Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0019555

Physical Location & Seq

Genomic Coordinates Forward (+)

16675582 .. 16677525

Gene Structure 1944 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G41700.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCTTCGAAACGGATCTTGAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTGCAGAGAGTCCGTATTCAGGCGGTGTGTTTCTCGTTACCATTCACTTCCCTCCGGACTATCCATTCAAACCACCAAAGGTTGCATTTAGGACGAAGGTGTTTCACCCTAATATCAACAGCAACGGAAGCATTTGCCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAGGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGACCCTTTGGTACCAGAGATTGCACACATGTACAAAACCGACAGAGCCAAATACGAGGCTACTGCAAGAAACTGGACTCAGAAGTATGCCATGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009791 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022414 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051603 GO:0061458 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04013 ko04120 ko04141 ko04624 map04013 map04120 map04141 map04624

Pfam Domains

Protein Families

UQ_con

Protein Analysis

148

Amino Acids

16.53

Weight (kDa)

7.72

Isoelectric Point (pI)

42.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	5 - 141	1.2e-54	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0019555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41700 AT5G41700 AT5G41700 AT5G41700
malus_domestica	MD11G1052000.v1.1
pyrus_communis	pycom03g03940 pycom11g04240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	59
Acc65I	GGTACC	1 cut(s)	358
AccB1I	GGYRCC	1 cut(s)	358
AccIII	TCCGGA	1 cut(s)	172
AciI	CCGC	1 cut(s)	141
AclWI	GGATC	3 cut(s)	23, 42, 329
AcuI	CTGAAG	2 cut(s)	50, 102
AfaI	GTAC	2 cut(s)	360, 380
AfiI	CCNNNNNNNGG	1 cut(s)	137
AflIII	ACRYGT	2 cut(s)	87, 375
AgsI	TTSAA	3 cut(s)	22, 187, 268
AluBI	AGCT	2 cut(s)	28, 104
AluI	AGCT	2 cut(s)	28, 104
AlwI	GGATC	3 cut(s)	23, 42, 329
AlwNI	CAGNNNCTG	1 cut(s)	80
Aor13HI	TCCGGA	1 cut(s)	172
Asp718I	GGTACC	1 cut(s)	358
AspS9I	GGNCC	2 cut(s)	71, 116
AsuHPI	GGTGA	2 cut(s)	215, 283
AsuII	TTCGAA	1 cut(s)	8
AvaII	GGWCC	2 cut(s)	71, 116
BanI	GGYRCC	1 cut(s)	358
BanII	GRGCYC	1 cut(s)	284
BbsI	GAAGAC	1 cut(s)	90
BcgI	CGANNNNNNTGC	2 cut(s)	392, 426
BfmI	CTRYAG	2 cut(s)	61, 120
BfuAI	ACCTGC	1 cut(s)	59
Bme18I	GGWCC	2 cut(s)	71, 116
BmgT120I	GGNCC	2 cut(s)	71, 116
BmiI	GGNNCC	3 cut(s)	117, 281, 360
BpiI	GAAGAC	1 cut(s)	90
BpmI	CTGGAG	1 cut(s)	23
Bpu14I	TTCGAA	1 cut(s)	8
BsaBI	GATNNNNATC	1 cut(s)	339
BsaJI	CCNNGG	2 cut(s)	300, 438
BsaWI	WCCGGW	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
Bse1I	ACTGG	2 cut(s)	74, 425
Bse8I	GATNNNNATC	1 cut(s)	339
BseAI	TCCGGA	1 cut(s)	172
BseDI	CCNNGG	2 cut(s)	300, 438
BseJI	GATNNNNATC	1 cut(s)	339
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMII	CTCAG	1 cut(s)	440
BseNI	ACTGG	2 cut(s)	74, 425
BsgI	GTGCAG	1 cut(s)	87
BshNI	GGYRCC	1 cut(s)	358
BsiSI	CCGG	1 cut(s)	173
BslI	CCNNNNNNNGG	1 cut(s)	137
Bsp119I	TTCGAA	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	284
Bsp13I	TCCGGA	1 cut(s)	172
Bsp1407I	TGTACA	1 cut(s)	378
Bsp143I	GATC	3 cut(s)	15, 34, 334
Bsp19I	CCATGG	1 cut(s)	438
BspACI	CCGC	1 cut(s)	141
BspCNI	CTCAG	1 cut(s)	439
BspEI	TCCGGA	1 cut(s)	172
BspLI	GGNNCC	3 cut(s)	117, 281, 360
BspMAI	CTGCAG	2 cut(s)	65, 124
BspMI	ACCTGC	1 cut(s)	59
BspPI	GGATC	3 cut(s)	23, 42, 329
BspT104I	TTCGAA	1 cut(s)	8
BspT107I	GGYRCC	1 cut(s)	358
BsrGI	TGTACA	1 cut(s)	378
BsrI	ACTGG	2 cut(s)	74, 425
BssECI	CCNNGG	2 cut(s)	300, 438
BssMI	GATC	3 cut(s)	15, 34, 334
BssT1I	CCWWGG	2 cut(s)	300, 438
BstAUI	TGTACA	1 cut(s)	378
BstBI	TTCGAA	1 cut(s)	8
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	1 cut(s)	426
BstDSI	CCRYGG	1 cut(s)	438
BstKTI	GATC	3 cut(s)	18, 37, 337
BstMBI	GATC	3 cut(s)	15, 34, 334
BstMWI	GCNNNNNNNGC	1 cut(s)	246
BstNSI	RCATGY	2 cut(s)	91, 379
BstSFI	CTRYAG	2 cut(s)	61, 120
BstV2I	GAAGAC	1 cut(s)	90
BstX2I	RGATCY	3 cut(s)	15, 34, 334
BstYI	RGATCY	3 cut(s)	15, 34, 334
BtgI	CCRYGG	1 cut(s)	438
BtsI	GCAGTG	1 cut(s)	70
BtsIMutI	CAGTG	1 cut(s)	70
BveI	ACCTGC	1 cut(s)	59
Cac8I	GCNNGC	1 cut(s)	102
CaiI	CAGNNNCTG	1 cut(s)	80
Cfr13I	GGNCC	2 cut(s)	71, 116
Csp6I	GTAC	2 cut(s)	359, 379
CviAII	CATG	3 cut(s)	88, 376, 439
CviJI	RGCY	7 cut(s)	5, 28, 104, 282, 395, 407, 444
CviKI_1	RGCY	7 cut(s)	5, 28, 104, 282, 395, 407, 444
CviQI	GTAC	2 cut(s)	359, 379
DdeI	CTNAG	1 cut(s)	426
DpnI	GATC	3 cut(s)	17, 36, 336
DpnII	GATC	3 cut(s)	15, 34, 334
Eco130I	CCWWGG	2 cut(s)	300, 438
Eco24I	GRGCYC	1 cut(s)	284
Eco47I	GGWCC	2 cut(s)	71, 116
Eco57I	CTGAAG	2 cut(s)	50, 102
EcoO109I	RGGNCCY	1 cut(s)	116
EcoT14I	CCWWGG	2 cut(s)	300, 438
EcoT38I	GRGCYC	1 cut(s)	284
ErhI	CCWWGG	2 cut(s)	300, 438
FaeI	CATG	3 cut(s)	91, 379, 442
FaiI	YATR	6 cut(s)	89, 113, 319, 377, 435, 440
FatI	CATG	3 cut(s)	87, 375, 438
FriOI	GRGCYC	1 cut(s)	284
GsuI	CTGGAG	1 cut(s)	23
HapII	CCGG	1 cut(s)	173
Hin1II	CATG	3 cut(s)	91, 379, 442
HincII	GTYRAC	1 cut(s)	330
HindII	GTYRAC	1 cut(s)	330
HinfI	GANTC	2 cut(s)	127, 424
HpaI	GTTAAC	1 cut(s)	330
HpaII	CCGG	1 cut(s)	173
HphI	GGTGA	2 cut(s)	215, 283
Hpy166II	GTNNAC	1 cut(s)	330
Hpy188I	TCNGA	1 cut(s)	429
Hpy188III	TCNNGA	5 cut(s)	19, 40, 173, 313, 344
Hpy8I	GTNNAC	1 cut(s)	330
HpyAV	CCTTC	3 cut(s)	16, 25, 208
HpyCH4V	TGCA	6 cut(s)	63, 68, 122, 203, 371, 413
HpyF10VI	GCNNNNNNNGC	1 cut(s)	246
HpyF3I	CTNAG	1 cut(s)	426
Hsp92II	CATG	3 cut(s)	91, 379, 442
Kpn2I	TCCGGA	1 cut(s)	172
KpnI	GGTACC	1 cut(s)	362
KspAI	GTTAAC	1 cut(s)	330
Kzo9I	GATC	3 cut(s)	15, 34, 334
LmnI	GCTCC	2 cut(s)	25, 279
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	3 cut(s)	17, 36, 336
MboI	GATC	3 cut(s)	15, 34, 334
MboII	GAAGA	1 cut(s)	95
MflI	RGATCY	3 cut(s)	15, 34, 334
MhlI	GDGCHC	1 cut(s)	284
MluCI	AATT	1 cut(s)	108
MlyI	GAGTC	2 cut(s)	136, 418
MmeI	TCCRAC	1 cut(s)	77
MnlI	CCTC	5 cut(s)	60, 67, 180, 299, 397
MroI	TCCGGA	1 cut(s)	172
MseI	TTAA	1 cut(s)	329
MspI	CCGG	1 cut(s)	173
MwoI	GCNNNNNNNGC	1 cut(s)	246
NcoI	CCATGG	1 cut(s)	438
NdeII	GATC	3 cut(s)	15, 34, 334
NlaIII	CATG	3 cut(s)	91, 379, 442
NlaIV	GGNNCC	3 cut(s)	117, 281, 360
NspI	RCATGY	2 cut(s)	91, 379
NspV	TTCGAA	1 cut(s)	8
PciI	ACATGT	2 cut(s)	87, 375
PleI	GAGTC	2 cut(s)	135, 418
PpsI	GAGTC	2 cut(s)	135, 418
PpuMI	RGGWCCY	1 cut(s)	116
PscI	ACATGT	2 cut(s)	87, 375
Psp5II	RGGWCCY	1 cut(s)	116
PspN4I	GGNNCC	3 cut(s)	117, 281, 360
PspPI	GGNCC	2 cut(s)	71, 116
PspPPI	RGGWCCY	1 cut(s)	116
PstI	CTGCAG	2 cut(s)	65, 124
PstNI	CAGNNNCTG	1 cut(s)	80
PsuI	RGATCY	3 cut(s)	15, 34, 334
RsaI	GTAC	2 cut(s)	360, 380
RsaNI	GTAC	2 cut(s)	359, 379
SaqAI	TTAA	1 cut(s)	329
Sau3AI	GATC	3 cut(s)	15, 34, 334
Sau96I	GGNCC	2 cut(s)	71, 116
SchI	GAGTC	2 cut(s)	136, 418
SduI	GDGCHC	1 cut(s)	284
SetI	ASST	7 cut(s)	30, 59, 73, 106, 201, 219, 306
SfcI	CTRYAG	2 cut(s)	61, 120
SfuI	TTCGAA	1 cut(s)	8
SinI	GGWCC	2 cut(s)	71, 116
Sse9I	AATT	1 cut(s)	108
SsiI	CCGC	1 cut(s)	141
StyI	CCWWGG	2 cut(s)	300, 438
TaqI	TCGA	2 cut(s)	8, 314
TasI	AATT	1 cut(s)	108
TatI	WGTACW	1 cut(s)	378
Tru1I	TTAA	1 cut(s)	329
Tru9I	TTAA	1 cut(s)	329
TscAI	CASTG	1 cut(s)	70
TspDTI	ATGAA	1 cut(s)	83
TspGWI	ACGGA	3 cut(s)	28, 120, 258
TspRI	CASTG	1 cut(s)	70
VpaK11BI	GGWCC	2 cut(s)	71, 116
XceI	RCATGY	2 cut(s)	91, 379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.