Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0027304

Physical Location & Seq

Genomic Coordinates Forward (+)

33077533 .. 33078455

Gene Structure 923 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49298

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGCGGGGACCCAATTCCAGTTCCAGAGAAAGTTCACCTCTAACACAAGTTCAAGAATTCATTTTGAATGTTAATATTTGGGCAGTGCACATAGCAGAATTTGATCACAAGGTTAAGGAGAAAGAGATAATGTATAAGAGATATAGTCATATAGAGGAGAGTGAAGCAGCAAGGATGTTAGAGGAAAAGAAAGCATTGAAACAACTGAGAAGGACGCTGGTACCCCATGCAAGGCCAATTTCTAATTTTGAGCATCCATTCTGCCCCCAGCTAGAAGCAATGAAATTGCAAGAAGCAAAAAAAGCAAAGTCACCAAATCTACGAGTTCTACAGCGGCAAGAAAGGCGAAGGATGACGGTCAAATCAGCCACTTCAATGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0007346 GO:0008017 GO:0008092 GO:0008150 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010564 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022607 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032886 GO:0033043 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0050789 GO:0050794 GO:0051128 GO:0051225 GO:0051493 GO:0051726 GO:0060236 GO:0065007 GO:0070013 GO:0070507 GO:0070925 GO:0071840 GO:0090224 GO:0090307 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140014 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2 TPX2_importin

Protein Analysis

127

Amino Acids

14.97

Weight (kDa)

10.11

Isoelectric Point (pI)

84.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPX2	PF06886	32 - 95	1.4e-12	Targeting protein for Xklp2 (TPX2) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0027304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44270
rosa_chinensis	RchiOBHm_Chr2g0120361

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	220
AccB1I	GGYRCC	1 cut(s)	220
AciI	CCGC	2 cut(s)	4, 334
AcsI	RAATTY	2 cut(s)	56, 98
AfaI	GTAC	1 cut(s)	222
AfiI	CCNNNNNNNGG	1 cut(s)	231
AgsI	TTSAA	4 cut(s)	53, 67, 199, 375
AluBI	AGCT	1 cut(s)	271
AluI	AGCT	1 cut(s)	271
Alw21I	GWGCWC	1 cut(s)	90
Alw44I	GTGCAC	1 cut(s)	86
AoxI	GGCC	1 cut(s)	233
ApaLI	GTGCAC	1 cut(s)	86
ApeKI	GCWGC	1 cut(s)	167
ApoI	RAATTY	2 cut(s)	56, 98
Asp718I	GGTACC	1 cut(s)	220
AspS9I	GGNCC	1 cut(s)	8
AsuHPI	GGTGA	2 cut(s)	27, 303
AvaII	GGWCC	1 cut(s)	8
BaeGI	GKGCMC	1 cut(s)	90
BaeI	ACNNNNGTAYC	2 cut(s)	204, 237
BanI	GGYRCC	1 cut(s)	220
Bbv12I	GWGCWC	1 cut(s)	90
BbvI	GCAGC	1 cut(s)	179
BclI	TGATCA	1 cut(s)	103
BfaI	CTAG	1 cut(s)	272
BfmI	CTRYAG	1 cut(s)	329
BisI	GCNGC	2 cut(s)	168, 335
BlsI	GCNGC	2 cut(s)	169, 336
Bme18I	GGWCC	1 cut(s)	8
BmgT120I	GGNCC	1 cut(s)	8
BmiI	GGNNCC	3 cut(s)	9, 10, 222
BmsI	GCATC	1 cut(s)	262
Bsc4I	CCNNNNNNNGG	1 cut(s)	231
Bse1I	ACTGG	1 cut(s)	18
Bse3DI	GCAATG	1 cut(s)	285
BseGI	GGATG	3 cut(s)	180, 253, 357
BseLI	CCNNNNNNNGG	1 cut(s)	231
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	1 cut(s)	197
BseNI	ACTGG	1 cut(s)	18
BseRI	GAGGAG	1 cut(s)	170
BseSI	GKGCMC	1 cut(s)	90
BseXI	GCAGC	1 cut(s)	179
BseYI	CCCAGC	1 cut(s)	267
BshFI	GGCC	1 cut(s)	235
BshNI	GGYRCC	1 cut(s)	220
BsiHKAI	GWGCWC	1 cut(s)	90
BslFI	GGGAC	1 cut(s)	21
BslI	CCNNNNNNNGG	1 cut(s)	231
BsmFI	GGGAC	1 cut(s)	21
BsnI	GGCC	1 cut(s)	235
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp143I	GATC	1 cut(s)	103
BspACI	CCGC	2 cut(s)	4, 334
BspANI	GGCC	1 cut(s)	235
BspCNI	CTCAG	1 cut(s)	198
BspLI	GGNNCC	3 cut(s)	9, 10, 222
BspT107I	GGYRCC	1 cut(s)	220
BsrDI	GCAATG	1 cut(s)	285
BsrI	ACTGG	1 cut(s)	18
BssMI	GATC	1 cut(s)	103
Bst4CI	ACNGT	1 cut(s)	358
BstDEI	CTNAG	1 cut(s)	206
BstF5I	GGATG	3 cut(s)	180, 253, 357
BstKTI	GATC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	103
BstMWI	GCNNNNNNNGC	2 cut(s)	302, 343
BstSFI	CTRYAG	1 cut(s)	329
BstSLI	GKGCMC	1 cut(s)	90
BstV1I	GCAGC	1 cut(s)	179
BsuRI	GGCC	1 cut(s)	235
BtsCI	GGATG	3 cut(s)	180, 253, 357
BtsI	GCAGTG	1 cut(s)	90
BtsIMutI	CAGTG	1 cut(s)	90
Cfr13I	GGNCC	1 cut(s)	8
CseI	GACGC	1 cut(s)	223
Csp6I	GTAC	1 cut(s)	221
CviAII	CATG	1 cut(s)	227
CviJI	RGCY	3 cut(s)	235, 271, 368
CviKI_1	RGCY	3 cut(s)	235, 271, 368
CviQI	GTAC	1 cut(s)	221
DdeI	CTNAG	1 cut(s)	206
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	8
EcoO109I	RGGNCCY	1 cut(s)	8
EcoRI	GAATTC	1 cut(s)	56
FaeI	CATG	1 cut(s)	230
FaiI	YATR	6 cut(s)	92, 135, 144, 150, 152, 228
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	1 cut(s)	226
FbaI	TGATCA	1 cut(s)	103
Fnu4HI	GCNGC	2 cut(s)	168, 335
FokI	GGATG	3 cut(s)	187, 240, 364
Fsp4HI	GCNGC	2 cut(s)	168, 335
FspBI	CTAG	1 cut(s)	272
GluI	GCNGC	2 cut(s)	168, 335
GsaI	CCCAGC	1 cut(s)	271
HaeIII	GGCC	1 cut(s)	235
HgaI	GACGC	1 cut(s)	223
Hin1II	CATG	1 cut(s)	230
HphI	GGTGA	2 cut(s)	27, 303
Hpy166II	GTNNAC	2 cut(s)	35, 88
Hpy188III	TCNNGA	2 cut(s)	24, 53
Hpy8I	GTNNAC	2 cut(s)	35, 88
HpyAV	CCTTC	2 cut(s)	204, 342
HpyCH4III	ACNGT	1 cut(s)	358
HpyCH4V	TGCA	3 cut(s)	88, 230, 289
HpyF10VI	GCNNNNNNNGC	2 cut(s)	302, 343
HpyF3I	CTNAG	1 cut(s)	206
Hsp92II	CATG	1 cut(s)	230
KflI	GGGWCCC	1 cut(s)	8
KpnI	GGTACC	1 cut(s)	224
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	1 cut(s)	103
LpnPI	CCDG	4 cut(s)	31, 37, 203, 281
Lsp1109I	GCAGC	1 cut(s)	179
LweI	GCATC	1 cut(s)	262
MaeI	CTAG	1 cut(s)	272
MaeIII	GTNAC	1 cut(s)	309
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MhlI	GDGCHC	1 cut(s)	90
MluCI	AATT	6 cut(s)	13, 56, 98, 237, 244, 284
MnlI	CCTC	3 cut(s)	48, 148, 175
MseI	TTAA	2 cut(s)	72, 114
MslI	CAYNNNNRTG	1 cut(s)	374
MspA1I	CMGCKG	1 cut(s)	334
MwoI	GCNNNNNNNGC	2 cut(s)	302, 343
NdeII	GATC	1 cut(s)	103
NlaIII	CATG	1 cut(s)	230
NlaIV	GGNNCC	3 cut(s)	9, 10, 222
NmuCI	GTSAC	1 cut(s)	309
PkrI	GCNGC	2 cut(s)	169, 336
PpuMI	RGGWCCY	1 cut(s)	8
Psp5II	RGGWCCY	1 cut(s)	8
PspFI	CCCAGC	1 cut(s)	267
PspN4I	GGNNCC	3 cut(s)	9, 10, 222
PspPI	GGNCC	1 cut(s)	8
PspPPI	RGGWCCY	1 cut(s)	8
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
RseI	CAYNNNNRTG	1 cut(s)	374
SaqAI	TTAA	2 cut(s)	72, 114
SatI	GCNGC	2 cut(s)	168, 335
Sau3AI	GATC	1 cut(s)	103
Sau96I	GGNCC	1 cut(s)	8
SduI	GDGCHC	1 cut(s)	90
SetI	ASST	3 cut(s)	40, 114, 273
SfaNI	GCATC	1 cut(s)	262
SfcI	CTRYAG	1 cut(s)	329
SinI	GGWCC	1 cut(s)	8
SmiMI	CAYNNNNRTG	1 cut(s)	374
Sse9I	AATT	6 cut(s)	13, 56, 98, 237, 244, 284
SsiI	CCGC	2 cut(s)	4, 334
SspI	AATATT	1 cut(s)	76
SspMI	CTAG	1 cut(s)	272
TaaI	ACNGT	1 cut(s)	358
TasI	AATT	6 cut(s)	13, 56, 98, 237, 244, 284
TauI	GCSGC	1 cut(s)	337
Tru1I	TTAA	2 cut(s)	72, 114
Tru9I	TTAA	2 cut(s)	72, 114
TscAI	CASTG	1 cut(s)	90
TseFI	GTSAC	1 cut(s)	309
TseI	GCWGC	1 cut(s)	167
Tsp45I	GTSAC	1 cut(s)	309
TspDTI	ATGAA	2 cut(s)	49, 296
TspRI	CASTG	1 cut(s)	90
VneI	GTGCAC	1 cut(s)	86
VpaK11BI	GGWCC	1 cut(s)	8
XapI	RAATTY	2 cut(s)	56, 98
XspI	CTAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.