Rorug07G0039000

BTB POZ domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0013177
Physical Location & Seq
Forward (+)
2737050 .. 2738218
1169 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0039000.1

Sequence Viewer

Length: 642 bp
ATGGAGGGAAAAAACGAAGTAAAACTACATGGAATGTGGGTTAGTGCTTACTCTAAGAGAGTGGAACTGGCCCTCAGACTCAAAGGCATACCTTATGAGTACATAGAAGAGGATTTGATCAACAAGAGCCGGTTGCTCCTCAAGTACAATCCAGTTCACAAGAAGGTACATGTACTCATCCACAATGGAAAACCTATCTCCGAGTCACACATCATCCTAGAATACATCGACGAAACTTGGAAGACTGCTCCTAAGCTCCTGCCTGAAGATCCTTACGAAAGAGCCAAAGTTCGATTCTGGGCTAGTTTTATCCAGCAACAGTTGTTTGAGAGCATACTCAAACTGGTGACAAGTCATGGGGAAGCACAAGAAAAAGCAGCCGCTGAAGTGATTGAGAGGCAGGGAGTCTTTGAAGAAGGAATGAAGGAGTATTTTGCAGGAGGTGATTCTTTCACTAATGAGAAGAATTGGGGGCTTCTAGACATATTGATGGGTTCAACATTTGGCGCTTACGAAGTTCATGAAGAAGTGTATGGTTTCAAACTGATGGACCCGGATAAGAATCCATTACTGTTCTCATGGATTACAAGATTGAAGGAGCATCCATTGATGAAGGGATTACTGCCTCCTCATGAGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB_2

Protein Analysis

213

Amino Acids

24.68

Weight (kDa)

6.01

Isoelectric Point (pI)

30.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_N PF02798 6 - 78 3.1e-14 Glutathione S-transferase, N-terminal domain
GST_N_3 PF13417 9 - 79 4.3e-13 Glutathione S-transferase, N-terminal domain
GST_N_2 PF13409 15 - 79 8.1e-12 Glutathione S-transferase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41330 AT5G41330
fragaria_vesca FvH4_5g02710
malus_domestica MD06G1086200.v1.1 MD14G1107400.v1.1
prunus_persica Prupe.5G102800_v2.0.a1
pyrus_communis pycom06g08280 pycom14g10240
rosa_chinensis RchiOBHm_Chr7g0197241
rosa_laevigata RLG00000003948
rosa_multiflora Rmu_sc0010019.1_g000011
rosa_roxburghii Rroxscaffold_3G00258530
rosa_rugosa Rorug07G0039000
rosa_samantha Rh7AG163800 Rh7BG165600 Rh7CG172100 Rh7DG164900
rosa_wichuraiana Rw7G014280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 381
AclWI GGATC 1 cut(s) 263
AcuI CTGAAG 2 cut(s) 285, 405
AfaI GTAC 4 cut(s) 101, 146, 168, 174
AflIII ACRYGT 1 cut(s) 169
AgsI TTSAA 4 cut(s) 413, 498, 541, 595
AjuI GAANNNNNNNTTGG 2 cut(s) 278, 310
AluBI AGCT 1 cut(s) 256
AluI AGCT 1 cut(s) 256
AlwI GGATC 1 cut(s) 263
AlwNI CAGNNNCTG 1 cut(s) 383
AoxI GGCC 1 cut(s) 69
ApeKI GCWGC 1 cut(s) 377
AspLEI GCGC 1 cut(s) 509
AspS9I GGNCC 2 cut(s) 70, 550
AsuC2I CCSGG 1 cut(s) 554
AsuHPI GGTGA 2 cut(s) 358, 455
AvaII GGWCC 1 cut(s) 550
BarI GAAGNNNNNNTAC 2 cut(s) 9, 41
BbsI GAAGAC 1 cut(s) 248
BbvI GCAGC 1 cut(s) 389
BccI CCATC 2 cut(s) 484, 541
BclI TGATCA 1 cut(s) 117
BcnI CCSGG 1 cut(s) 554
BfaI CTAG 3 cut(s) 218, 303, 479
BfoI RGCGCY 1 cut(s) 510
BisI GCNGC 2 cut(s) 378, 381
BlsI GCNGC 2 cut(s) 379, 382
Bme1390I CCNGG 1 cut(s) 554
Bme18I GGWCC 1 cut(s) 550
BmgT120I GGNCC 2 cut(s) 70, 550
BmiI GGNNCC 1 cut(s) 552
BmrFI CCNGG 1 cut(s) 554
BmsI GCATC 1 cut(s) 610
BpiI GAAGAC 1 cut(s) 248
Bpu10I CCTNAGC 1 cut(s) 252
BpuEI CTTGAG 1 cut(s) 125
BpuMI CCSGG 1 cut(s) 554
BsaBI GATNNNNATC 1 cut(s) 561
Bse118I RCCGGY 1 cut(s) 129
Bse1I ACTGG 3 cut(s) 72, 152, 348
Bse8I GATNNNNATC 1 cut(s) 561
BseGI GGATG 3 cut(s) 177, 213, 601
BseJI GATNNNNATC 1 cut(s) 561
BseMII CTCAG 1 cut(s) 88
BseNI ACTGG 3 cut(s) 72, 152, 348
BseRI GAGGAG 2 cut(s) 128, 618
BseXI GCAGC 1 cut(s) 389
BshFI GGCC 1 cut(s) 71
BsiSI CCGG 2 cut(s) 130, 554
BsnI GGCC 1 cut(s) 71
Bsp143I GATC 2 cut(s) 117, 268
BspACI CCGC 1 cut(s) 381
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 1 cut(s) 87
BspHI TCATGA 3 cut(s) 520, 631, 638
BspLI GGNNCC 1 cut(s) 552
BspPI GGATC 1 cut(s) 263
BsrFI RCCGGY 1 cut(s) 129
BsrI ACTGG 3 cut(s) 72, 152, 348
BssAI RCCGGY 1 cut(s) 129
BssMI GATC 2 cut(s) 117, 268
Bst4CI ACNGT 2 cut(s) 321, 573
Bst6I CTCTTC 1 cut(s) 102
BstDEI CTNAG 3 cut(s) 54, 74, 252
BstF5I GGATG 3 cut(s) 177, 213, 601
BstH2I RGCGCY 1 cut(s) 510
BstHHI GCGC 1 cut(s) 509
BstKTI GATC 2 cut(s) 120, 271
BstMBI GATC 2 cut(s) 117, 268
BstNSI RCATGY 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 552
BstV1I GCAGC 1 cut(s) 389
BstV2I GAAGAC 1 cut(s) 248
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
BsuRI GGCC 1 cut(s) 71
BtsCI GGATG 3 cut(s) 177, 213, 601
CaiI CAGNNNCTG 1 cut(s) 383
CciI TCATGA 3 cut(s) 520, 631, 638
CfoI GCGC 1 cut(s) 509
Cfr10I RCCGGY 1 cut(s) 129
Cfr13I GGNCC 2 cut(s) 70, 550
Csp6I GTAC 4 cut(s) 100, 145, 167, 173
CviAII CATG 7 cut(s) 29, 170, 356, 521, 579, 632, 639
CviJI RGCY 7 cut(s) 71, 129, 256, 284, 302, 380, 475
CviKI_1 RGCY 7 cut(s) 71, 129, 256, 284, 302, 380, 475
CviQI GTAC 4 cut(s) 100, 145, 167, 173
DdeI CTNAG 3 cut(s) 54, 74, 252
DpnI GATC 2 cut(s) 119, 270
DpnII GATC 2 cut(s) 117, 268
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Eco47I GGWCC 1 cut(s) 550
Eco57I CTGAAG 2 cut(s) 285, 405
FaeI CATG 7 cut(s) 32, 173, 359, 524, 582, 635, 642
FatI CATG 7 cut(s) 28, 169, 355, 520, 578, 631, 638
FbaI TGATCA 1 cut(s) 117
Fnu4HI GCNGC 2 cut(s) 378, 381
FokI GGATG 3 cut(s) 164, 200, 588
Fsp4HI GCNGC 2 cut(s) 378, 381
FspBI CTAG 3 cut(s) 218, 303, 479
GlaI GCGC 1 cut(s) 508
GluI GCNGC 2 cut(s) 378, 381
HaeII RGCGCY 1 cut(s) 510
HaeIII GGCC 1 cut(s) 71
HapII CCGG 2 cut(s) 130, 554
HhaI GCGC 1 cut(s) 509
Hin1II CATG 7 cut(s) 32, 173, 359, 524, 582, 635, 642
Hin6I GCGC 1 cut(s) 507
HinP1I GCGC 1 cut(s) 507
HinfI GANTC 7 cut(s) 78, 203, 294, 405, 446, 562, 635
HpaII CCGG 2 cut(s) 130, 554
HphI GGTGA 2 cut(s) 358, 455
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 2 cut(s) 77, 202
Hpy188III TCNNGA 4 cut(s) 479, 521, 632, 639
Hpy8I GTNNAC 1 cut(s) 157
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 5 cut(s) 157, 410, 418, 589, 607
HpyCH4III ACNGT 2 cut(s) 321, 573
HpyCH4V TGCA 1 cut(s) 437
HpyF3I CTNAG 3 cut(s) 54, 74, 252
Hsp92II CATG 7 cut(s) 32, 173, 359, 524, 582, 635, 642
HspAI GCGC 1 cut(s) 507
Ksp22I TGATCA 1 cut(s) 117
Kzo9I GATC 2 cut(s) 117, 268
LmnI GCTCC 4 cut(s) 141, 253, 261, 598
Lsp1109I GCAGC 1 cut(s) 389
LweI GCATC 1 cut(s) 610
MaeI CTAG 3 cut(s) 218, 303, 479
MaeIII GTNAC 2 cut(s) 204, 346
MalI GATC 2 cut(s) 119, 270
MboI GATC 2 cut(s) 117, 268
MboII GAAGA 6 cut(s) 119, 253, 278, 425, 475, 536
MflI RGATCY 1 cut(s) 268
MluCI AATT 1 cut(s) 466
MlyI GAGTC 3 cut(s) 72, 212, 414
MnlI CCTC 7 cut(s) 83, 103, 149, 390, 434, 636, 639
MslI CAYNNNNRTG 1 cut(s) 488
MspA1I CMGCKG 1 cut(s) 383
MspI CCGG 2 cut(s) 130, 554
MspR9I CCNGG 1 cut(s) 554
NciI CCSGG 1 cut(s) 554
NdeII GATC 2 cut(s) 117, 268
NlaIII CATG 7 cut(s) 32, 173, 359, 524, 582, 635, 642
NlaIV GGNNCC 1 cut(s) 552
NmuCI GTSAC 2 cut(s) 204, 346
NspI RCATGY 1 cut(s) 173
PagI TCATGA 3 cut(s) 520, 631, 638
PciI ACATGT 1 cut(s) 169
PfeI GAWTC 3 cut(s) 294, 446, 562
PkrI GCNGC 2 cut(s) 379, 382
PleI GAGTC 3 cut(s) 72, 211, 413
PpsI GAGTC 3 cut(s) 72, 211, 413
PscI ACATGT 1 cut(s) 169
PspN4I GGNNCC 1 cut(s) 552
PspPI GGNCC 2 cut(s) 70, 550
PstNI CAGNNNCTG 1 cut(s) 383
PsuI RGATCY 1 cut(s) 268
RsaI GTAC 4 cut(s) 101, 146, 168, 174
RsaNI GTAC 4 cut(s) 100, 145, 167, 173
RseI CAYNNNNRTG 1 cut(s) 488
SatI GCNGC 2 cut(s) 378, 381
Sau3AI GATC 2 cut(s) 117, 268
Sau96I GGNCC 2 cut(s) 70, 550
SchI GAGTC 3 cut(s) 72, 212, 414
ScrFI CCNGG 1 cut(s) 554
SetI ASST 5 cut(s) 94, 168, 196, 258, 445
SfaNI GCATC 1 cut(s) 610
SinI GGWCC 1 cut(s) 550
SmiMI CAYNNNNRTG 1 cut(s) 488
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse9I AATT 1 cut(s) 466
SsiI CCGC 1 cut(s) 381
SspMI CTAG 3 cut(s) 218, 303, 479
StyD4I CCNGG 1 cut(s) 552
TaaI ACNGT 2 cut(s) 321, 573
TaqI TCGA 2 cut(s) 228, 292
TasI AATT 1 cut(s) 466
TatI WGTACW 3 cut(s) 99, 144, 172
TauI GCSGC 1 cut(s) 383
TfiI GAWTC 3 cut(s) 294, 446, 562
TseFI GTSAC 2 cut(s) 204, 346
TseI GCWGC 1 cut(s) 377
Tsp45I GTSAC 2 cut(s) 204, 346
TspDTI ATGAA 4 cut(s) 437, 509, 537, 626
VpaK11BI GGWCC 1 cut(s) 550
XbaI TCTAGA 1 cut(s) 478
XceI RCATGY 1 cut(s) 173
XspI CTAG 3 cut(s) 218, 303, 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.