AT5G41330

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013177
Physical Location & Seq
Reverse (-)
16535339 .. 16538016
2678 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G41330.1

Sequence Viewer

Length: 1377 bp
ATGAATTTTCCGACGATCCCTCATGAATCGAACGTTGTCTCCATCAACGTCGGAGGCCGAATCTTTCAAACAACGAAGCAAACCTTAAGCCTAGCCGGAACCGATTCTCTCCTATCTCAACTCGCTACTGAGACAACTCGTTTCGTCGATCGTGATCCCGATTTGTTCTCCGTTCTTCTCTATATCCTCCGTACCGGAAACCTACCTGCTAGATCACGCGCCTTCGATGTTCGTGATCTCATCGATGAATCTAGATACTATGGAATCGAGTCTTTCTTAATCGATTCTCTCTCGAATTCGTCGCAGTTCGAGCCGTTCGATCTCCGTAGATCTAGGATTCTTCAATTGAACGGTCGAGATTCTCCGTCGAGTATCTCACCGACTGTAATCGGCGGAGGTCTCCACGTGGCGCACGGTAGCAAAATCACTTCGTTTGATTGGTCGTTGAGGCAAAAGTCGACTGTGTTGACTAATTTCTCCGCCGTGGATTCGCTTCTAGAGATATCTCCGGGAGTTTTAGCTGCCGGAGCTACCGATTTCCCTGGTTTGCAAATCATCGATCTCGATAACGGCGGATTCGTTCGTACGACTCTGAATTGGGAAAACGTTACTAGGTCTAGCTCAACGGTTCAAGCCATAGGTTCTTCTCATGAGTTTTTGTTCACTAGCTTTGAATCTAGTAGAAGGAACTCGAATTCGATTATGGTGTATGACCTTTCTAGCTTGTTACCTGTGTCTGAGATTGATCATTGTGAGATCTATGGCGCTGATATTGATTCTGCGATTCCATCGACTAAGTTGAAATGGATTCAGAGTTGTAATTTGTTGATGGTTTCTGGTTCTCATACTAGTCCTTCTGGTGTCAATGGTCACATAAGGTTTTGGGATGTTAGGTCAAGGAATATGGTTTGGGAGATTAAGGAGGCACAAGATTGTTTCTCTGATGTTACTGTCTCGGATAATCTCTCGGCGGTGTTCAAGGTCGGTGTGACTTCAGGGGAAGTTTTCTACGCCGATTTGAGGAGTTTAGGAACTAAGGATCCATGGGTTTGTCTTGGGGAAGAGAAGAAGAGAAACTTGAATGAAAGAAGAGGAGTTGGGTCTAAGATAGAGAGCTATGGGAATCATGTGTTTTGCAGTAGTAAAGGAAGTGGGATAGAGCTTTGGTCTGAAGTGATCACGGGTTTGGTGGGGAATGCAAGCCGGGATGTATTGGAAGAGAGGGTTTTTAGGAAGAATTCGTTGGGAAAATTAGCGGATTCAGGAGAAAACAAGATAACAGGATTGGCGTTTGGAGGAAATAGAATGTTTGTGACCCGAAAGGATCAGCAGTCTGTTCAGGTTTGGCAAAGTCCTAGTCGTGGAATATCTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB_2

Protein Analysis

458

Amino Acids

50.42

Weight (kDa)

5.96

Isoelectric Point (pI)

51.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB_2 PF02214 13 - 95 4.2e-12 BTB/POZ domain
Beta_prop_At2g24240 PF25279 132 - 450 9e-13 At2g24240-like, C-terminal beta propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41330 AT5G41330
fragaria_vesca FvH4_5g02710
malus_domestica MD06G1086200.v1.1 MD14G1107400.v1.1
prunus_persica Prupe.5G102800_v2.0.a1
pyrus_communis pycom06g08280 pycom14g10240
rosa_chinensis RchiOBHm_Chr7g0197241
rosa_laevigata RLG00000003948
rosa_multiflora Rmu_sc0010019.1_g000011
rosa_roxburghii Rroxscaffold_3G00258530
rosa_rugosa Rorug07G0039000
rosa_samantha Rh7AG163800 Rh7BG165600 Rh7CG172100 Rh7DG164900
rosa_wichuraiana Rw7G014280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 214
AccI GTMKAC 1 cut(s) 458
AccII CGCG 1 cut(s) 219
AciI CCGC 5 cut(s) 393, 480, 573, 971, 1256
AclI AACGTT 2 cut(s) 33, 606
AclWI GGATC 5 cut(s) 10, 149, 1034, 1047, 1332
AcsI RAATTY 4 cut(s) 4, 295, 694, 1237
AcuI CTGAAG 2 cut(s) 978, 1191
AcvI CACGTG 1 cut(s) 406
AfaI GTAC 2 cut(s) 193, 586
AfiI CCNNNNNNNGG 2 cut(s) 1020, 1361
AflII CTTAAG 1 cut(s) 85
AgsI TTSAA 8 cut(s) 68, 344, 349, 632, 674, 802, 979, 1081
AhlI ACTAGT 1 cut(s) 848
AjnI CCWGG 1 cut(s) 541
AjuI GAANNNNNNNTTGG 2 cut(s) 1226, 1258
AloI GAACNNNNNNTCC 4 cut(s) 23, 55, 1024, 1056
AluBI AGCT 7 cut(s) 521, 530, 621, 669, 723, 1116, 1162
AluI AGCT 7 cut(s) 521, 530, 621, 669, 723, 1116, 1162
Alw26I GTCTC 4 cut(s) 43, 125, 404, 958
AlwI GGATC 5 cut(s) 10, 149, 1034, 1047, 1332
AoxI GGCC 1 cut(s) 55
ApeKI GCWGC 1 cut(s) 521
ApoI RAATTY 4 cut(s) 4, 295, 694, 1237
ArsI GACNNNNNNTTYG 2 cut(s) 1342, 1374
Asp700I GAANNNNTTC 1 cut(s) 103
AspLEI GCGC 3 cut(s) 221, 412, 767
AsuC2I CCSGG 2 cut(s) 510, 1205
AsuHPI GGTGA 1 cut(s) 369
BamHI GGATCC 1 cut(s) 1039
BbrPI CACGTG 1 cut(s) 406
BbvI GCAGC 1 cut(s) 508
BccI CCATC 3 cut(s) 50, 796, 823
BceAI ACGGC 3 cut(s) 298, 467, 586
BciT130I CCWGG 1 cut(s) 543
BclI TGATCA 2 cut(s) 745, 1176
BcnI CCSGG 2 cut(s) 510, 1205
BcoDI GTCTC 4 cut(s) 43, 125, 404, 958
BcuI ACTAGT 1 cut(s) 848
BfoI RGCGCY 1 cut(s) 768
BfrI CTTAAG 1 cut(s) 85
BfuAI ACCTGC 1 cut(s) 214
BglII AGATCT 2 cut(s) 329, 756
BisI GCNGC 1 cut(s) 522
BlsI GCNGC 1 cut(s) 523
Bme1390I CCNGG 3 cut(s) 510, 543, 1205
BmiI GGNNCC 2 cut(s) 100, 1041
BmrFI CCNGG 3 cut(s) 510, 543, 1205
BpuMI CCSGG 2 cut(s) 510, 1205
Bsa29I ATCGAT 3 cut(s) 243, 282, 558
BsaAI YACGTR 1 cut(s) 406
BsaBI GATNNNNATC 1 cut(s) 153
BsaI GGTCTC 1 cut(s) 404
BsaJI CCNNGG 3 cut(s) 483, 541, 1043
BsaWI WCCGGW 1 cut(s) 194
BsaXI ACNNNNNCTCC 2 cut(s) 23, 53
Bsc4I CCNNNNNNNGG 2 cut(s) 1020, 1361
Bse8I GATNNNNATC 1 cut(s) 153
BseBI CCWGG 1 cut(s) 543
BseCI ATCGAT 3 cut(s) 243, 282, 558
BseDI CCNNGG 3 cut(s) 483, 541, 1043
BseGI GGATG 2 cut(s) 892, 1213
BseJI GATNNNNATC 1 cut(s) 153
BseLI CCNNNNNNNGG 2 cut(s) 1020, 1361
BseMII CTCAG 2 cut(s) 120, 729
BseRI GAGGAG 2 cut(s) 1036, 1107
BseXI GCAGC 1 cut(s) 508
Bsh1236I CGCG 1 cut(s) 219
Bsh1285I CGRYCG 2 cut(s) 151, 355
BshFI GGCC 1 cut(s) 57
BshVI ATCGAT 3 cut(s) 243, 282, 558
BsiEI CGRYCG 2 cut(s) 151, 355
BsiSI CCGG 5 cut(s) 96, 195, 509, 525, 1204
BsiWI CGTACG 1 cut(s) 584
BslI CCNNNNNNNGG 2 cut(s) 1020, 1361
BsmAI GTCTC 4 cut(s) 43, 125, 404, 958
BsmI GAATGC 1 cut(s) 1201
BsnI GGCC 1 cut(s) 57
Bso31I GGTCTC 1 cut(s) 404
Bsp19I CCATGG 1 cut(s) 1043
BspACI CCGC 5 cut(s) 393, 480, 573, 971, 1256
BspANI GGCC 1 cut(s) 57
BspCNI CTCAG 2 cut(s) 121, 730
BspDI ATCGAT 3 cut(s) 243, 282, 558
BspFNI CGCG 1 cut(s) 219
BspHI TCATGA 2 cut(s) 22, 649
BspLI GGNNCC 2 cut(s) 100, 1041
BspMI ACCTGC 1 cut(s) 214
BspPI GGATC 5 cut(s) 10, 149, 1034, 1047, 1332
BspTI CTTAAG 1 cut(s) 85
BspTNI GGTCTC 1 cut(s) 404
BssECI CCNNGG 3 cut(s) 483, 541, 1043
BssT1I CCWWGG 1 cut(s) 1043
Bst2UI CCWGG 1 cut(s) 543
Bst4CI ACNGT 6 cut(s) 353, 385, 416, 463, 628, 952
Bst6I CTCTTC 4 cut(s) 1056, 1064, 1084, 1212
BstAFI CTTAAG 1 cut(s) 85
BstBAI YACGTR 1 cut(s) 406
BstC8I GCNNGC 1 cut(s) 1201
BstDEI CTNAG 5 cut(s) 129, 738, 795, 1035, 1104
BstDSI CCRYGG 2 cut(s) 483, 1043
BstF5I GGATG 2 cut(s) 892, 1213
BstFNI CGCG 1 cut(s) 219
BstH2I RGCGCY 1 cut(s) 768
BstHHI GCGC 3 cut(s) 221, 412, 767
BstMAI GTCTC 4 cut(s) 43, 125, 404, 958
BstMCI CGRYCG 2 cut(s) 151, 355
BstMWI GCNNNNNNNGC 2 cut(s) 310, 527
BstNI CCWGG 1 cut(s) 543
BstSCI CCNGG 3 cut(s) 508, 541, 1203
BstUI CGCG 1 cut(s) 219
BstV1I GCAGC 1 cut(s) 508
BstX2I RGATCY 3 cut(s) 329, 756, 1039
BstYI RGATCY 3 cut(s) 329, 756, 1039
Bsu15I ATCGAT 3 cut(s) 243, 282, 558
BsuRI GGCC 1 cut(s) 57
BsuTUI ATCGAT 3 cut(s) 243, 282, 558
BtgI CCRYGG 2 cut(s) 483, 1043
BtsCI GGATG 2 cut(s) 892, 1213
BveI ACCTGC 1 cut(s) 214
Cac8I GCNNGC 1 cut(s) 1201
CciI TCATGA 2 cut(s) 22, 649
CfoI GCGC 3 cut(s) 221, 412, 767
ClaI ATCGAT 3 cut(s) 243, 282, 558
Csp6I GTAC 2 cut(s) 192, 585
CviAII CATG 4 cut(s) 23, 650, 1044, 1127
CviQI GTAC 2 cut(s) 192, 585
DdeI CTNAG 5 cut(s) 129, 738, 795, 1035, 1104
Eam1104I CTCTTC 4 cut(s) 1056, 1064, 1084, 1212
EarI CTCTTC 4 cut(s) 1056, 1064, 1084, 1212
EciI GGCGGA 3 cut(s) 408, 469, 588
Eco130I CCWWGG 1 cut(s) 1043
Eco31I GGTCTC 1 cut(s) 404
Eco32I GATATC 1 cut(s) 504
Eco57I CTGAAG 2 cut(s) 978, 1191
Eco72I CACGTG 1 cut(s) 406
EcoRI GAATTC 3 cut(s) 295, 694, 1237
EcoRII CCWGG 1 cut(s) 541
EcoRV GATATC 1 cut(s) 504
EcoT14I CCWWGG 1 cut(s) 1043
ErhI CCWWGG 1 cut(s) 1043
FaeI CATG 4 cut(s) 26, 653, 1047, 1130
FalI AAGNNNNNCTT 4 cut(s) 68, 100, 1061, 1093
FatI CATG 4 cut(s) 22, 649, 1043, 1126
FbaI TGATCA 2 cut(s) 745, 1176
FblI GTMKAC 1 cut(s) 458
Fnu4HI GCNGC 1 cut(s) 522
FokI GGATG 2 cut(s) 899, 1220
Fsp4HI GCNGC 1 cut(s) 522
GlaI GCGC 3 cut(s) 220, 411, 766
GluI GCNGC 1 cut(s) 522
HaeII RGCGCY 1 cut(s) 768
HaeIII GGCC 1 cut(s) 57
HapII CCGG 5 cut(s) 96, 195, 509, 525, 1204
HhaI GCGC 3 cut(s) 221, 412, 767
Hin1II CATG 4 cut(s) 26, 653, 1047, 1130
Hin6I GCGC 3 cut(s) 219, 410, 765
HinP1I GCGC 3 cut(s) 219, 410, 765
HincII GTYRAC 2 cut(s) 459, 468
HindII GTYRAC 2 cut(s) 459, 468
HpaII CCGG 5 cut(s) 96, 195, 509, 525, 1204
HphI GGTGA 1 cut(s) 369
Hpy166II GTNNAC 3 cut(s) 459, 468, 663
Hpy188I TCNGA 8 cut(s) 12, 53, 594, 739, 813, 943, 958, 1171
Hpy8I GTNNAC 3 cut(s) 459, 468, 663
Hpy99I CGWCG 5 cut(s) 16, 53, 149, 304, 370
HpyAV CCTTC 3 cut(s) 232, 678, 864
HpyCH4III ACNGT 6 cut(s) 353, 385, 416, 463, 628, 952
HpyCH4IV ACGT 4 cut(s) 33, 48, 405, 606
HpyCH4V TGCA 3 cut(s) 550, 1137, 1199
HpyF10VI GCNNNNNNNGC 2 cut(s) 310, 527
HpyF3I CTNAG 5 cut(s) 129, 738, 795, 1035, 1104
HpySE526I ACGT 4 cut(s) 33, 48, 405, 606
Hsp92II CATG 4 cut(s) 26, 653, 1047, 1130
HspAI GCGC 3 cut(s) 219, 410, 765
Ksp22I TGATCA 2 cut(s) 745, 1176
LmnI GCTCC 1 cut(s) 527
Lsp1109I GCAGC 1 cut(s) 508
MaeII ACGT 4 cut(s) 33, 48, 405, 606
MaeIII GTNAC 6 cut(s) 607, 726, 869, 946, 988, 1312
MboII GAAGA 9 cut(s) 167, 332, 636, 1073, 1078, 1081, 1101, 1229, 1246
MfeI CAATTG 1 cut(s) 344
MflI RGATCY 3 cut(s) 329, 756, 1039
MluCI AATT 9 cut(s) 4, 295, 344, 472, 595, 694, 820, 1237, 1250
MlyI GAGTC 2 cut(s) 278, 583
MmeI TCCRAC 2 cut(s) 31, 35
MroXI GAANNNNTTC 1 cut(s) 103
MseI TTAA 3 cut(s) 86, 278, 918
MspCI CTTAAG 1 cut(s) 85
MspI CCGG 5 cut(s) 96, 195, 509, 525, 1204
MspR9I CCNGG 3 cut(s) 510, 543, 1205
MunI CAATTG 1 cut(s) 344
Mva1269I GAATGC 1 cut(s) 1201
MvaI CCWGG 1 cut(s) 543
MvnI CGCG 1 cut(s) 219
MwoI GCNNNNNNNGC 2 cut(s) 310, 527
NciI CCSGG 2 cut(s) 510, 1205
NcoI CCATGG 1 cut(s) 1043
NlaIII CATG 4 cut(s) 26, 653, 1047, 1130
NlaIV GGNNCC 2 cut(s) 100, 1041
NmeAIII GCCGAG 1 cut(s) 947
NmuCI GTSAC 3 cut(s) 869, 988, 1312
PagI TCATGA 2 cut(s) 22, 649
PcsI WCGNNNNNNNCGW 2 cut(s) 315, 576
PctI GAATGC 1 cut(s) 1201
PdmI GAANNNNTTC 1 cut(s) 103
Pfl23II CGTACG 1 cut(s) 584
PfoI TCCNGGA 1 cut(s) 508
PkrI GCNGC 1 cut(s) 523
Ple19I CGATCG 1 cut(s) 151
PleI GAGTC 2 cut(s) 277, 583
PmaCI CACGTG 1 cut(s) 406
PmlI CACGTG 1 cut(s) 406
PpsI GAGTC 2 cut(s) 277, 583
Ppu21I YACGTR 1 cut(s) 406
Psp1406I AACGTT 2 cut(s) 33, 606
Psp6I CCWGG 1 cut(s) 541
PspCI CACGTG 1 cut(s) 406
PspGI CCWGG 1 cut(s) 541
PspLI CGTACG 1 cut(s) 584
PspN4I GGNNCC 2 cut(s) 100, 1041
PsuI RGATCY 3 cut(s) 329, 756, 1039
PvuI CGATCG 1 cut(s) 151
RsaI GTAC 2 cut(s) 193, 586
RsaNI GTAC 2 cut(s) 192, 585
SalI GTCGAC 1 cut(s) 457
SaqAI TTAA 3 cut(s) 86, 278, 918
SatI GCNGC 1 cut(s) 522
SchI GAGTC 2 cut(s) 278, 583
ScrFI CCNGG 3 cut(s) 510, 543, 1205
SmlI CTYRAG 1 cut(s) 85
SmoI CTYRAG 1 cut(s) 85
SpeI ACTAGT 1 cut(s) 848
Sse9I AATT 9 cut(s) 4, 295, 344, 472, 595, 694, 820, 1237, 1250
SsiI CCGC 5 cut(s) 393, 480, 573, 971, 1256
StyD4I CCNGG 3 cut(s) 508, 541, 1203
StyI CCWWGG 1 cut(s) 1043
TaaI ACNGT 6 cut(s) 353, 385, 416, 463, 628, 952
TaiI ACGT 4 cut(s) 36, 51, 408, 609
TasI AATT 9 cut(s) 4, 295, 344, 472, 595, 694, 820, 1237, 1250
Tru1I TTAA 3 cut(s) 86, 278, 918
Tru9I TTAA 3 cut(s) 86, 278, 918
TseFI GTSAC 3 cut(s) 869, 988, 1312
TseI GCWGC 1 cut(s) 521
Tsp45I GTSAC 3 cut(s) 869, 988, 1312
TspDTI ATGAA 4 cut(s) 17, 39, 261, 1098
TspGWI ACGGA 4 cut(s) 160, 179, 314, 354
Vha464I CTTAAG 1 cut(s) 85
XapI RAATTY 4 cut(s) 4, 295, 694, 1237
XbaI TCTAGA 2 cut(s) 251, 496
XmiI GTMKAC 1 cut(s) 458
XmnI GAANNNNTTC 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.