1 cut(s) 296
BplI GAGNNNNNCTC 2 cut(s) 490, 522
BpuEI CTTGAG 1 cut(s) 671
BsaJI CCNNGG 1 cut(s) 97
BsaWI WCCGGW 1 cut(s) 337
Bsc4I CCNNNNNNNGG 2 cut(s) 224, 391
Bse1I ACTGG 2 cut(s) 52, 291
Bse3DI GCAATG 2 cut(s) 129, 181
BseDI CCNNGG 1 cut(s) 97
BseGI GGATG 1 cut(s) 175
BseLI CCNNNNNNNGG 2 cut(s) 224, 391
BseMI GCAATG 2 cut(s) 129, 181
BseNI ACTGG 2 cut(s) 52, 291
BseRI GAGGAG 1 cut(s) 554
BseXI GCAGC 1 cut(s) 208
BsgI GTGCAG 1 cut(s) 590
Bsh1236I CGCG 1 cut(s) 197
Bsh1285I CGRYCG 1 cut(s) 250
BshFI GGCC 1 cut(s) 96
BsiEI CGRYCG 1 cut(s) 250
BsiHKCI CYCGRG 2 cut(s) 77, 496
BsiSI CCGG 2 cut(s) 225, 338
BslFI GGGAC 1 cut(s) 115
BslI CCNNNNNNNGG 2 cut(s) 224, 391
BsmFI GGGAC 1 cut(s) 115
BsmI GAATGC 2 cut(s) 567, 780
BsnI GGCC 1 cut(s) 96
BsoBI CYCGRG 2 cut(s) 77, 496
Bsp1286I GDGCHC 1 cut(s) 769
Bsp143I GATC 4 cut(s) 15, 67, 512, 682
BspANI GGCC 1 cut(s) 96
BspFNI CGCG 1 cut(s) 197
BspLI GGNNCC 1 cut(s) 58
BspMI ACCTGC 2 cut(s) 226, 273
BspPI GGATC 1 cut(s) 520
BsrDI GCAATG 2 cut(s) 129, 181
BsrI ACTGG 2 cut(s) 52, 291
BssECI CCNNGG 1 cut(s) 97
BssMI GATC 4 cut(s) 15, 67, 512, 682
BssSI CACGAG 1 cut(s) 534
BssT1I CCWWGG 1 cut(s) 97
Bst2BI CACGAG 1 cut(s) 534
Bst4CI ACNGT 4 cut(s) 139, 210, 248, 626
Bst6I CTCTTC 2 cut(s) 77, 101
BstC8I GCNNGC 3 cut(s) 195, 403, 645
BstF5I GGATG 1 cut(s) 175
BstFNI CGCG 1 cut(s) 197
BstHHI GCGC 2 cut(s) 199, 711
BstKTI GATC 4 cut(s) 18, 70, 515, 685
BstMBI GATC 4 cut(s) 15, 67, 512, 682
BstMCI CGRYCG 1 cut(s) 250
BstMWI GCNNNNNNNGC 1 cut(s) 562
BstSFI CTRYAG 1 cut(s) 622
BstUI CGCG 1 cut(s) 197
BstV1I GCAGC 1 cut(s) 208
BstX2I RGATCY 1 cut(s) 512
BstYI RGATCY 1 cut(s) 512
BsuI GTATCC 1 cut(s) 284
BsuRI GGCC 1 cut(s) 96
BtsCI GGATG 1 cut(s) 175
BtsIMutI CAGTG 2 cut(s) 135, 631
BveI ACCTGC 2 cut(s) 226, 273
Cac8I GCNNGC 3 cut(s) 195, 403, 645
CfoI GCGC 2 cut(s) 199, 711
Csp6I GTAC 3 cut(s) 160, 469, 493
CviAII CATG 2 cut(s) 42, 759
CviQI GTAC 3 cut(s) 160, 469, 493
DpnI GATC 4 cut(s) 17, 69, 514, 684
DpnII GATC 4 cut(s) 15, 67, 512, 682
EaeI YGGCCR 1 cut(s) 94
Eam1104I CTCTTC 2 cut(s) 77, 101
EarI CTCTTC 2 cut(s) 77, 101
Eco130I CCWWGG 1 cut(s) 97
Eco24I GRGCYC 1 cut(s) 769
Eco88I CYCGRG 2 cut(s) 77, 496
EcoRI GAATTC 1 cut(s) 458
EcoT14I CCWWGG 1 cut(s) 97
EcoT22I ATGCAT 1 cut(s) 782
EcoT38I GRGCYC 1 cut(s) 769
ErhI CCWWGG 1 cut(s) 97
FaeI CATG 2 cut(s) 45, 762
FaiI YATR 7 cut(s) 20, 43, 273, 323, 449, 636, 760
FalI AAGNNNNNCTT 2 cut(s) 98, 130
FaqI GGGAC 1 cut(s) 115
FatI CATG 2 cut(s) 41, 758
Fnu4HI GCNGC 1 cut(s) 222
FokI GGATG 1 cut(s) 162
FriOI GRGCYC 1 cut(s) 769
Fsp4HI GCNGC 1 cut(s) 222
FspBI CTAG 1 cut(s) 698
GlaI GCGC 2 cut(s) 198, 710
GluI GCNGC 1 cut(s) 222
HaeIII GGCC 1 cut(s) 96
HapII CCGG 2 cut(s) 225, 338
HhaI GCGC 2 cut(s) 199, 711
Hin1II CATG 2 cut(s) 45, 762
Hin6I GCGC 2 cut(s) 197, 709
HinP1I GCGC 2 cut(s) 197, 709
HindIII AAGCTT 1 cut(s) 689
HinfI GANTC 7 cut(s) 118, 258, 280, 353, 389, 423, 487
HpaII CCGG 2 cut(s) 225, 338
HphI GGTGA 1 cut(s) 744
Hpy166II GTNNAC 1 cut(s) 679
Hpy188I TCNGA 5 cut(s) 300, 332, 394, 435, 442
Hpy188III TCNNGA 4 cut(s) 79, 115, 251, 484
Hpy8I GTNNAC 1 cut(s) 679
HpyAV CCTTC 1 cut(s) 765
HpyCH4III ACNGT 4 cut(s) 139, 210, 248, 626
HpyCH4V TGCA 5 cut(s) 165, 175, 571, 643, 780
HpyF10VI GCNNNNNNNGC 1 cut(s) 562
Hsp92II CATG 2 cut(s) 45, 762
HspAI GCGC 2 cut(s) 197, 709
Kzo9I GATC 4 cut(s) 15, 67, 512, 682
LmnI GCTCC 2 cut(s) 62, 149
Lsp1109I GCAGC 1 cut(s) 208
LweI GCATC 1 cut(s) 184
MaeI CTAG 1 cut(s) 698
MaeIII GTNAC 5 cut(s) 242, 340, 367, 380, 529
MalI GATC 4 cut(s) 17, 69, 514, 684
MboI GATC 4 cut(s) 15, 67, 512, 682
MboII GAAGA 3 cut(s) 64, 118, 454
MflI RGATCY 1 cut(s) 512
MhlI GDGCHC 1 cut(s) 769
MlsI TGGCCA 1 cut(s) 96
MluCI AATT 3 cut(s) 347, 372, 458
MluNI TGGCCA 1 cut(s) 96
MlyI GAGTC 1 cut(s) 347
Mox20I TGGCCA 1 cut(s) 96
Mph1103I ATGCAT 1 cut(s) 782
MscI TGGCCA 1 cut(s) 96
MslI CAYNNNNRTG 1 cut(s) 757
Msp20I TGGCCA 1 cut(s) 96
MspI CCGG 2 cut(s) 225, 338
Mva1269I GAATGC 2 cut(s) 567, 780
MvnI CGCG 1 cut(s) 197
MwoI GCNNNNNNNGC 1 cut(s) 562
NdeII GATC 4 cut(s) 15, 67, 512, 682
NlaIII CATG 2 cut(s) 45, 762
NlaIV GGNNCC 1 cut(s) 58
NmuCI GTSAC 3 cut(s) 242, 367, 380
NsiI ATGCAT 1 cut(s) 782
PaeR7I CTCGAG 1 cut(s) 77
PcsI WCGNNNNNNNCGW 1 cut(s) 462
PctI GAATGC 2 cut(s) 567, 780
PfeI GAWTC 6 cut(s) 118, 258, 280, 389, 423, 487
PkrI GCNGC 1 cut(s) 223
PleI GAGTC 1 cut(s) 347
PpsI GAGTC 1 cut(s) 347
PspN4I GGNNCC 1 cut(s) 58
PsuI RGATCY 1 cut(s) 512
RsaI GTAC 3 cut(s) 161, 470, 494
RsaNI GTAC 3 cut(s) 160, 469, 493
RseI CAYNNNNRTG 1 cut(s) 757
SatI GCNGC 1 cut(s) 222
Sau3AI GATC 4 cut(s) 15, 67, 512, 682
ScaI AGTACT 2 cut(s) 161, 470
SchI GAGTC 1 cut(s) 347
SduI GDGCHC 1 cut(s) 769
SfaNI GCATC 1 cut(s) 184
SfcI CTRYAG 1 cut(s) 622
Sfr274I CTCGAG 1 cut(s) 77
SlaI CTCGAG 1 cut(s) 77
SmiMI CAYNNNNRTG 1 cut(s) 757
SmlI CTYRAG 2 cut(s) 77, 686
SmoI CTYRAG 2 cut(s) 77, 686
Sse9I AATT 3 cut(s) 347, 372, 458
SspMI CTAG 1 cut(s) 698
StyI CCWWGG 1 cut(s) 97
TaaI ACNGT 4 cut(s) 139, 210, 248, 626
TaqI TCGA 9 cut(s) 66, 78, 212, 261, 387, 456, 465, 579, 666
TaqII GACCGA 1 cut(s) 230
TasI AATT 3 cut(s) 347, 372, 458
TatI WGTACW 2 cut(s) 159, 468
TfiI GAWTC 6 cut(s) 118, 258, 280, 389, 423, 487
TscAI CASTG 2 cut(s) 142, 631
TseFI GTSAC 3 cut(s) 242, 367, 380
TseI GCWGC 1 cut(s) 221
Tsp45I GTSAC 3 cut(s) 242, 367, 380
TspDTI ATGAA 1 cut(s) 747
TspGWI ACGGA 2 cut(s) 49, 160
TspRI CASTG 2 cut(s) 142, 631
XapI RAATTY 2 cut(s) 347, 458
XhoI CTCGAG 1 cut(s) 77
XspI CTAG 1 cut(s) 698
ZrmI AGTACT 2 cut(s) 161, 470
Zsp2I ATGCAT 1 cut(s) 782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.