Rh3BG185200
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0023590
Physical Location & Seq
Forward (+)
16364427 .. 16365448
1022 bp
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UTR
Exon/CDS
Intron
Rh3BG185200.1

Sequence Viewer

Length: 198 bp
ATGGCTTATGAAGCAGCAGCTGTGGAAGGTGAAAAACTGCGCAAAGGTCCATGGCTAGAAGAGGAAGATGAACGACTCACCATGTATGTAAGACTTAAGGGGGATCGGAGGTGGGATGCATTAGCCAAGGAATCAGTTTGTTCTTCCCAACTCACCAAGTGGAATTTTGGCACATATGGGGACAGAGTATGCTGGTGA

Protein Analysis

65

Amino Acids

7.63

Weight (kDa)

5.38

Isoelectric Point (pI)

50.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 15 - 43 6.5e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0023590)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59780 AT5G59780
rosa_samantha Rh3BG185200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 41
AclWI GGATC 1 cut(s) 111
AcsI RAATTY 1 cut(s) 163
AdeI CACNNNGTG 1 cut(s) 159
AflII CTTAAG 1 cut(s) 95
AluBI AGCT 1 cut(s) 20
AluI AGCT 1 cut(s) 20
AlwI GGATC 1 cut(s) 111
AlwNI CAGNNNCTG 1 cut(s) 20
ApeKI GCWGC 2 cut(s) 14, 17
ApoI RAATTY 1 cut(s) 163
AspLEI GCGC 1 cut(s) 42
AspS9I GGNCC 1 cut(s) 47
AsuHPI GGTGA 3 cut(s) 41, 70, 145
AvaII GGWCC 1 cut(s) 47
BbvI GCAGC 2 cut(s) 26, 29
BfaI CTAG 1 cut(s) 56
BfrI CTTAAG 1 cut(s) 95
BisI GCNGC 2 cut(s) 15, 18
BlsI GCNGC 2 cut(s) 16, 19
Bme18I GGWCC 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 47
BmsI GCATC 1 cut(s) 106
BsaJI CCNNGG 2 cut(s) 50, 126
BseDI CCNNGG 2 cut(s) 50, 126
BseGI GGATG 1 cut(s) 121
BseXI GCAGC 2 cut(s) 26, 29
BslFI GGGAC 1 cut(s) 194
BsmFI GGGAC 1 cut(s) 194
Bsp143I GATC 1 cut(s) 103
Bsp19I CCATGG 1 cut(s) 50
BspPI GGATC 1 cut(s) 111
BspTI CTTAAG 1 cut(s) 95
BssECI CCNNGG 2 cut(s) 50, 126
BssMI GATC 1 cut(s) 103
BssT1I CCWWGG 2 cut(s) 50, 126
Bst6I CTCTTC 1 cut(s) 54
BstAFI CTTAAG 1 cut(s) 95
BstDSI CCRYGG 1 cut(s) 50
BstF5I GGATG 1 cut(s) 121
BstHHI GCGC 1 cut(s) 42
BstKTI GATC 1 cut(s) 106
BstMBI GATC 1 cut(s) 103
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstV1I GCAGC 2 cut(s) 26, 29
BtgI CCRYGG 1 cut(s) 50
BtsCI GGATG 1 cut(s) 121
CaiI CAGNNNCTG 1 cut(s) 20
CfoI GCGC 1 cut(s) 42
Cfr13I GGNCC 1 cut(s) 47
CviAII CATG 2 cut(s) 51, 82
CviJI RGCY 4 cut(s) 5, 20, 55, 125
CviKI_1 RGCY 4 cut(s) 5, 20, 55, 125
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
DraIII CACNNNGTG 1 cut(s) 159
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco130I CCWWGG 2 cut(s) 50, 126
Eco47I GGWCC 1 cut(s) 47
EcoT14I CCWWGG 2 cut(s) 50, 126
EcoT22I ATGCAT 1 cut(s) 121
ErhI CCWWGG 2 cut(s) 50, 126
FaeI CATG 2 cut(s) 54, 85
FaiI YATR 7 cut(s) 9, 52, 83, 87, 175, 177, 190
FaqI GGGAC 1 cut(s) 194
FatI CATG 2 cut(s) 50, 81
FauNDI CATATG 1 cut(s) 175
Fnu4HI GCNGC 2 cut(s) 15, 18
FokI GGATG 1 cut(s) 128
Fsp4HI GCNGC 2 cut(s) 15, 18
FspBI CTAG 1 cut(s) 56
FspI TGCGCA 1 cut(s) 41
GlaI GCGC 1 cut(s) 41
GluI GCNGC 2 cut(s) 15, 18
HhaI GCGC 1 cut(s) 42
Hin1II CATG 2 cut(s) 54, 85
Hin6I GCGC 1 cut(s) 40
HinP1I GCGC 1 cut(s) 40
HinfI GANTC 2 cut(s) 75, 131
HphI GGTGA 3 cut(s) 41, 70, 145
Hpy188I TCNGA 1 cut(s) 108
HpyAV CCTTC 1 cut(s) 20
HpyCH4V TGCA 1 cut(s) 119
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
Hsp92II CATG 2 cut(s) 54, 85
HspAI GCGC 1 cut(s) 40
Kzo9I GATC 1 cut(s) 103
LpnPI CCDG 1 cut(s) 178
Lsp1109I GCAGC 2 cut(s) 26, 29
LweI GCATC 1 cut(s) 106
MaeI CTAG 1 cut(s) 56
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MboII GAAGA 3 cut(s) 71, 77, 135
MluCI AATT 1 cut(s) 163
MlyI GAGTC 1 cut(s) 69
MnlI CCTC 2 cut(s) 55, 102
Mph1103I ATGCAT 1 cut(s) 121
MseI TTAA 1 cut(s) 96
MspA1I CMGCKG 1 cut(s) 20
MspCI CTTAAG 1 cut(s) 95
MwoI GCNNNNNNNGC 1 cut(s) 11
NcoI CCATGG 1 cut(s) 50
NdeI CATATG 1 cut(s) 175
NdeII GATC 1 cut(s) 103
NlaIII CATG 2 cut(s) 54, 85
NsbI TGCGCA 1 cut(s) 41
NsiI ATGCAT 1 cut(s) 121
PfeI GAWTC 1 cut(s) 131
PkrI GCNGC 2 cut(s) 16, 19
PleI GAGTC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 69
PspPI GGNCC 1 cut(s) 47
PstNI CAGNNNCTG 1 cut(s) 20
PvuII CAGCTG 1 cut(s) 20
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 2 cut(s) 15, 18
Sau3AI GATC 1 cut(s) 103
Sau96I GGNCC 1 cut(s) 47
SchI GAGTC 1 cut(s) 69
SetI ASST 4 cut(s) 22, 31, 49, 113
SfaNI GCATC 1 cut(s) 106
SgeI CNNG 5 cut(s) 63, 68, 94, 139, 169
SinI GGWCC 1 cut(s) 47
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
Sse9I AATT 1 cut(s) 163
SspMI CTAG 1 cut(s) 56
StyI CCWWGG 2 cut(s) 50, 126
TasI AATT 1 cut(s) 163
TfiI GAWTC 1 cut(s) 131
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TseI GCWGC 2 cut(s) 14, 17
TspDTI ATGAA 2 cut(s) 24, 84
Vha464I CTTAAG 1 cut(s) 95
VpaK11BI GGWCC 1 cut(s) 47
XapI RAATTY 1 cut(s) 163
XspI CTAG 1 cut(s) 56
Zsp2I ATGCAT 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.