Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0023590

Physical Location & Seq

Genomic Coordinates Reverse (-)

24081868 .. 24083562

Gene Structure 1695 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G59780.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGACTCCACAAGAAGAGCGTTTAGTCCTTGAGCTTCACGCCAAATGGGGAAACAGGTGGTCAAAAATTGCCCGGAAATTACCGGGGAGAACAGATAATGAGATAAAGAACTACTGGAGGACTCATATGAGGAAGAAGGCTCAAGAGAAGAAGCGACCTATGTCTCCTACTTCCTCATCTTCAAACTGTTGCTCATCATCTATGACCACTACTACTAGTCAAGACACTGGAGGCTCCAACGGGAAAATGAATCAAGAATGCGAAGACGGGTACTACTCCATGGATGACATATGGAGAGAGATTGATCAGTCTGGAGCAAACGTTATTAAACCGGTAAAAGACAACTACTACTCAGAGCAAAGCTGTTACTTGAATTTCCCTCCTCTGGCTTCTCCAACATGGGAAAGTTCCTTGGAATCTATATGGAACATGGATGCAGATGAAAGTAAGATGTCTTCTTTTGCTATTGATCAGTTTCCTCTAAGTTTTGAACATGGTAGTGGTCGCCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

170

Amino Acids

19.48

Weight (kDa)

5.95

Isoelectric Point (pI)

60.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	10 - 57	6.9e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	13 - 72	1.8e-10	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	63 - 107	1.2e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	67 - 114	4.6e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0023590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59780 AT5G59780
rosa_samantha	Rh3BG185200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	321
AcsI	RAATTY	1 cut(s)	373
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	1 cut(s)	385
AgeI	ACCGGT	1 cut(s)	331
AgsI	TTSAA	3 cut(s)	183, 373, 491
AhlI	ACTAGT	1 cut(s)	215
AluBI	AGCT	2 cut(s)	34, 363
AluI	AGCT	2 cut(s)	34, 363
Alw26I	GTCTC	1 cut(s)	168
ApoI	RAATTY	1 cut(s)	373
AsiGI	ACCGGT	1 cut(s)	331
AsuC2I	CCSGG	2 cut(s)	73, 84
BarI	GAAGNNNNNNTAC	2 cut(s)	439, 471
BbsI	GAAGAC	2 cut(s)	270, 447
BclI	TGATCA	2 cut(s)	304, 469
BcnI	CCSGG	2 cut(s)	73, 84
BcoDI	GTCTC	1 cut(s)	168
BcuI	ACTAGT	1 cut(s)	215
BfaI	CTAG	1 cut(s)	216
Bme1390I	CCNGG	2 cut(s)	73, 84
BmiI	GGNNCC	1 cut(s)	235
BmrFI	CCNGG	2 cut(s)	73, 84
BmsI	GCATC	1 cut(s)	424
BoxI	GACNNNNGTC	1 cut(s)	160
BpiI	GAAGAC	2 cut(s)	270, 447
BpmI	CTGGAG	3 cut(s)	136, 249, 333
BpuEI	CTTGAG	2 cut(s)	50, 126
BpuMI	CCSGG	2 cut(s)	73, 84
BsaJI	CCNNGG	3 cut(s)	83, 279, 411
BsaWI	WCCGGW	1 cut(s)	331
BsaXI	ACNNNNNCTCC	2 cut(s)	306, 336
Bsc4I	CCNNNNNNNGG	1 cut(s)	385
Bse118I	RCCGGY	1 cut(s)	331
Bse1I	ACTGG	2 cut(s)	119, 232
BseDI	CCNNGG	3 cut(s)	83, 279, 411
BseGI	GGATG	2 cut(s)	289, 439
BseLI	CCNNNNNNNGG	1 cut(s)	385
BseMII	CTCAG	1 cut(s)	366
BseNI	ACTGG	2 cut(s)	119, 232
BseRI	GAGGAG	1 cut(s)	372
BshTI	ACCGGT	1 cut(s)	331
BsiSI	CCGG	3 cut(s)	73, 83, 332
BslI	CCNNNNNNNGG	1 cut(s)	385
BsmAI	GTCTC	1 cut(s)	168
BsmI	GAATGC	1 cut(s)	263
Bsp143I	GATC	2 cut(s)	304, 469
Bsp19I	CCATGG	1 cut(s)	279
BspCNI	CTCAG	1 cut(s)	365
BspLI	GGNNCC	1 cut(s)	235
BspQI	GCTCTTC	1 cut(s)	9
BsrFI	RCCGGY	1 cut(s)	331
BsrI	ACTGG	2 cut(s)	119, 232
BssAI	RCCGGY	1 cut(s)	331
BssECI	CCNNGG	3 cut(s)	83, 279, 411
BssMI	GATC	2 cut(s)	304, 469
BssT1I	CCWWGG	2 cut(s)	279, 411
Bst4CI	ACNGT	1 cut(s)	188
Bst6I	CTCTTC	1 cut(s)	9
BstDEI	CTNAG	2 cut(s)	352, 482
BstDSI	CCRYGG	1 cut(s)	279
BstF5I	GGATG	2 cut(s)	289, 439
BstKTI	GATC	2 cut(s)	307, 472
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	2 cut(s)	304, 469
BstPAI	GACNNNNGTC	1 cut(s)	160
BstSCI	CCNGG	2 cut(s)	71, 82
BstV2I	GAAGAC	2 cut(s)	270, 447
BtgI	CCRYGG	1 cut(s)	279
BtsCI	GGATG	2 cut(s)	289, 439
BtsIMutI	CAGTG	1 cut(s)	225
Cfr10I	RCCGGY	1 cut(s)	331
Csp6I	GTAC	1 cut(s)	271
CspAI	ACCGGT	1 cut(s)	331
CviAII	CATG	4 cut(s)	280, 399, 430, 494
CviJI	RGCY	5 cut(s)	34, 140, 234, 363, 389
CviKI_1	RGCY	5 cut(s)	34, 140, 234, 363, 389
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	2 cut(s)	352, 482
DpnI	GATC	2 cut(s)	306, 471
DpnII	GATC	2 cut(s)	304, 469
Eam1104I	CTCTTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	9
Eco130I	CCWWGG	2 cut(s)	279, 411
EcoT14I	CCWWGG	2 cut(s)	279, 411
ErhI	CCWWGG	2 cut(s)	279, 411
FaeI	CATG	4 cut(s)	283, 402, 433, 497
FatI	CATG	4 cut(s)	279, 398, 429, 493
FauNDI	CATATG	2 cut(s)	126, 290
FbaI	TGATCA	2 cut(s)	304, 469
FokI	GGATG	2 cut(s)	296, 446
FspBI	CTAG	1 cut(s)	216
GsuI	CTGGAG	3 cut(s)	136, 249, 333
HapII	CCGG	3 cut(s)	73, 83, 332
Hin1II	CATG	4 cut(s)	283, 402, 433, 497
HinfI	GANTC	4 cut(s)	4, 121, 250, 416
HpaII	CCGG	3 cut(s)	73, 83, 332
Hpy188I	TCNGA	1 cut(s)	355
Hpy188III	TCNNGA	4 cut(s)	143, 221, 254, 312
HpyAV	CCTTC	1 cut(s)	130
HpyCH4III	ACNGT	1 cut(s)	188
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	1 cut(s)	437
HpyF3I	CTNAG	2 cut(s)	352, 482
HpySE526I	ACGT	1 cut(s)	321
Hsp92II	CATG	4 cut(s)	283, 402, 433, 497
Ksp22I	TGATCA	2 cut(s)	304, 469
Kzo9I	GATC	2 cut(s)	304, 469
LguI	GCTCTTC	1 cut(s)	9
LmnI	GCTCC	2 cut(s)	239, 314
LpnPI	CCDG	8 cut(s)	40, 86, 96, 100, 213, 297, 345, 371
LweI	GCATC	1 cut(s)	424
MaeI	CTAG	1 cut(s)	216
MaeII	ACGT	1 cut(s)	321
MaeIII	GTNAC	1 cut(s)	365
MalI	GATC	2 cut(s)	306, 471
MboI	GATC	2 cut(s)	304, 469
MboII	GAAGA	6 cut(s)	26, 145, 160, 171, 275, 447
MluCI	AATT	3 cut(s)	66, 77, 373
MlyI	GAGTC	1 cut(s)	115
MmeI	TCCRAC	2 cut(s)	261, 419
MnlI	CCTC	7 cut(s)	111, 123, 184, 224, 390, 393, 489
MseI	TTAA	1 cut(s)	327
MslI	CAYNNNNRTG	1 cut(s)	498
MspI	CCGG	3 cut(s)	73, 83, 332
MspR9I	CCNGG	2 cut(s)	73, 84
Mva1269I	GAATGC	1 cut(s)	263
NciI	CCSGG	2 cut(s)	73, 84
NcoI	CCATGG	1 cut(s)	279
NdeI	CATATG	2 cut(s)	126, 290
NdeII	GATC	2 cut(s)	304, 469
NlaIII	CATG	4 cut(s)	283, 402, 433, 497
NlaIV	GGNNCC	1 cut(s)	235
PciSI	GCTCTTC	1 cut(s)	9
PctI	GAATGC	1 cut(s)	263
PfeI	GAWTC	2 cut(s)	250, 416
PinAI	ACCGGT	1 cut(s)	331
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
PshAI	GACNNNNGTC	1 cut(s)	160
Psp1406I	AACGTT	1 cut(s)	321
PspN4I	GGNNCC	1 cut(s)	235
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
RseI	CAYNNNNRTG	1 cut(s)	498
SapI	GCTCTTC	1 cut(s)	9
SaqAI	TTAA	1 cut(s)	327
Sau3AI	GATC	2 cut(s)	304, 469
SchI	GAGTC	1 cut(s)	115
ScrFI	CCNGG	2 cut(s)	73, 84
SetI	ASST	5 cut(s)	36, 59, 160, 324, 365
SfaNI	GCATC	1 cut(s)	424
SmiMI	CAYNNNNRTG	1 cut(s)	498
SmlI	CTYRAG	2 cut(s)	29, 141
SmoI	CTYRAG	2 cut(s)	29, 141
SpeI	ACTAGT	1 cut(s)	215
Sse9I	AATT	3 cut(s)	66, 77, 373
SspMI	CTAG	1 cut(s)	216
StyD4I	CCNGG	2 cut(s)	71, 82
StyI	CCWWGG	2 cut(s)	279, 411
TaaI	ACNGT	1 cut(s)	188
TaiI	ACGT	1 cut(s)	324
TasI	AATT	3 cut(s)	66, 77, 373
TfiI	GAWTC	2 cut(s)	250, 416
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TscAI	CASTG	1 cut(s)	232
TspDTI	ATGAA	2 cut(s)	263, 456
TspRI	CASTG	1 cut(s)	232
XapI	RAATTY	1 cut(s)	373
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.