Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0027304

Physical Location & Seq

Genomic Coordinates Forward (+)

17833636 .. 17835817

Gene Structure 2182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G44270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGAAACAAAAATCACATTTGTTTGGGAAGTTTGTCAGTTGGGCCTTGGCCCAATTAGTTTACCTGGTAGTCAGAAATGCATGCGGCCTGACTACTCTCTGGCATTAGTCGGAAAGCATTCCAAACTCGGGACAGACAGTGTGGTGGTCCTTCGTGGAGAAGTCCACTCTAAAGTACTTCGAGACTGTAAATCTAGAGACTGTACTATCTTGCTTGTTTTGCATAACTCTAAATCAAGACAGGTGAAGCCATCAAAAGGCAAAAGCTTGATGATGGGAGCAAACCCGGACAGAGAACATAAAGGTGCATTGCGTCTGCCGATGACACTAAAAAGGCGAAAGAATTCAGAGTTTGTGACATCTCAGAGAGTTCGTCCTAAACAACAGAGCTGCACAGAAATGAGAAAACTGAAAACTAAGCATGCGCTTCCTCTCTGTTTCACAAAGATTTTGGCAGCTCCAGCTATGCCCACACCACAAAGAAGTACACCACATCCTCCAGAATTTCAAGTCAACCACACTGATCAGACCACGAGATTCAAACGCTCTTATCCAAAATATTTTCTGAATCAAATTTCTGTTCTGGATAAACTAAAGGCCTCTTACAGAATTTTTCAAGAGTTTAATCTGCATGTGGACCATCGGCCTATCGAAAGGGCAGACTTTGACCATAAAATCAAAGAGAAAGAGATGATGTACAAGAGACATCTCGAAGAGGCGGAAGCCGCAAAAATGGTAGAGGAAGAGAGAGCTCTAAAACAACTGAGAAGGACAATCGTTCCTCAAACCAGACCAGTGTCAAACCTTAACAACCCATTCTTACCTCACAAGTCGAACAAGGAGACGACAAAACCAAATTCACCAAAGCTTAGAGTGATTAGAAGAATCGACAGGAGAACAATGATGATGGTTTCTCCTCACATGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0007346 GO:0008017 GO:0008092 GO:0008150 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010564 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022607 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032886 GO:0033043 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0050789 GO:0050794 GO:0051128 GO:0051225 GO:0051493 GO:0051726 GO:0060236 GO:0065007 GO:0070013 GO:0070507 GO:0070925 GO:0071840 GO:0090224 GO:0090307 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140014 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2 TPX2_importin

Protein Analysis

309

Amino Acids

35.89

Weight (kDa)

10.3

Isoelectric Point (pI)

54.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPX2	PF06886	208 - 284	1.4e-19	Targeting protein for Xklp2 (TPX2) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0027304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44270
rosa_chinensis	RchiOBHm_Chr2g0120361

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	85, 719, 726
AcsI	RAATTY	5 cut(s)	343, 503, 573, 609, 856
AfaI	GTAC	4 cut(s)	177, 205, 487, 698
AfiI	CCNNNNNNNGG	2 cut(s)	129, 257
AgsI	TTSAA	3 cut(s)	509, 541, 617
AjnI	CCWGG	1 cut(s)	64
AluBI	AGCT	6 cut(s)	267, 390, 458, 464, 752, 868
AluI	AGCT	6 cut(s)	267, 390, 458, 464, 752, 868
Alw21I	GWGCWC	1 cut(s)	754
Alw26I	GTCTC	4 cut(s)	177, 192, 697, 836
Ama87I	CYCGRG	1 cut(s)	128
AoxI	GGCC	5 cut(s)	43, 49, 86, 597, 644
ApeKI	GCWGC	2 cut(s)	390, 455
ApoI	RAATTY	5 cut(s)	343, 503, 573, 609, 856
Asp700I	GAANNNNTTC	2 cut(s)	118, 343
AspLEI	GCGC	1 cut(s)	427
AspS9I	GGNCC	4 cut(s)	43, 50, 148, 637
AsuC2I	CCSGG	1 cut(s)	287
AsuHPI	GGTGA	2 cut(s)	256, 852
AvaI	CYCGRG	1 cut(s)	128
AvaII	GGWCC	2 cut(s)	148, 637
BanII	GRGCYC	1 cut(s)	754
BauI	CACGAG	1 cut(s)	532
Bbv12I	GWGCWC	1 cut(s)	754
BbvI	GCAGC	2 cut(s)	377, 467
BccI	CCATC	4 cut(s)	259, 268, 648, 901
BciT130I	CCWGG	1 cut(s)	66
BclI	TGATCA	1 cut(s)	523
BcnI	CCSGG	1 cut(s)	287
BcoDI	GTCTC	4 cut(s)	177, 192, 697, 836
BfaI	CTAG	1 cut(s)	195
BisI	GCNGC	4 cut(s)	86, 391, 456, 726
BlsI	GCNGC	4 cut(s)	87, 392, 457, 727
BmcAI	AGTACT	1 cut(s)	177
Bme1390I	CCNGG	2 cut(s)	66, 287
Bme18I	GGWCC	2 cut(s)	148, 637
BmeT110I	CYCGRG	1 cut(s)	128
BmgT120I	GGNCC	4 cut(s)	43, 50, 148, 637
BmrFI	CCNGG	2 cut(s)	66, 287
BoxI	GACNNNNGTC	1 cut(s)	796
BpmI	CTGGAG	2 cut(s)	444, 483
BpuMI	CCSGG	1 cut(s)	287
BsaJI	CCNNGG	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	2 cut(s)	129, 257
Bse1I	ACTGG	1 cut(s)	794
Bse3DI	GCAATG	1 cut(s)	308
BseBI	CCWGG	1 cut(s)	66
BseDI	CCNNGG	1 cut(s)	46
BseGI	GGATG	1 cut(s)	493
BseLI	CCNNNNNNNGG	2 cut(s)	129, 257
BseMI	GCAATG	1 cut(s)	308
BseMII	CTCAG	2 cut(s)	377, 755
BseNI	ACTGG	1 cut(s)	794
BseRI	GAGGAG	1 cut(s)	906
BseXI	GCAGC	2 cut(s)	377, 467
BsgI	GTGCAG	1 cut(s)	376
BshFI	GGCC	5 cut(s)	45, 51, 88, 599, 646
BsiHKAI	GWGCWC	1 cut(s)	754
BsiHKCI	CYCGRG	1 cut(s)	128
BsiSI	CCGG	1 cut(s)	287
BslFI	GGGAC	1 cut(s)	145
BslI	CCNNNNNNNGG	2 cut(s)	129, 257
BsmAI	GTCTC	4 cut(s)	177, 192, 697, 836
BsmBI	CGTCTC	1 cut(s)	836
BsmFI	GGGAC	1 cut(s)	145
BsmI	GAATGC	1 cut(s)	118
BsnI	GGCC	5 cut(s)	45, 51, 88, 599, 646
BsoBI	CYCGRG	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	754
Bsp1407I	TGTACA	1 cut(s)	696
Bsp143I	GATC	1 cut(s)	523
BspACI	CCGC	3 cut(s)	85, 719, 726
BspANI	GGCC	5 cut(s)	45, 51, 88, 599, 646
BspCNI	CTCAG	2 cut(s)	376, 756
BsrDI	GCAATG	1 cut(s)	308
BsrGI	TGTACA	1 cut(s)	696
BsrI	ACTGG	1 cut(s)	794
BssECI	CCNNGG	1 cut(s)	46
BssMI	GATC	1 cut(s)	523
BssSI	CACGAG	1 cut(s)	532
BssT1I	CCWWGG	1 cut(s)	46
Bst2BI	CACGAG	1 cut(s)	532
Bst2UI	CCWGG	1 cut(s)	66
Bst4CI	ACNGT	3 cut(s)	140, 188, 203
Bst6I	CTCTTC	2 cut(s)	708, 738
BstAUI	TGTACA	1 cut(s)	696
BstC8I	GCNNGC	2 cut(s)	83, 423
BstDEI	CTNAG	4 cut(s)	363, 417, 764, 869
BstF5I	GGATG	1 cut(s)	493
BstHHI	GCGC	1 cut(s)	427
BstKTI	GATC	1 cut(s)	526
BstMAI	GTCTC	4 cut(s)	177, 192, 697, 836
BstMBI	GATC	1 cut(s)	523
BstMWI	GCNNNNNNNGC	3 cut(s)	220, 461, 725
BstNI	CCWGG	1 cut(s)	66
BstNSI	RCATGY	3 cut(s)	85, 425, 635
BstPAI	GACNNNNGTC	1 cut(s)	796
BstSCI	CCNGG	2 cut(s)	64, 285
BstV1I	GCAGC	2 cut(s)	377, 467
BsuRI	GGCC	5 cut(s)	45, 51, 88, 599, 646
BtsCI	GGATG	1 cut(s)	493
BtsIMutI	CAGTG	3 cut(s)	145, 519, 801
Cac8I	GCNNGC	2 cut(s)	83, 423
CfoI	GCGC	1 cut(s)	427
Cfr13I	GGNCC	4 cut(s)	43, 50, 148, 637
CseI	GACGC	1 cut(s)	302
CsiI	ACCWGGT	1 cut(s)	64
Csp6I	GTAC	4 cut(s)	176, 204, 486, 697
CviAII	CATG	4 cut(s)	82, 422, 632, 922
CviQI	GTAC	4 cut(s)	176, 204, 486, 697
DdeI	CTNAG	4 cut(s)	363, 417, 764, 869
DpnI	GATC	1 cut(s)	525
DpnII	GATC	1 cut(s)	523
Eam1104I	CTCTTC	2 cut(s)	708, 738
EarI	CTCTTC	2 cut(s)	708, 738
EciI	GGCGGA	1 cut(s)	734
Ecl136II	GAGCTC	1 cut(s)	752
Eco130I	CCWWGG	1 cut(s)	46
Eco147I	AGGCCT	1 cut(s)	599
Eco24I	GRGCYC	1 cut(s)	754
Eco47I	GGWCC	2 cut(s)	148, 637
Eco53kI	GAGCTC	1 cut(s)	752
Eco88I	CYCGRG	1 cut(s)	128
EcoICRI	GAGCTC	1 cut(s)	752
EcoRI	GAATTC	1 cut(s)	343
EcoRII	CCWGG	1 cut(s)	64
EcoT14I	CCWWGG	1 cut(s)	46
EcoT22I	ATGCAT	1 cut(s)	83
EcoT38I	GRGCYC	1 cut(s)	754
ErhI	CCWWGG	1 cut(s)	46
Esp3I	CGTCTC	1 cut(s)	836
FaeI	CATG	4 cut(s)	85, 425, 635, 925
FaiI	YATR	8 cut(s)	83, 225, 300, 423, 467, 633, 672, 923
FaqI	GGGAC	1 cut(s)	145
FatI	CATG	4 cut(s)	81, 421, 631, 921
FbaI	TGATCA	1 cut(s)	523
Fnu4HI	GCNGC	4 cut(s)	86, 391, 456, 726
FokI	GGATG	1 cut(s)	480
FriOI	GRGCYC	1 cut(s)	754
Fsp4HI	GCNGC	4 cut(s)	86, 391, 456, 726
FspBI	CTAG	1 cut(s)	195
GlaI	GCGC	1 cut(s)	426
GluI	GCNGC	4 cut(s)	86, 391, 456, 726
GsuI	CTGGAG	2 cut(s)	444, 483
HaeIII	GGCC	5 cut(s)	45, 51, 88, 599, 646
HapII	CCGG	1 cut(s)	287
HgaI	GACGC	1 cut(s)	302
HhaI	GCGC	1 cut(s)	427
Hin1II	CATG	4 cut(s)	85, 425, 635, 925
Hin6I	GCGC	1 cut(s)	425
HinP1I	GCGC	1 cut(s)	425
HincII	GTYRAC	1 cut(s)	514
HindII	GTYRAC	1 cut(s)	514
HindIII	AAGCTT	2 cut(s)	265, 866
HinfI	GANTC	3 cut(s)	537, 568, 885
HpaII	CCGG	1 cut(s)	287
HphI	GGTGA	2 cut(s)	256, 852
Hpy166II	GTNNAC	5 cut(s)	62, 166, 488, 514, 637
Hpy188I	TCNGA	6 cut(s)	75, 113, 349, 366, 528, 567
Hpy188III	TCNNGA	8 cut(s)	130, 182, 195, 237, 500, 584, 617, 710
Hpy8I	GTNNAC	5 cut(s)	62, 166, 488, 514, 637
HpyAV	CCTTC	2 cut(s)	161, 762
HpyCH4III	ACNGT	3 cut(s)	140, 188, 203
HpyCH4V	TGCA	5 cut(s)	81, 223, 308, 393, 631
HpyF10VI	GCNNNNNNNGC	3 cut(s)	220, 461, 725
HpyF3I	CTNAG	4 cut(s)	363, 417, 764, 869
Hsp92II	CATG	4 cut(s)	85, 425, 635, 925
HspAI	GCGC	1 cut(s)	425
Ksp22I	TGATCA	1 cut(s)	523
Kzo9I	GATC	1 cut(s)	523
LmnI	GCTCC	2 cut(s)	278, 463
Lsp1109I	GCAGC	2 cut(s)	377, 467
MabI	ACCWGGT	1 cut(s)	64
MaeI	CTAG	1 cut(s)	195
MaeIII	GTNAC	1 cut(s)	355
MalI	GATC	1 cut(s)	525
MboI	GATC	1 cut(s)	523
MboII	GAAGA	3 cut(s)	725, 755, 894
MhlI	GDGCHC	1 cut(s)	754
MluCI	AATT	6 cut(s)	54, 343, 503, 573, 609, 856
MmeI	TCCRAC	1 cut(s)	91
MnlI	CCTC	9 cut(s)	441, 507, 610, 709, 733, 792, 834, 918, 927
Mph1103I	ATGCAT	1 cut(s)	83
MroXI	GAANNNNTTC	2 cut(s)	118, 343
MseI	TTAA	2 cut(s)	624, 807
MslI	CAYNNNNRTG	2 cut(s)	303, 398
MspI	CCGG	1 cut(s)	287
MspR9I	CCNGG	2 cut(s)	66, 287
Mva1269I	GAATGC	1 cut(s)	118
MvaI	CCWGG	1 cut(s)	66
MwoI	GCNNNNNNNGC	3 cut(s)	220, 461, 725
NciI	CCSGG	1 cut(s)	287
NdeII	GATC	1 cut(s)	523
NlaIII	CATG	4 cut(s)	85, 425, 635, 925
NmuCI	GTSAC	1 cut(s)	355
NsiI	ATGCAT	1 cut(s)	83
NspI	RCATGY	3 cut(s)	85, 425, 635
PaeI	GCATGC	2 cut(s)	85, 425
PceI	AGGCCT	1 cut(s)	599
PctI	GAATGC	1 cut(s)	118
PdmI	GAANNNNTTC	2 cut(s)	118, 343
PfeI	GAWTC	3 cut(s)	537, 568, 885
PkrI	GCNGC	4 cut(s)	87, 392, 457, 727
PshAI	GACNNNNGTC	1 cut(s)	796
Psp124BI	GAGCTC	1 cut(s)	754
Psp6I	CCWGG	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	64
PspPI	GGNCC	4 cut(s)	43, 50, 148, 637
RsaI	GTAC	4 cut(s)	177, 205, 487, 698
RsaNI	GTAC	4 cut(s)	176, 204, 486, 697
RseI	CAYNNNNRTG	2 cut(s)	303, 398
SacI	GAGCTC	1 cut(s)	754
SaqAI	TTAA	2 cut(s)	624, 807
SatI	GCNGC	4 cut(s)	86, 391, 456, 726
Sau3AI	GATC	1 cut(s)	523
Sau96I	GGNCC	4 cut(s)	43, 50, 148, 637
ScaI	AGTACT	1 cut(s)	177
ScrFI	CCNGG	2 cut(s)	66, 287
SduI	GDGCHC	1 cut(s)	754
SexAI	ACCWGGT	1 cut(s)	64
SinI	GGWCC	2 cut(s)	148, 637
SmiMI	CAYNNNNRTG	2 cut(s)	303, 398
SphI	GCATGC	2 cut(s)	85, 425
Sse9I	AATT	6 cut(s)	54, 343, 503, 573, 609, 856
SseBI	AGGCCT	1 cut(s)	599
SsiI	CCGC	3 cut(s)	85, 719, 726
SspI	AATATT	1 cut(s)	560
SspMI	CTAG	1 cut(s)	195
SstI	GAGCTC	1 cut(s)	754
StuI	AGGCCT	1 cut(s)	599
StyD4I	CCNGG	2 cut(s)	64, 285
StyI	CCWWGG	1 cut(s)	46
TaaI	ACNGT	3 cut(s)	140, 188, 203
TaqI	TCGA	5 cut(s)	181, 651, 711, 833, 888
TasI	AATT	6 cut(s)	54, 343, 503, 573, 609, 856
TatI	WGTACW	4 cut(s)	175, 203, 485, 696
TauI	GCSGC	2 cut(s)	88, 728
TfiI	GAWTC	3 cut(s)	537, 568, 885
Tru1I	TTAA	2 cut(s)	624, 807
Tru9I	TTAA	2 cut(s)	624, 807
TscAI	CASTG	3 cut(s)	145, 526, 801
TseFI	GTSAC	1 cut(s)	355
TseI	GCWGC	2 cut(s)	390, 455
Tsp45I	GTSAC	1 cut(s)	355
TspRI	CASTG	3 cut(s)	145, 526, 801
VpaK11BI	GGWCC	2 cut(s)	148, 637
XapI	RAATTY	5 cut(s)	343, 503, 573, 609, 856
XbaI	TCTAGA	1 cut(s)	194
XceI	RCATGY	3 cut(s)	85, 425, 635
XmnI	GAANNNNTTC	2 cut(s)	118, 343
XspI	CTAG	1 cut(s)	195
ZrmI	AGTACT	1 cut(s)	177
Zsp2I	ATGCAT	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.