Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0019580

Physical Location & Seq

Genomic Coordinates Reverse (-)

48080990 .. 48081229

Gene Structure 240 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1388400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGAGTTGGCGATCAGAACGTATATGGGTAGAACTTATAGCGGGGTCTCGAAAAACAAGTAATTTCTGTTGGGCCTTTATTCTTTTTTTTTTTTTAGGTTCATTAGGGTTTTTATTGGTTGGAACGTCTAGTTATTTTGATAGGAATTTTATATCTTTATTTCCTTCTCAACAAATATTATTTTTTTTTTCCACAAAGTATCATGATGTCTTTCTATGGGATCACAGGTCCTTTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0015979 GO:0016043 GO:0019684 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048564 GO:0051082 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ycf4

Protein Analysis

80

Amino Acids

9.56

Weight (kDa)

9.03

Isoelectric Point (pI)

53.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ycf4	PF02392	7 - 62	2.3e-13	Ycf4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0019580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00520
malus_domestica	MD15G1388400.v1.1
pyrus_communis	pycom02g25860
rosa_chinensis	RchiOBHm_Chr5g0042981 RchiOBHm_CPg0502091
rosa_samantha	Rh5BG294600 Rh5DG304400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	41
AclWI	GGATC	1 cut(s)	228
AcsI	RAATTY	1 cut(s)	145
Alw26I	GTCTC	1 cut(s)	51
AlwI	GGATC	1 cut(s)	228
AoxI	GGCC	1 cut(s)	72
ApoI	RAATTY	1 cut(s)	145
AspS9I	GGNCC	2 cut(s)	72, 228
AvaII	GGWCC	1 cut(s)	228
BcoDI	GTCTC	1 cut(s)	51
BfaI	CTAG	1 cut(s)	129
Bme18I	GGWCC	1 cut(s)	228
BmgT120I	GGNCC	2 cut(s)	72, 228
BsaI	GGTCTC	1 cut(s)	51
BshFI	GGCC	1 cut(s)	74
BsmAI	GTCTC	1 cut(s)	51
BsnI	GGCC	1 cut(s)	74
Bso31I	GGTCTC	1 cut(s)	51
Bsp143I	GATC	2 cut(s)	11, 220
BspACI	CCGC	1 cut(s)	41
BspANI	GGCC	1 cut(s)	74
BspHI	TCATGA	1 cut(s)	202
BspPI	GGATC	1 cut(s)	228
BspTNI	GGTCTC	1 cut(s)	51
BssMI	GATC	2 cut(s)	11, 220
BstKTI	GATC	2 cut(s)	14, 223
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	2 cut(s)	11, 220
BsuRI	GGCC	1 cut(s)	74
CciI	TCATGA	1 cut(s)	202
Cfr13I	GGNCC	2 cut(s)	72, 228
CviAII	CATG	1 cut(s)	203
CviJI	RGCY	1 cut(s)	74
CviKI_1	RGCY	1 cut(s)	74
DpnI	GATC	2 cut(s)	13, 222
DpnII	GATC	2 cut(s)	11, 220
Eco31I	GGTCTC	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	228
EcoO109I	RGGNCCY	1 cut(s)	228
FaeI	CATG	1 cut(s)	206
FaiI	YATR	6 cut(s)	23, 25, 38, 152, 204, 217
FatI	CATG	1 cut(s)	202
FauI	CCCGC	1 cut(s)	34
FspBI	CTAG	1 cut(s)	129
HaeIII	GGCC	1 cut(s)	74
Hin1II	CATG	1 cut(s)	206
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	2 cut(s)	48, 203
HpyAV	CCTTC	1 cut(s)	174
HpyCH4IV	ACGT	2 cut(s)	19, 125
HpySE526I	ACGT	2 cut(s)	19, 125
Hsp92II	CATG	1 cut(s)	206
Kzo9I	GATC	2 cut(s)	11, 220
LpnPI	CCDG	1 cut(s)	211
MaeI	CTAG	1 cut(s)	129
MaeII	ACGT	2 cut(s)	19, 125
MalI	GATC	2 cut(s)	13, 222
MboI	GATC	2 cut(s)	11, 220
MluCI	AATT	2 cut(s)	61, 145
MmeI	TCCRAC	1 cut(s)	100
NdeII	GATC	2 cut(s)	11, 220
NlaIII	CATG	1 cut(s)	206
PagI	TCATGA	1 cut(s)	202
PpuMI	RGGWCCY	1 cut(s)	228
Psp5II	RGGWCCY	1 cut(s)	228
PspPI	GGNCC	2 cut(s)	72, 228
PspPPI	RGGWCCY	1 cut(s)	228
Sau3AI	GATC	2 cut(s)	11, 220
Sau96I	GGNCC	2 cut(s)	72, 228
SetI	ASST	4 cut(s)	22, 100, 128, 230
SgeI	CNNG	5 cut(s)	54, 60, 69, 141, 215
SinI	GGWCC	1 cut(s)	228
Sse9I	AATT	2 cut(s)	61, 145
SsiI	CCGC	1 cut(s)	41
SspI	AATATT	1 cut(s)	177
SspMI	CTAG	1 cut(s)	129
TaiI	ACGT	2 cut(s)	22, 128
TaqI	TCGA	1 cut(s)	49
TasI	AATT	2 cut(s)	61, 145
TspDTI	ATGAA	1 cut(s)	90
VpaK11BI	GGWCC	1 cut(s)	228
XapI	RAATTY	1 cut(s)	145
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.