Rh5BG004600

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
393126 .. 393512
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG004600.1

Sequence Viewer

Length: 387 bp
ATGTATTGTAACTTGAAGCAAAATGTGTATAGAACAGAAAGGCTCATCAACAATCAACCTCCCCCTAACAAAGACAAAGACAAACATGGAGACAATATTGCCCCAAACATGAACCCACTGATGCATGGCAGAAAAGCAACGGTGGAGGTCATTTATGTCTTTCCCCAATTGTGGCATTTACCGTTAGCCAACGCGTACTTCTCTGTGTTTCCCGCTAAAATAGGACGTACTGGAGGTAGATGTCAAAATCTTGGACCTCATATTTTGGGCAAAGCAAACCAATTCTACCAATCTTTTTCTTTTTCCTTTGGATCTTTGAGAAATTTTTTTAGATTTGTTAGCTTGAGAGAGAAAATTTTAACTTTGTGGGGGATTTGGGGTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.81

Weight (kDa)

10.08

Isoelectric Point (pI)

46.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020853)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47720 AT5G47720 AT5G47720 AT5G47720
rosa_samantha Rh5BG004600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 194
AciI CCGC 1 cut(s) 213
AclWI GGATC 1 cut(s) 319
AcsI RAATTY 2 cut(s) 322, 354
AfaI GTAC 2 cut(s) 197, 229
AfiI CCNNNNNNNGG 1 cut(s) 171
AflIII ACRYGT 1 cut(s) 192
AgsI TTSAA 1 cut(s) 16
AjuI GAANNNNNNNTTGG 2 cut(s) 182, 214
AluBI AGCT 1 cut(s) 342
AluI AGCT 1 cut(s) 342
Alw26I GTCTC 1 cut(s) 84
AlwI GGATC 1 cut(s) 319
ApoI RAATTY 2 cut(s) 322, 354
AspS9I GGNCC 1 cut(s) 254
AvaII GGWCC 1 cut(s) 254
BcoDI GTCTC 1 cut(s) 84
Bme18I GGWCC 1 cut(s) 254
BmgT120I GGNCC 1 cut(s) 254
BmsI GCATC 1 cut(s) 111
BpmI CTGGAG 1 cut(s) 252
BpuEI CTTGAG 1 cut(s) 364
Bsc4I CCNNNNNNNGG 1 cut(s) 171
Bse1I ACTGG 1 cut(s) 235
BseLI CCNNNNNNNGG 1 cut(s) 171
BseNI ACTGG 1 cut(s) 235
Bsh1236I CGCG 1 cut(s) 194
BslI CCNNNNNNNGG 1 cut(s) 171
BsmAI GTCTC 1 cut(s) 84
Bsp143I GATC 1 cut(s) 311
BspACI CCGC 1 cut(s) 213
BspFNI CGCG 1 cut(s) 194
BspPI GGATC 1 cut(s) 319
BsrI ACTGG 1 cut(s) 235
BssMI GATC 1 cut(s) 311
Bst4CI ACNGT 2 cut(s) 142, 183
BstFNI CGCG 1 cut(s) 194
BstKTI GATC 1 cut(s) 314
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 1 cut(s) 311
BstUI CGCG 1 cut(s) 194
BstX2I RGATCY 1 cut(s) 311
BstYI RGATCY 1 cut(s) 311
BtsIMutI CAGTG 1 cut(s) 116
Cfr13I GGNCC 1 cut(s) 254
Csp6I GTAC 2 cut(s) 196, 228
CviAII CATG 3 cut(s) 86, 109, 125
CviJI RGCY 3 cut(s) 43, 188, 342
CviKI_1 RGCY 3 cut(s) 43, 188, 342
CviQI GTAC 2 cut(s) 196, 228
DpnI GATC 1 cut(s) 313
DpnII GATC 1 cut(s) 311
Eco47I GGWCC 1 cut(s) 254
EcoT22I ATGCAT 1 cut(s) 126
FaeI CATG 3 cut(s) 89, 112, 128
FaiI YATR 6 cut(s) 30, 87, 110, 126, 156, 261
FatI CATG 3 cut(s) 85, 108, 124
FauI CCCGC 1 cut(s) 220
GsuI CTGGAG 1 cut(s) 252
Hin1II CATG 3 cut(s) 89, 112, 128
HpyCH4III ACNGT 2 cut(s) 142, 183
HpyCH4IV ACGT 1 cut(s) 226
HpyCH4V TGCA 1 cut(s) 124
HpySE526I ACGT 1 cut(s) 226
Hsp92II CATG 3 cut(s) 89, 112, 128
Kzo9I GATC 1 cut(s) 311
LpnPI CCDG 1 cut(s) 216
LweI GCATC 1 cut(s) 111
MaeII ACGT 1 cut(s) 226
MaeIII GTNAC 1 cut(s) 8
MalI GATC 1 cut(s) 313
MboI GATC 1 cut(s) 311
MfeI CAATTG 1 cut(s) 167
MflI RGATCY 1 cut(s) 311
MluCI AATT 5 cut(s) 167, 281, 322, 354, 382
MluI ACGCGT 1 cut(s) 192
MnlI CCTC 4 cut(s) 69, 139, 227, 267
Mph1103I ATGCAT 1 cut(s) 126
MseI TTAA 2 cut(s) 359, 385
MunI CAATTG 1 cut(s) 167
MvnI CGCG 1 cut(s) 194
NdeII GATC 1 cut(s) 311
NlaIII CATG 3 cut(s) 89, 112, 128
NsiI ATGCAT 1 cut(s) 126
PspPI GGNCC 1 cut(s) 254
PsuI RGATCY 1 cut(s) 311
RsaI GTAC 2 cut(s) 197, 229
RsaNI GTAC 2 cut(s) 196, 228
SaqAI TTAA 2 cut(s) 359, 385
Sau3AI GATC 1 cut(s) 311
Sau96I GGNCC 1 cut(s) 254
SetI ASST 6 cut(s) 61, 150, 229, 238, 259, 344
SfaNI GCATC 1 cut(s) 111
SgeI CNNG 9 cut(s) 25, 98, 121, 137, 205, 224, 243, 263, 355
SinI GGWCC 1 cut(s) 254
SmlI CTYRAG 1 cut(s) 343
SmoI CTYRAG 1 cut(s) 343
Sse9I AATT 5 cut(s) 167, 281, 322, 354, 382
SsiI CCGC 1 cut(s) 213
SspI AATATT 1 cut(s) 97
TaaI ACNGT 2 cut(s) 142, 183
TaiI ACGT 1 cut(s) 229
TasI AATT 5 cut(s) 167, 281, 322, 354, 382
Tru1I TTAA 2 cut(s) 359, 385
Tru9I TTAA 2 cut(s) 359, 385
TscAI CASTG 1 cut(s) 123
TspDTI ATGAA 1 cut(s) 125
TspRI CASTG 1 cut(s) 123
VpaK11BI GGWCC 1 cut(s) 254
XapI RAATTY 2 cut(s) 322, 354
Zsp2I ATGCAT 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.