Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0019580

Physical Location & Seq

Genomic Coordinates Forward (+)

59772 .. 60326

Gene Structure 555 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

ATCG00520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGAGTTGGCGATCAGAATCTATATGGATAGAATTTATAACGGGGTCTCGAAAAACAAGTAATTTCTGCTGGGCCTTTATCCTATTTTTAGGTTCATTAGGATTCTTATTGGTTGGAACTTCCAGTTATCTTGGTAGAAATGTTATATCGTTATTTCCGTCCCAGCAAATCATTTTTTTTCCACAAGGGATTGTGATGTCTTTCTATGGGATCGCAGGTCTCTTTATTAGTTGCTATTTGTGGTGCACTATTTTGTGGAATGTGGGTAGTGGTTATGATCTTTTCGACCGAAAAGAAGGAATAGTGCGTATTTTTCGTTGGGGATTTCCTGGAAAAAGTCGTCGCATCTTTTTACGATTCTTTATGAAAGATATTCAGTCCATCAGAATAGAAGTTAAAGAGGGTGTTTCTGCCCGGCGTGTCCTTTATATGGAAATTCGAGGTCAAGGGGCTATTCCTTTAATTCGTACTGATGAGAATTTTACTACACGAGAAATTGAGCAAAAAGCTGCTGAATTGGCTTACTTCTTGCGTGTACCAATTGAAGTATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0015979 GO:0016043 GO:0019684 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048564 GO:0051082 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ycf4

Protein Analysis

184

Amino Acids

21.41

Weight (kDa)

9.62

Isoelectric Point (pI)

63.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ycf4	PF02392	7 - 174	4.2e-73	Ycf4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00520
malus_domestica	MD15G1388400.v1.1
pyrus_communis	pycom02g25860
rosa_chinensis	RchiOBHm_Chr5g0042981 RchiOBHm_CPg0502091
rosa_samantha	Rh5BG294600 Rh5DG304400

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	38
Acc36I	ACCTGC	1 cut(s)	206
AclWI	GGATC	1 cut(s)	218
AcsI	RAATTY	3 cut(s)	32, 435, 478
AfaI	GTAC	2 cut(s)	469, 537
AfiI	CCNNNNNNNGG	1 cut(s)	430
AgsI	TTSAA	1 cut(s)	545
AjnI	CCWGG	1 cut(s)	328
AluBI	AGCT	1 cut(s)	509
AluI	AGCT	1 cut(s)	509
Alw21I	GWGCWC	1 cut(s)	248
Alw26I	GTCTC	2 cut(s)	51, 224
Alw44I	GTGCAC	1 cut(s)	244
AlwI	GGATC	1 cut(s)	218
AoxI	GGCC	1 cut(s)	72
ApaLI	GTGCAC	1 cut(s)	244
ApeKI	GCWGC	1 cut(s)	509
ApoI	RAATTY	3 cut(s)	32, 435, 478
AspS9I	GGNCC	1 cut(s)	72
AsuC2I	CCSGG	1 cut(s)	415
BaeGI	GKGCMC	1 cut(s)	248
BauI	CACGAG	1 cut(s)	489
Bbv12I	GWGCWC	1 cut(s)	248
BbvI	GCAGC	1 cut(s)	496
BccI	CCATC	1 cut(s)	389
BciT130I	CCWGG	1 cut(s)	330
BcnI	CCSGG	1 cut(s)	415
BcoDI	GTCTC	2 cut(s)	51, 224
BfuAI	ACCTGC	1 cut(s)	206
BisI	GCNGC	1 cut(s)	510
BlsI	GCNGC	1 cut(s)	511
Bme1390I	CCNGG	2 cut(s)	330, 415
BmgT120I	GGNCC	1 cut(s)	72
BmrFI	CCNGG	2 cut(s)	330, 415
BmsI	GCATC	1 cut(s)	354
BpuMI	CCSGG	1 cut(s)	415
BsaBI	GATNNNNATC	1 cut(s)	16
BsaI	GGTCTC	2 cut(s)	51, 224
Bsc4I	CCNNNNNNNGG	1 cut(s)	430
Bse1I	ACTGG	1 cut(s)	123
Bse8I	GATNNNNATC	1 cut(s)	16
BseBI	CCWGG	1 cut(s)	330
BseJI	GATNNNNATC	1 cut(s)	16
BseLI	CCNNNNNNNGG	1 cut(s)	430
BseNI	ACTGG	1 cut(s)	123
BseSI	GKGCMC	1 cut(s)	248
BseXI	GCAGC	1 cut(s)	496
BseYI	CCCAGC	2 cut(s)	69, 162
Bsh1285I	CGRYCG	1 cut(s)	289
BshFI	GGCC	1 cut(s)	74
BsiEI	CGRYCG	1 cut(s)	289
BsiHKAI	GWGCWC	1 cut(s)	248
BsiSI	CCGG	1 cut(s)	415
BslFI	GGGAC	1 cut(s)	145
BslI	CCNNNNNNNGG	1 cut(s)	430
BsmAI	GTCTC	2 cut(s)	51, 224
BsmFI	GGGAC	1 cut(s)	145
BsnI	GGCC	1 cut(s)	74
Bso31I	GGTCTC	2 cut(s)	51, 224
Bsp1286I	GDGCHC	1 cut(s)	248
Bsp143I	GATC	3 cut(s)	11, 210, 277
BspANI	GGCC	1 cut(s)	74
BspMI	ACCTGC	1 cut(s)	206
BspPI	GGATC	1 cut(s)	218
BspTNI	GGTCTC	2 cut(s)	51, 224
BsrI	ACTGG	1 cut(s)	123
BssMI	GATC	3 cut(s)	11, 210, 277
BssSI	CACGAG	1 cut(s)	489
Bst2BI	CACGAG	1 cut(s)	489
Bst2UI	CCWGG	1 cut(s)	330
BstKTI	GATC	3 cut(s)	14, 213, 280
BstMAI	GTCTC	2 cut(s)	51, 224
BstMBI	GATC	3 cut(s)	11, 210, 277
BstMCI	CGRYCG	1 cut(s)	289
BstMWI	GCNNNNNNNGC	1 cut(s)	518
BstNI	CCWGG	1 cut(s)	330
BstSCI	CCNGG	2 cut(s)	328, 413
BstSLI	GKGCMC	1 cut(s)	248
BstV1I	GCAGC	1 cut(s)	496
BsuRI	GGCC	1 cut(s)	74
BveI	ACCTGC	1 cut(s)	206
Cfr13I	GGNCC	1 cut(s)	72
Csp6I	GTAC	2 cut(s)	468, 536
CviJI	RGCY	4 cut(s)	74, 452, 509, 521
CviKI_1	RGCY	4 cut(s)	74, 452, 509, 521
CviQI	GTAC	2 cut(s)	468, 536
DpnI	GATC	3 cut(s)	13, 212, 279
DpnII	GATC	3 cut(s)	11, 210, 277
Eco31I	GGTCTC	2 cut(s)	51, 224
EcoRII	CCWGG	1 cut(s)	328
FaiI	YATR	9 cut(s)	23, 25, 38, 146, 207, 276, 365, 429, 431
FaqI	GGGAC	1 cut(s)	145
Fnu4HI	GCNGC	1 cut(s)	510
Fsp4HI	GCNGC	1 cut(s)	510
GluI	GCNGC	1 cut(s)	510
GsaI	CCCAGC	2 cut(s)	73, 166
HaeIII	GGCC	1 cut(s)	74
HapII	CCGG	1 cut(s)	415
HinfI	GANTC	3 cut(s)	17, 102, 357
HpaII	CCGG	1 cut(s)	415
Hpy166II	GTNNAC	2 cut(s)	246, 536
Hpy188I	TCNGA	2 cut(s)	16, 386
Hpy188III	TCNNGA	1 cut(s)	48
Hpy8I	GTNNAC	2 cut(s)	246, 536
Hpy99I	CGWCG	1 cut(s)	345
HpyAV	CCTTC	1 cut(s)	290
HpyCH4V	TGCA	1 cut(s)	246
HpyF10VI	GCNNNNNNNGC	1 cut(s)	518
Kzo9I	GATC	3 cut(s)	11, 210, 277
LpnPI	CCDG	7 cut(s)	55, 136, 176, 201, 315, 342, 428
Lsp1109I	GCAGC	1 cut(s)	496
LweI	GCATC	1 cut(s)	354
MalI	GATC	3 cut(s)	13, 212, 279
MboI	GATC	3 cut(s)	11, 210, 277
MfeI	CAATTG	1 cut(s)	540
MhlI	GDGCHC	1 cut(s)	248
MluCI	AATT	8 cut(s)	32, 61, 435, 462, 478, 495, 515, 540
MmeI	TCCRAC	1 cut(s)	94
MnlI	CCTC	2 cut(s)	394, 434
MseI	TTAA	2 cut(s)	396, 461
MspI	CCGG	1 cut(s)	415
MspR9I	CCNGG	2 cut(s)	330, 415
MunI	CAATTG	1 cut(s)	540
MvaI	CCWGG	1 cut(s)	330
MwoI	GCNNNNNNNGC	1 cut(s)	518
NciI	CCSGG	1 cut(s)	415
NdeII	GATC	3 cut(s)	11, 210, 277
PcsI	WCGNNNNNNNCGW	1 cut(s)	155
PfeI	GAWTC	3 cut(s)	17, 102, 357
PfoI	TCCNGGA	1 cut(s)	328
PkrI	GCNGC	1 cut(s)	511
PsiI	TTATAA	1 cut(s)	38
Psp6I	CCWGG	1 cut(s)	328
PspFI	CCCAGC	2 cut(s)	69, 162
PspGI	CCWGG	1 cut(s)	328
PspPI	GGNCC	1 cut(s)	72
RsaI	GTAC	2 cut(s)	469, 537
RsaNI	GTAC	2 cut(s)	468, 536
SaqAI	TTAA	2 cut(s)	396, 461
SatI	GCNGC	1 cut(s)	510
Sau3AI	GATC	3 cut(s)	11, 210, 277
Sau96I	GGNCC	1 cut(s)	72
ScrFI	CCNGG	2 cut(s)	330, 415
SduI	GDGCHC	1 cut(s)	248
SetI	ASST	4 cut(s)	94, 220, 445, 511
SfaNI	GCATC	1 cut(s)	354
Sse9I	AATT	8 cut(s)	32, 61, 435, 462, 478, 495, 515, 540
StyD4I	CCNGG	2 cut(s)	328, 413
TaqI	TCGA	3 cut(s)	49, 285, 439
TaqII	GACCGA	1 cut(s)	303
TasI	AATT	8 cut(s)	32, 61, 435, 462, 478, 495, 515, 540
TfiI	GAWTC	3 cut(s)	17, 102, 357
Tru1I	TTAA	2 cut(s)	396, 461
Tru9I	TTAA	2 cut(s)	396, 461
TseI	GCWGC	1 cut(s)	509
TspDTI	ATGAA	2 cut(s)	84, 380
TspGWI	ACGGA	1 cut(s)	147
VneI	GTGCAC	1 cut(s)	244
XapI	RAATTY	3 cut(s)	32, 435, 478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.