Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016509

Physical Location & Seq

Genomic Coordinates Reverse (-)

78960 .. 79376

Gene Structure 417 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

ATCG00750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGCAAAACCTATATTAAGAATTGGTTCGCGTAAAAATACACGTAGTGGTTCACGTAAAAATGTACGTAGAATACCAAAGGGAGTTATTCATGTTCAAGCAAGTTTCAACAATACCATTGTAACCGTTACAGATGTACGGGGTCGGGTGATTTCTTGGTCCTCCGCAGGTACTTGTGGATTCCGGGGTACAAGAAGAGGAACACCCTTTGCTGCCCAAACCGCAGCAGGAAATGCTATTCGAGCAGTAGTGGATCAAGGTATGCAACGAGCTGAAGTAAGGATAAAAGGCCCTGGACTCGGAAGAGATGCGGCATTACGAGCTATTCGTAGAAGCGGTATACTTTTAAGTTTCGTACGAGATGTAACCCCTATGCCACATAATGGTTGTAGACCCCCTAAAAAAAGACGTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000313 GO:0000314 GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030490 GO:0031974 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048027 GO:0065003 GO:0070013 GO:0070181 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0098798 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S11

Protein Analysis

138

Amino Acids

15.02

Weight (kDa)

12.0

Isoelectric Point (pI)

41.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S11	PF00411	28 - 137	1.2e-50	Ribosomal protein S11

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0016509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00750
fragaria_vesca	FvH4_c3g00200
pyrus_communis	pycom12397g00170
rosa_chinensis	RchiOBHm_CPg0501901
rosa_laevigata	RLG00000000055 RLG00000000071 RLG00000000177 RLG00000000219 RLG00000037103
rosa_roxburghii	Rroxscaffold_2G00119010
rosa_rugosa	RorugMtG0002700.1
rosa_samantha	Rh1CG032700
rosa_wichuraiana	Rw7G013550 Rw7G013560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	158
AccB7I	CCANNNNNTGG	1 cut(s)	383
AccI	GTMKAC	2 cut(s)	340, 391
AccII	CGCG	1 cut(s)	31
AciI	CCGC	4 cut(s)	165, 222, 311, 336
AclWI	GGATC	1 cut(s)	261
AcuI	CTGAAG	1 cut(s)	294
AdeI	CACNNNGTG	1 cut(s)	47
AfaI	GTAC	5 cut(s)	66, 138, 172, 190, 357
AfiI	CCNNNNNNNGG	2 cut(s)	299, 383
AflIII	ACRYGT	2 cut(s)	41, 409
AgsI	TTSAA	2 cut(s)	98, 109
AjiI	CACGTC	1 cut(s)	410
AjnI	CCWGG	1 cut(s)	292
AluBI	AGCT	2 cut(s)	272, 323
AluI	AGCT	2 cut(s)	272, 323
AlwI	GGATC	1 cut(s)	261
AoxI	GGCC	1 cut(s)	289
ApeKI	GCWGC	2 cut(s)	212, 224
Asp700I	GAANNNNTTC	1 cut(s)	25
AspS9I	GGNCC	2 cut(s)	159, 290
AsuC2I	CCSGG	1 cut(s)	185
AsuHPI	GGTGA	1 cut(s)	160
AvaII	GGWCC	1 cut(s)	159
BbvI	GCAGC	2 cut(s)	199, 236
BciT130I	CCWGG	1 cut(s)	294
BcnI	CCSGG	1 cut(s)	185
BfuAI	ACCTGC	1 cut(s)	158
BisI	GCNGC	3 cut(s)	213, 225, 312
BlsI	GCNGC	3 cut(s)	214, 226, 313
Bme1390I	CCNGG	2 cut(s)	185, 294
Bme18I	GGWCC	1 cut(s)	159
BmgBI	CACGTC	1 cut(s)	410
BmgT120I	GGNCC	2 cut(s)	159, 290
BmrFI	CCNGG	2 cut(s)	185, 294
BmsI	GCATC	1 cut(s)	298
BpuMI	CCSGG	1 cut(s)	185
BsaAI	YACGTR	3 cut(s)	44, 56, 68
BsaJI	CCNNGG	2 cut(s)	184, 292
Bsc4I	CCNNNNNNNGG	2 cut(s)	299, 383
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	2 cut(s)	184, 292
BseLI	CCNNNNNNNGG	2 cut(s)	299, 383
BseXI	GCAGC	2 cut(s)	199, 236
Bsh1236I	CGCG	1 cut(s)	31
BshFI	GGCC	1 cut(s)	291
BsiSI	CCGG	1 cut(s)	184
BsiWI	CGTACG	1 cut(s)	355
BslI	CCNNNNNNNGG	2 cut(s)	299, 383
BsnI	GGCC	1 cut(s)	291
Bsp143I	GATC	1 cut(s)	253
BspACI	CCGC	4 cut(s)	165, 222, 311, 336
BspANI	GGCC	1 cut(s)	291
BspFNI	CGCG	1 cut(s)	31
BspMI	ACCTGC	1 cut(s)	158
BspPI	GGATC	1 cut(s)	261
BssECI	CCNNGG	2 cut(s)	184, 292
BssMI	GATC	1 cut(s)	253
BssNAI	GTATAC	1 cut(s)	341
Bst1107I	GTATAC	1 cut(s)	341
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	1 cut(s)	127
Bst6I	CTCTTC	2 cut(s)	190, 298
BstAPI	GCANNNNNTGC	1 cut(s)	233
BstBAI	YACGTR	3 cut(s)	44, 56, 68
BstFNI	CGCG	1 cut(s)	31
BstKTI	GATC	1 cut(s)	256
BstMBI	GATC	1 cut(s)	253
BstMWI	GCNNNNNNNGC	4 cut(s)	221, 233, 242, 320
BstNI	CCWGG	1 cut(s)	294
BstSCI	CCNGG	2 cut(s)	183, 292
BstSNI	TACGTA	1 cut(s)	68
BstUI	CGCG	1 cut(s)	31
BstV1I	GCAGC	2 cut(s)	199, 236
BstZ17I	GTATAC	1 cut(s)	341
BsuRI	GGCC	1 cut(s)	291
BtrI	CACGTC	1 cut(s)	410
BveI	ACCTGC	1 cut(s)	158
Cfr13I	GGNCC	2 cut(s)	159, 290
Csp6I	GTAC	5 cut(s)	65, 137, 171, 189, 356
CviAII	CATG	1 cut(s)	92
CviJI	RGCY	3 cut(s)	272, 291, 323
CviKI_1	RGCY	3 cut(s)	272, 291, 323
CviQI	GTAC	5 cut(s)	65, 137, 171, 189, 356
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
DraIII	CACNNNGTG	1 cut(s)	47
Eam1104I	CTCTTC	2 cut(s)	190, 298
EarI	CTCTTC	2 cut(s)	190, 298
Eco105I	TACGTA	1 cut(s)	68
Eco47I	GGWCC	1 cut(s)	159
Eco57I	CTGAAG	1 cut(s)	294
EcoO109I	RGGNCCY	1 cut(s)	290
EcoRII	CCWGG	1 cut(s)	292
FaeI	CATG	1 cut(s)	95
FaiI	YATR	7 cut(s)	14, 93, 263, 341, 374, 381, 415
FatI	CATG	1 cut(s)	91
FblI	GTMKAC	2 cut(s)	340, 391
Fnu4HI	GCNGC	3 cut(s)	213, 225, 312
Fsp4HI	GCNGC	3 cut(s)	213, 225, 312
GluI	GCNGC	3 cut(s)	213, 225, 312
HaeIII	GGCC	1 cut(s)	291
HapII	CCGG	1 cut(s)	184
Hin1II	CATG	1 cut(s)	95
HinfI	GANTC	2 cut(s)	180, 297
HpaII	CCGG	1 cut(s)	184
HphI	GGTGA	1 cut(s)	160
Hpy166II	GTNNAC	3 cut(s)	53, 341, 392
Hpy188I	TCNGA	1 cut(s)	302
Hpy8I	GTNNAC	3 cut(s)	53, 341, 392
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4IV	ACGT	4 cut(s)	43, 55, 67, 409
HpyCH4V	TGCA	1 cut(s)	265
HpyF10VI	GCNNNNNNNGC	4 cut(s)	221, 233, 242, 320
HpySE526I	ACGT	4 cut(s)	43, 55, 67, 409
Hsp92II	CATG	1 cut(s)	95
Kzo9I	GATC	1 cut(s)	253
LpnPI	CCDG	5 cut(s)	153, 197, 213, 279, 306
Lsp1109I	GCAGC	2 cut(s)	199, 236
LweI	GCATC	1 cut(s)	298
MaeII	ACGT	4 cut(s)	43, 55, 67, 409
MaeIII	GTNAC	3 cut(s)	121, 127, 364
MalI	GATC	1 cut(s)	255
MboI	GATC	1 cut(s)	253
MboII	GAAGA	2 cut(s)	207, 315
MluCI	AATT	1 cut(s)	21
MlyI	GAGTC	1 cut(s)	291
MnlI	CCTC	2 cut(s)	172, 191
MroXI	GAANNNNTTC	1 cut(s)	25
MseI	TTAA	2 cut(s)	17, 347
MspI	CCGG	1 cut(s)	184
MspR9I	CCNGG	2 cut(s)	185, 294
MvaI	CCWGG	1 cut(s)	294
MvnI	CGCG	1 cut(s)	31
MwoI	GCNNNNNNNGC	4 cut(s)	221, 233, 242, 320
NciI	CCSGG	1 cut(s)	185
NdeII	GATC	1 cut(s)	253
NlaIII	CATG	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	1 cut(s)	325
PdmI	GAANNNNTTC	1 cut(s)	25
PfeI	GAWTC	1 cut(s)	180
Pfl23II	CGTACG	1 cut(s)	355
PflMI	CCANNNNNTGG	1 cut(s)	383
PkrI	GCNGC	3 cut(s)	214, 226, 313
PleI	GAGTC	1 cut(s)	291
PpsI	GAGTC	1 cut(s)	291
Ppu21I	YACGTR	3 cut(s)	44, 56, 68
Psp6I	CCWGG	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	292
PspLI	CGTACG	1 cut(s)	355
PspPI	GGNCC	2 cut(s)	159, 290
RsaI	GTAC	5 cut(s)	66, 138, 172, 190, 357
RsaNI	GTAC	5 cut(s)	65, 137, 171, 189, 356
SaqAI	TTAA	2 cut(s)	17, 347
SatI	GCNGC	3 cut(s)	213, 225, 312
Sau3AI	GATC	1 cut(s)	253
Sau96I	GGNCC	2 cut(s)	159, 290
SchI	GAGTC	1 cut(s)	291
ScrFI	CCNGG	2 cut(s)	185, 294
SetI	ASST	9 cut(s)	13, 46, 58, 70, 172, 262, 274, 325, 412
SfaNI	GCATC	1 cut(s)	298
SinI	GGWCC	1 cut(s)	159
SnaBI	TACGTA	1 cut(s)	68
Sse9I	AATT	1 cut(s)	21
SsiI	CCGC	4 cut(s)	165, 222, 311, 336
StyD4I	CCNGG	2 cut(s)	183, 292
TaaI	ACNGT	1 cut(s)	127
TaiI	ACGT	4 cut(s)	46, 58, 70, 412
TaqI	TCGA	1 cut(s)	241
TasI	AATT	1 cut(s)	21
TauI	GCSGC	1 cut(s)	314
TfiI	GAWTC	1 cut(s)	180
Tru1I	TTAA	2 cut(s)	17, 347
Tru9I	TTAA	2 cut(s)	17, 347
TseI	GCWGC	2 cut(s)	212, 224
TspDTI	ATGAA	1 cut(s)	80
Van91I	CCANNNNNTGG	1 cut(s)	383
VpaK11BI	GGWCC	1 cut(s)	159
XmiI	GTMKAC	2 cut(s)	340, 391
XmnI	GAANNNNTTC	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.