AT5G47720

Belongs to the thiolase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
19331547 .. 19334427
2881 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G47720.5

Sequence Viewer

Length: 1218 bp
ATGGCTCCGCCTGTCTCTGATGATTCCCTACAGCCTCGAGATGTTTGTGTTGTGGGAGTGGCGCGAACGCCTATAGGGGACTTCCTTGGCTCCCTCTCGTCTTTGACTGCTACAAGACTTGGGTCCATAGCCATCCAAGCCGCACTTAAGAGAGCACATGTTGATCCGGCCCTTGTGGAAGAGGTCTTCTTTGGCAATGTCTTAACTGCCAATCTTGGGCAAGCACCAGCAAGACAGGCTGCACTTGGTGCTGGGATTCCCTATTCTGTGATCTGCACCACTATCAACAAAGTTTGTGCTGCAGGAATGAAATCTGTAATGCTAGCGTCTCAAAGTATCCAGCTCGGCTTGAATGATATTGTTGTTGCTGGTGGGATGGAGAGCATGTCAAACGTACCTAAGTACCTCCCGGACGCAAGAAGGGGTTCTCGATTAGGTCATGATACTGTTGTTGATGGTATGATGAAAGATGGACTTTGGGATGTCTATAATGACTTTGGAATGGGAGTTTGTGGAGAAATATGCGCTGACCAGTACCGTATTACAAGAGAAGAACAGGATGCTTATGCTATCCAGAGCTTTGAGCGTGGTATTGCTGCGCAAAACACTCAGTTGTTCGCTTGGGAAATTGTTCCGGTCGAAGTTTCCACTGGAAGAGGGAGGCCTTCAGTTGTTATTGACAAGGATGAAGGATTGGGGAAGTTTGATGCAGCCAAGTTAAAAAAGCTTAGACCAAGTTTCAAGGAGGATGGGGGATCAGTCACTGCTGGAAATGCATCAAGCATAAGTGATGGTGCGGCAGCGTTAGTGCTAGTGAGTGGAGAGAAGGCTCTTGAGCTTGGACTGCATGTTATCGCTAAGATTAGAGGATACGCTGATGCTGCTCAGGCACCAGAGTTATTCACAACCACGCCAGCTCTTGCTATTCCTAAAGCTATAAAGCGGGCTGGTTTGGATGCATCTCAAGTGGATTATTATGAAATAAACGAAGCATTTTCTGTGGTAGCTCTAGCCAATCAGAAACTACTGGGATTAGATCCTGAACGGCTCAATGCGCATGGAGGGGCTGTTTCACTGGGACATCCATTGGGCTGTAGCGGTGCTCGTATCTTGGTCACATTATTGGGGGTGTTGAGAGCAAAGAAGGGAAAGTATGGAGTGGCATCAATATGCAACGGAGGAGGAGGAGCATCAGCACTTGTCCTTGAGTTCATGTAA

Protein Analysis

405

Amino Acids

42.24

Weight (kDa)

6.02

Isoelectric Point (pI)

28.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 22 - 281 1.3e-90 Thiolase, N-terminal domain
Thiolase_C PF02803 290 - 410 8.7e-45 Thiolase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0020853)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47720 AT5G47720 AT5G47720 AT5G47720
rosa_samantha Rh5BG004600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 600, 1056
AccB1I GGYRCC 1 cut(s) 889
AccII CGCG 1 cut(s) 64
AciI CCGC 5 cut(s) 8, 141, 797, 943, 1098
AclWI GGATC 3 cut(s) 158, 763, 1031
AcuI CTGAAG 1 cut(s) 651
AdeI CACNNNGTG 1 cut(s) 248
AfaI GTAC 3 cut(s) 396, 404, 536
AfiI CCNNNNNNNGG 1 cut(s) 216
AflII CTTAAG 1 cut(s) 146
AflIII ACRYGT 1 cut(s) 157
AgsI TTSAA 2 cut(s) 352, 742
AluBI AGCT 7 cut(s) 343, 579, 727, 838, 917, 935, 1007
AluI AGCT 7 cut(s) 343, 579, 727, 838, 917, 935, 1007
Alw21I GWGCWC 2 cut(s) 157, 1105
Alw26I GTCTC 2 cut(s) 19, 333
AlwI GGATC 3 cut(s) 158, 763, 1031
AlwNI CAGNNNCTG 1 cut(s) 764
Ama87I CYCGRG 1 cut(s) 36
AoxI GGCC 2 cut(s) 168, 662
ApeKI GCWGC 6 cut(s) 239, 299, 596, 710, 800, 881
Asp700I GAANNNNTTC 2 cut(s) 424, 630
AspLEI GCGC 4 cut(s) 64, 527, 601, 1057
AspS9I GGNCC 2 cut(s) 123, 169
AsuC2I CCSGG 1 cut(s) 410
AsuNHI GCTAGC 1 cut(s) 322
AvaI CYCGRG 1 cut(s) 36
AvaII GGWCC 1 cut(s) 123
BaeI ACNNNNGTAYC 4 cut(s) 386, 419, 435, 468
BanI GGYRCC 1 cut(s) 889
BbsI GAAGAC 1 cut(s) 178
Bbv12I GWGCWC 2 cut(s) 157, 1105
BbvI GCAGC 6 cut(s) 226, 286, 583, 722, 812, 868
BccI CCATC 6 cut(s) 140, 370, 449, 464, 743, 785
BceAI ACGGC 1 cut(s) 1061
BciVI GTATCC 2 cut(s) 347, 863
BcnI CCSGG 1 cut(s) 410
BcoDI GTCTC 2 cut(s) 19, 333
BfaI CTAG 3 cut(s) 323, 812, 1010
BfmI CTRYAG 4 cut(s) 29, 72, 300, 1093
BfrI CTTAAG 1 cut(s) 146
BfuI GTATCC 2 cut(s) 347, 863
BisI GCNGC 8 cut(s) 141, 240, 300, 597, 711, 798, 801, 882
BlsI GCNGC 8 cut(s) 142, 241, 301, 598, 712, 799, 802, 883
Bme1390I CCNGG 1 cut(s) 410
Bme18I GGWCC 1 cut(s) 123
BmeT110I CYCGRG 1 cut(s) 36
BmgT120I GGNCC 2 cut(s) 123, 169
BmiI GGNNCC 4 cut(s) 6, 91, 124, 891
BmrFI CCNGG 1 cut(s) 410
BmrI ACTGGG 2 cut(s) 1037, 1085
BmsI GCATC 8 cut(s) 550, 697, 785, 868, 946, 968, 1172, 1199
BmtI GCTAGC 1 cut(s) 326
BmuI ACTGGG 2 cut(s) 1037, 1085
BoxI GACNNNNGTC 1 cut(s) 121
BpiI GAAGAC 1 cut(s) 178
Bpu10I CCTNAGC 1 cut(s) 885
BpuEI CTTGAG 2 cut(s) 854, 948
BpuMI CCSGG 1 cut(s) 410
BsaJI CCNNGG 1 cut(s) 85
BsaWI WCCGGW 1 cut(s) 634
BsaXI ACNNNNNCTCC 4 cut(s) 371, 401, 1053, 1083
Bsc4I CCNNNNNNNGG 1 cut(s) 216
Bse1I ACTGG 4 cut(s) 532, 655, 1032, 1080
Bse3DI GCAATG 1 cut(s) 202
BseDI CCNNGG 1 cut(s) 85
BseGI GGATG 8 cut(s) 132, 381, 487, 565, 691, 754, 961, 1081
BseLI CCNNNNNNNGG 1 cut(s) 216
BseMI GCAATG 1 cut(s) 202
BseMII CTCAG 2 cut(s) 623, 899
BseNI ACTGG 4 cut(s) 532, 655, 1032, 1080
BseRI GAGGAG 3 cut(s) 1194, 1197, 1200
BseXI GCAGC 6 cut(s) 226, 286, 583, 722, 812, 868
BseYI CCCAGC 1 cut(s) 251
BsgI GTGCAG 2 cut(s) 225, 259
Bsh1236I CGCG 1 cut(s) 64
Bsh1285I CGRYCG 1 cut(s) 639
BshFI GGCC 2 cut(s) 170, 664
BshNI GGYRCC 1 cut(s) 889
BsiEI CGRYCG 1 cut(s) 639
BsiHKAI GWGCWC 2 cut(s) 157, 1105
BsiHKCI CYCGRG 1 cut(s) 36
BsiSI CCGG 3 cut(s) 167, 410, 635
BslFI GGGAC 2 cut(s) 92, 1092
BslI CCNNNNNNNGG 1 cut(s) 216
BsmAI GTCTC 2 cut(s) 19, 333
BsmBI CGTCTC 1 cut(s) 333
BsmFI GGGAC 2 cut(s) 92, 1092
BsnI GGCC 2 cut(s) 170, 664
BsoBI CYCGRG 1 cut(s) 36
Bsp1286I GDGCHC 2 cut(s) 157, 1105
Bsp143I GATC 4 cut(s) 163, 270, 755, 1036
BspACI CCGC 5 cut(s) 8, 141, 797, 943, 1098
BspANI GGCC 2 cut(s) 170, 664
BspCNI CTCAG 2 cut(s) 622, 898
BspFNI CGCG 1 cut(s) 64
BspHI TCATGA 1 cut(s) 439
BspLI GGNNCC 4 cut(s) 6, 91, 124, 891
BspMAI CTGCAG 1 cut(s) 304
BspOI GCTAGC 1 cut(s) 326
BspPI GGATC 3 cut(s) 158, 763, 1031
BspT107I GGYRCC 1 cut(s) 889
BspTI CTTAAG 1 cut(s) 146
BsrDI GCAATG 1 cut(s) 202
BsrI ACTGG 4 cut(s) 532, 655, 1032, 1080
BssECI CCNNGG 1 cut(s) 85
BssMI GATC 4 cut(s) 163, 270, 755, 1036
BssT1I CCWWGG 1 cut(s) 85
Bst4CI ACNGT 2 cut(s) 448, 539
Bst6I CTCTTC 2 cut(s) 174, 649
BstAFI CTTAAG 1 cut(s) 146
BstAPI GCANNNNNTGC 1 cut(s) 248
BstC8I GCNNGC 4 cut(s) 222, 324, 915, 945
BstDEI CTNAG 5 cut(s) 399, 609, 728, 858, 885
BstF5I GGATG 8 cut(s) 132, 381, 487, 565, 691, 754, 961, 1081
BstFNI CGCG 1 cut(s) 64
BstHHI GCGC 4 cut(s) 64, 527, 601, 1057
BstKTI GATC 4 cut(s) 166, 273, 758, 1039
BstMAI GTCTC 2 cut(s) 19, 333
BstMBI GATC 4 cut(s) 163, 270, 755, 1036
BstMCI CGRYCG 1 cut(s) 639
BstMWI GCNNNNNNNGC 8 cut(s) 137, 236, 248, 773, 844, 881, 887, 1054
BstNSI RCATGY 3 cut(s) 161, 388, 851
BstPAI GACNNNNGTC 1 cut(s) 121
BstSCI CCNGG 1 cut(s) 408
BstSFI CTRYAG 4 cut(s) 29, 72, 300, 1093
BstUI CGCG 1 cut(s) 64
BstV1I GCAGC 6 cut(s) 226, 286, 583, 722, 812, 868
BstV2I GAAGAC 1 cut(s) 178
BstX2I RGATCY 1 cut(s) 1036
BstYI RGATCY 1 cut(s) 1036
BsuI GTATCC 2 cut(s) 347, 863
BsuRI GGCC 2 cut(s) 170, 664
BtsCI GGATG 8 cut(s) 132, 381, 487, 565, 691, 754, 961, 1081
BtsI GCAGTG 1 cut(s) 762
BtsIMutI CAGTG 3 cut(s) 648, 762, 1073
Cac8I GCNNGC 4 cut(s) 222, 324, 915, 945
CaiI CAGNNNCTG 1 cut(s) 764
CciI TCATGA 1 cut(s) 439
CfoI GCGC 4 cut(s) 64, 527, 601, 1057
Cfr13I GGNCC 2 cut(s) 123, 169
CseI GACGC 2 cut(s) 315, 422
Csp6I GTAC 3 cut(s) 395, 403, 535
CviAII CATG 6 cut(s) 158, 385, 440, 848, 1058, 1213
CviQI GTAC 3 cut(s) 395, 403, 535
DdeI CTNAG 5 cut(s) 399, 609, 728, 858, 885
DpnI GATC 4 cut(s) 165, 272, 757, 1038
DpnII GATC 4 cut(s) 163, 270, 755, 1036
DraIII CACNNNGTG 1 cut(s) 248
Eam1104I CTCTTC 2 cut(s) 174, 649
EarI CTCTTC 2 cut(s) 174, 649
Eco130I CCWWGG 1 cut(s) 85
Eco147I AGGCCT 1 cut(s) 664
Eco47I GGWCC 1 cut(s) 123
Eco57I CTGAAG 1 cut(s) 651
Eco88I CYCGRG 1 cut(s) 36
EcoT14I CCWWGG 1 cut(s) 85
EcoT22I ATGCAT 2 cut(s) 778, 961
ErhI CCWWGG 1 cut(s) 85
Esp3I CGTCTC 1 cut(s) 333
FaeI CATG 6 cut(s) 161, 388, 443, 851, 1061, 1216
FalI AAGNNNNNCTT 4 cut(s) 129, 161, 459, 491
FaqI GGGAC 2 cut(s) 92, 1092
FatI CATG 6 cut(s) 157, 384, 439, 847, 1057, 1212
FauI CCCGC 1 cut(s) 936
Fnu4HI GCNGC 8 cut(s) 141, 240, 300, 597, 711, 798, 801, 882
FokI GGATG 8 cut(s) 119, 388, 494, 572, 698, 761, 968, 1068
Fsp4HI GCNGC 8 cut(s) 141, 240, 300, 597, 711, 798, 801, 882
FspAI RTGCGCAY 1 cut(s) 1056
FspBI CTAG 3 cut(s) 323, 812, 1010
FspI TGCGCA 2 cut(s) 600, 1056
GlaI GCGC 4 cut(s) 63, 526, 600, 1056
GluI GCNGC 8 cut(s) 141, 240, 300, 597, 711, 798, 801, 882
GsaI CCCAGC 1 cut(s) 255
HaeIII GGCC 2 cut(s) 170, 664
HapII CCGG 3 cut(s) 167, 410, 635
HgaI GACGC 2 cut(s) 315, 422
HhaI GCGC 4 cut(s) 64, 527, 601, 1057
Hin1II CATG 6 cut(s) 161, 388, 443, 851, 1061, 1216
Hin6I GCGC 4 cut(s) 62, 525, 599, 1055
HinP1I GCGC 4 cut(s) 62, 525, 599, 1055
HindIII AAGCTT 1 cut(s) 725
HinfI GANTC 2 cut(s) 23, 256
HpaII CCGG 3 cut(s) 167, 410, 635
Hpy188I TCNGA 2 cut(s) 19, 1020
Hpy188III TCNNGA 6 cut(s) 38, 429, 440, 574, 833, 1040
HpyAV CCTTC 5 cut(s) 414, 675, 683, 820, 1138
HpyCH4III ACNGT 2 cut(s) 448, 539
HpyCH4IV ACGT 1 cut(s) 393
HpyCH4V TGCA 8 cut(s) 242, 276, 302, 710, 776, 847, 959, 1173
HpyF10VI GCNNNNNNNGC 8 cut(s) 137, 236, 248, 773, 844, 881, 887, 1054
HpyF3I CTNAG 5 cut(s) 399, 609, 728, 858, 885
HpySE526I ACGT 1 cut(s) 393
Hsp92II CATG 6 cut(s) 161, 388, 443, 851, 1061, 1216
HspAI GCGC 4 cut(s) 62, 525, 599, 1055
Kzo9I GATC 4 cut(s) 163, 270, 755, 1036
LmnI GCTCC 3 cut(s) 10, 95, 1187
Lsp1109I GCAGC 6 cut(s) 226, 286, 583, 722, 812, 868
LweI GCATC 8 cut(s) 550, 697, 785, 868, 946, 968, 1172, 1199
MaeI CTAG 3 cut(s) 323, 812, 1010
MaeII ACGT 1 cut(s) 393
MaeIII GTNAC 2 cut(s) 760, 1114
MalI GATC 4 cut(s) 165, 272, 757, 1038
MboI GATC 4 cut(s) 163, 270, 755, 1036
MboII GAAGA 4 cut(s) 178, 191, 563, 666
MflI RGATCY 1 cut(s) 1036
MhlI GDGCHC 2 cut(s) 157, 1105
MluCI AATT 1 cut(s) 627
Mph1103I ATGCAT 2 cut(s) 778, 961
MroXI GAANNNNTTC 2 cut(s) 424, 630
MseI TTAA 3 cut(s) 147, 203, 719
MslI CAYNNNNRTG 1 cut(s) 1168
MspCI CTTAAG 1 cut(s) 146
MspI CCGG 3 cut(s) 167, 410, 635
MspR9I CCNGG 1 cut(s) 410
MvnI CGCG 1 cut(s) 64
MwoI GCNNNNNNNGC 8 cut(s) 137, 236, 248, 773, 844, 881, 887, 1054
NciI CCSGG 1 cut(s) 410
NdeII GATC 4 cut(s) 163, 270, 755, 1036
NheI GCTAGC 1 cut(s) 322
NlaIII CATG 6 cut(s) 161, 388, 443, 851, 1061, 1216
NlaIV GGNNCC 4 cut(s) 6, 91, 124, 891
NmeAIII GCCGAG 1 cut(s) 324
NmuCI GTSAC 2 cut(s) 760, 1114
NsbI TGCGCA 2 cut(s) 600, 1056
NsiI ATGCAT 2 cut(s) 778, 961
NspI RCATGY 3 cut(s) 161, 388, 851
PaeR7I CTCGAG 1 cut(s) 36
PagI TCATGA 1 cut(s) 439
PceI AGGCCT 1 cut(s) 664
PciI ACATGT 1 cut(s) 157
PdmI GAANNNNTTC 2 cut(s) 424, 630
PfeI GAWTC 2 cut(s) 23, 256
PfoI TCCNGGA 1 cut(s) 408
PkrI GCNGC 8 cut(s) 142, 241, 301, 598, 712, 799, 802, 883
PscI ACATGT 1 cut(s) 157
PshAI GACNNNNGTC 1 cut(s) 121
PspFI CCCAGC 1 cut(s) 251
PspN4I GGNNCC 4 cut(s) 6, 91, 124, 891
PspPI GGNCC 2 cut(s) 123, 169
PstI CTGCAG 1 cut(s) 304
PstNI CAGNNNCTG 1 cut(s) 764
PsuI RGATCY 1 cut(s) 1036
RsaI GTAC 3 cut(s) 396, 404, 536
RsaNI GTAC 3 cut(s) 395, 403, 535
RseI CAYNNNNRTG 1 cut(s) 1168
SaqAI TTAA 3 cut(s) 147, 203, 719
SatI GCNGC 8 cut(s) 141, 240, 300, 597, 711, 798, 801, 882
Sau3AI GATC 4 cut(s) 163, 270, 755, 1036
Sau96I GGNCC 2 cut(s) 123, 169
ScrFI CCNGG 1 cut(s) 410
SduI GDGCHC 2 cut(s) 157, 1105
SfaNI GCATC 8 cut(s) 550, 697, 785, 868, 946, 968, 1172, 1199
SfcI CTRYAG 4 cut(s) 29, 72, 300, 1093
Sfr274I CTCGAG 1 cut(s) 36
SinI GGWCC 1 cut(s) 123
SlaI CTCGAG 1 cut(s) 36
SmiMI CAYNNNNRTG 1 cut(s) 1168
SmlI CTYRAG 5 cut(s) 36, 146, 833, 963, 1205
SmoI CTYRAG 5 cut(s) 36, 146, 833, 963, 1205
Sse9I AATT 1 cut(s) 627
SseBI AGGCCT 1 cut(s) 664
SsiI CCGC 5 cut(s) 8, 141, 797, 943, 1098
SspMI CTAG 3 cut(s) 323, 812, 1010
StuI AGGCCT 1 cut(s) 664
StyD4I CCNGG 1 cut(s) 408
StyI CCWWGG 1 cut(s) 85
TaaI ACNGT 2 cut(s) 448, 539
TaiI ACGT 1 cut(s) 396
TaqI TCGA 3 cut(s) 37, 430, 639
TasI AATT 1 cut(s) 627
TauI GCSGC 2 cut(s) 143, 800
TfiI GAWTC 2 cut(s) 23, 256
Tru1I TTAA 3 cut(s) 147, 203, 719
Tru9I TTAA 3 cut(s) 147, 203, 719
TscAI CASTG 3 cut(s) 655, 769, 1080
TseFI GTSAC 2 cut(s) 760, 1114
TseI GCWGC 6 cut(s) 239, 299, 596, 710, 800, 881
Tsp45I GTSAC 2 cut(s) 760, 1114
TspDTI ATGAA 5 cut(s) 323, 479, 702, 993, 1201
TspGWI ACGGA 1 cut(s) 1191
TspRI CASTG 3 cut(s) 655, 769, 1080
Vha464I CTTAAG 1 cut(s) 146
VpaK11BI GGWCC 1 cut(s) 123
XceI RCATGY 3 cut(s) 161, 388, 851
XhoI CTCGAG 1 cut(s) 36
XmnI GAANNNNTTC 2 cut(s) 424, 630
XspI CTAG 3 cut(s) 323, 812, 1010
Zsp2I ATGCAT 2 cut(s) 778, 961
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.