Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0027583

Physical Location & Seq

Genomic Coordinates Reverse (-)

36938 .. 37240

Gene Structure 303 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

ATCG00330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGCAAAGAAAAGTTTGATTTATAGGGAGAAGAAGAGGCAAAAATTGGAAAAAAAATATCATTTGATTCGTCGATCCTCAAAAAAGGAAATAAGTAAGATTCCGTCGCTAAGTGAGAAATGGAAAATTCATGGAAAATTACAATCCCCACCGCGTAATAGTGCACCTACACGTCTTCATCGACGTTGCTTTTCGACCGGAAGACCGAGAGCTAACTATCGAGACTTTGGACTATCTGGACACATCCTTCGGGAAATGGTTCAGGCATGTTTGTTGCCAGGGGCAACAAGATCAAGCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S14

Protein Analysis

100

Amino Acids

11.74

Weight (kDa)

11.23

Isoelectric Point (pI)

71.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S14	PF00253	46 - 99	3.4e-19	Ribosomal protein S14p/S29e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0027583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00330
rosa_chinensis	RchiOBHm_CPg0502271

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	154
AciI	CCGC	1 cut(s)	152
AclWI	GGATC	1 cut(s)	69
AcsI	RAATTY	1 cut(s)	126
AflIII	ACRYGT	1 cut(s)	170
AjiI	CACGTC	1 cut(s)	173
AjnI	CCWGG	1 cut(s)	277
AluBI	AGCT	2 cut(s)	212, 297
AluI	AGCT	2 cut(s)	212, 297
Alw21I	GWGCWC	1 cut(s)	166
Alw26I	GTCTC	1 cut(s)	216
Alw44I	GTGCAC	1 cut(s)	162
AlwI	GGATC	1 cut(s)	69
ApaLI	GTGCAC	1 cut(s)	162
ApoI	RAATTY	1 cut(s)	126
ArsI	GACNNNNNNTTYG	2 cut(s)	231, 263
Asp700I	GAANNNNTTC	1 cut(s)	258
BaeGI	GKGCMC	1 cut(s)	166
BbsI	GAAGAC	2 cut(s)	167, 208
Bbv12I	GWGCWC	1 cut(s)	166
BciT130I	CCWGG	1 cut(s)	279
BcoDI	GTCTC	1 cut(s)	216
Bme1390I	CCNGG	1 cut(s)	279
BmgBI	CACGTC	1 cut(s)	173
BmrFI	CCNGG	1 cut(s)	279
BpiI	GAAGAC	2 cut(s)	167, 208
BsaJI	CCNNGG	1 cut(s)	278
BsaWI	WCCGGW	1 cut(s)	197
BseBI	CCWGG	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	278
BseGI	GGATG	1 cut(s)	243
BseSI	GKGCMC	1 cut(s)	166
Bsh1236I	CGCG	1 cut(s)	154
Bsh1285I	CGRYCG	1 cut(s)	198
BsiEI	CGRYCG	1 cut(s)	198
BsiHKAI	GWGCWC	1 cut(s)	166
BsiSI	CCGG	1 cut(s)	198
BsmAI	GTCTC	1 cut(s)	216
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp143I	GATC	2 cut(s)	74, 290
BspACI	CCGC	1 cut(s)	152
BspFNI	CGCG	1 cut(s)	154
BspPI	GGATC	1 cut(s)	69
BssECI	CCNNGG	1 cut(s)	278
BssMI	GATC	2 cut(s)	74, 290
Bst2UI	CCWGG	1 cut(s)	279
Bst6I	CTCTTC	1 cut(s)	29
BstDEI	CTNAG	1 cut(s)	110
BstF5I	GGATG	1 cut(s)	243
BstFNI	CGCG	1 cut(s)	154
BstKTI	GATC	2 cut(s)	77, 293
BstMAI	GTCTC	1 cut(s)	216
BstMBI	GATC	2 cut(s)	74, 290
BstMCI	CGRYCG	1 cut(s)	198
BstNI	CCWGG	1 cut(s)	279
BstNSI	RCATGY	1 cut(s)	270
BstSCI	CCNGG	1 cut(s)	277
BstSLI	GKGCMC	1 cut(s)	166
BstUI	CGCG	1 cut(s)	154
BstV2I	GAAGAC	2 cut(s)	167, 208
BtrI	CACGTC	1 cut(s)	173
BtsCI	GGATG	1 cut(s)	243
CviAII	CATG	2 cut(s)	131, 267
CviJI	RGCY	2 cut(s)	212, 297
CviKI_1	RGCY	2 cut(s)	212, 297
DdeI	CTNAG	1 cut(s)	110
DpnI	GATC	2 cut(s)	76, 292
DpnII	GATC	2 cut(s)	74, 290
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	277
FaeI	CATG	2 cut(s)	134, 270
FaiI	YATR	3 cut(s)	24, 132, 268
FatI	CATG	2 cut(s)	130, 266
FokI	GGATG	1 cut(s)	230
HapII	CCGG	1 cut(s)	198
Hin1II	CATG	2 cut(s)	134, 270
HinfI	GANTC	2 cut(s)	67, 100
HpaII	CCGG	1 cut(s)	198
Hpy166II	GTNNAC	1 cut(s)	164
Hpy188III	TCNNGA	3 cut(s)	221, 237, 251
Hpy8I	GTNNAC	1 cut(s)	164
Hpy99I	CGWCG	3 cut(s)	75, 109, 186
HpyAV	CCTTC	1 cut(s)	257
HpyCH4IV	ACGT	2 cut(s)	172, 184
HpyCH4V	TGCA	1 cut(s)	164
HpyF3I	CTNAG	1 cut(s)	110
HpySE526I	ACGT	2 cut(s)	172, 184
Hsp92II	CATG	2 cut(s)	134, 270
Kzo9I	GATC	2 cut(s)	74, 290
LpnPI	CCDG	6 cut(s)	211, 222, 248, 264, 283, 291
MaeII	ACGT	2 cut(s)	172, 184
MalI	GATC	2 cut(s)	76, 292
MboI	GATC	2 cut(s)	74, 290
MboII	GAAGA	4 cut(s)	43, 46, 167, 213
MhlI	GDGCHC	1 cut(s)	166
MluCI	AATT	3 cut(s)	44, 126, 137
MnlI	CCTC	2 cut(s)	30, 88
MroXI	GAANNNNTTC	1 cut(s)	258
MspI	CCGG	1 cut(s)	198
MspR9I	CCNGG	1 cut(s)	279
MvaI	CCWGG	1 cut(s)	279
MvnI	CGCG	1 cut(s)	154
NdeII	GATC	2 cut(s)	74, 290
NlaIII	CATG	2 cut(s)	134, 270
NspI	RCATGY	1 cut(s)	270
PcsI	WCGNNNNNNNCGW	1 cut(s)	178
PdmI	GAANNNNTTC	1 cut(s)	258
PfeI	GAWTC	2 cut(s)	67, 100
Psp6I	CCWGG	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	277
Sau3AI	GATC	2 cut(s)	74, 290
ScrFI	CCNGG	1 cut(s)	279
SduI	GDGCHC	1 cut(s)	166
SetI	ASST	5 cut(s)	169, 175, 187, 214, 299
Sse9I	AATT	3 cut(s)	44, 126, 137
SsiI	CCGC	1 cut(s)	152
StyD4I	CCNGG	1 cut(s)	277
TaiI	ACGT	2 cut(s)	175, 187
TaqI	TCGA	4 cut(s)	73, 181, 194, 220
TaqII	GACCGA	1 cut(s)	220
TasI	AATT	3 cut(s)	44, 126, 137
TfiI	GAWTC	2 cut(s)	67, 100
TspDTI	ATGAA	2 cut(s)	119, 167
TspGWI	ACGGA	1 cut(s)	93
VneI	GTGCAC	1 cut(s)	162
XapI	RAATTY	1 cut(s)	126
XceI	RCATGY	1 cut(s)	270
XmnI	GAANNNNTTC	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.