Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0016509

Physical Location & Seq

Genomic Coordinates Forward (+)

6300947 .. 6301363

Gene Structure 417 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG032700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGCAAAACCTATACCAAAAATTGGTTCACGTAGAAATAGACGTATTGGTTCACGTAAGAATGCGCGTAGAATACCAAAGGGAGTTATTCATGTTCAAGCAAGTTTCAACAATACCATTGTGACTGTTACAGATGTACGGGGTCGAGTAATTTCTTGGTCCTCCGCCGGTACTTGTGGATTCAAGGGTACAAGAAGAGGGACACCATTTGCCGCTCAAACCGCAGTGGGAAATGCTATTCGTACAGTGGTGGATCAAGGTATGCAACGAGCAGAAGTCATGATAAAAGGCCCGGGTCTCGGGAGAGATGCGGCATTAAGAGCTATTCGTAGAAGTGGCATACTATTAAGTTTCATACGGGATGTAACCCCTATGCCACATAATGGCTGTAGGCCCCCCAAAAAAAGGCGTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000313 GO:0000314 GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030490 GO:0031974 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048027 GO:0065003 GO:0070013 GO:0070181 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0098798 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S11

Protein Analysis

138

Amino Acids

15.08

Weight (kDa)

12.0

Isoelectric Point (pI)

42.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S11	PF00411	28 - 137	1e-50	Ribosomal protein S11

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0016509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00750
fragaria_vesca	FvH4_c3g00200
pyrus_communis	pycom12397g00170
rosa_chinensis	RchiOBHm_CPg0501901
rosa_laevigata	RLG00000000055 RLG00000000071 RLG00000000177 RLG00000000219 RLG00000037103
rosa_roxburghii	Rroxscaffold_2G00119010
rosa_rugosa	RorugMtG0002700.1
rosa_samantha	Rh1CG032700
rosa_wichuraiana	Rw7G013550 Rw7G013560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	23, 383
AccBSI	CCGCTC	1 cut(s)	215
AccII	CGCG	1 cut(s)	67
AciI	CCGC	4 cut(s)	165, 213, 222, 311
AclWI	GGATC	1 cut(s)	261
AfaI	GTAC	4 cut(s)	138, 172, 190, 244
AfiI	CCNNNNNNNGG	4 cut(s)	23, 299, 383, 405
AgsI	TTSAA	3 cut(s)	98, 109, 184
AjuI	GAANNNNNNNTTGG	2 cut(s)	10, 42
AluBI	AGCT	1 cut(s)	323
AluI	AGCT	1 cut(s)	323
Alw26I	GTCTC	1 cut(s)	302
AlwI	GGATC	1 cut(s)	261
Ama87I	CYCGRG	2 cut(s)	292, 299
AoxI	GGCC	2 cut(s)	289, 392
AspLEI	GCGC	1 cut(s)	67
AspS9I	GGNCC	3 cut(s)	159, 290, 393
AsuC2I	CCSGG	2 cut(s)	293, 294
AvaI	CYCGRG	2 cut(s)	292, 299
AvaII	GGWCC	1 cut(s)	159
BcnI	CCSGG	2 cut(s)	293, 294
BcoDI	GTCTC	1 cut(s)	302
BfmI	CTRYAG	1 cut(s)	388
BisI	GCNGC	2 cut(s)	213, 312
BlsI	GCNGC	2 cut(s)	214, 313
Bme1390I	CCNGG	2 cut(s)	293, 294
Bme18I	GGWCC	1 cut(s)	159
BmeT110I	CYCGRG	2 cut(s)	292, 299
BmgT120I	GGNCC	3 cut(s)	159, 290, 393
BmiI	GGNNCC	1 cut(s)	395
BmrFI	CCNGG	2 cut(s)	293, 294
BmsI	GCATC	1 cut(s)	298
BpuMI	CCSGG	2 cut(s)	293, 294
BsaAI	YACGTR	2 cut(s)	32, 56
BsaI	GGTCTC	1 cut(s)	302
BsaJI	CCNNGG	1 cut(s)	292
Bsc4I	CCNNNNNNNGG	4 cut(s)	23, 299, 383, 405
Bse118I	RCCGGY	1 cut(s)	167
BseDI	CCNNGG	1 cut(s)	292
BseGI	GGATG	1 cut(s)	367
BseLI	CCNNNNNNNGG	4 cut(s)	23, 299, 383, 405
Bsh1236I	CGCG	1 cut(s)	67
BshFI	GGCC	2 cut(s)	291, 394
BsiHKCI	CYCGRG	2 cut(s)	292, 299
BsiSI	CCGG	2 cut(s)	168, 293
BslFI	GGGAC	1 cut(s)	214
BslI	CCNNNNNNNGG	4 cut(s)	23, 299, 383, 405
BsmAI	GTCTC	1 cut(s)	302
BsmFI	GGGAC	1 cut(s)	214
BsmI	GAATGC	1 cut(s)	67
BsnI	GGCC	2 cut(s)	291, 394
Bso31I	GGTCTC	1 cut(s)	302
BsoBI	CYCGRG	2 cut(s)	292, 299
Bsp143I	GATC	1 cut(s)	253
BspACI	CCGC	4 cut(s)	165, 213, 222, 311
BspANI	GGCC	2 cut(s)	291, 394
BspFNI	CGCG	1 cut(s)	67
BspHI	TCATGA	1 cut(s)	279
BspLI	GGNNCC	1 cut(s)	395
BspPI	GGATC	1 cut(s)	261
BspTNI	GGTCTC	1 cut(s)	302
BsrBI	CCGCTC	1 cut(s)	215
BsrFI	RCCGGY	1 cut(s)	167
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	292
BssMI	GATC	1 cut(s)	253
Bst4CI	ACNGT	2 cut(s)	127, 247
Bst6I	CTCTTC	1 cut(s)	190
BstBAI	YACGTR	2 cut(s)	32, 56
BstF5I	GGATG	1 cut(s)	367
BstFNI	CGCG	1 cut(s)	67
BstHHI	GCGC	1 cut(s)	67
BstKTI	GATC	1 cut(s)	256
BstMAI	GTCTC	1 cut(s)	302
BstMBI	GATC	1 cut(s)	253
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 320
BstSCI	CCNGG	2 cut(s)	291, 292
BstSFI	CTRYAG	1 cut(s)	388
BstUI	CGCG	1 cut(s)	67
BsuRI	GGCC	2 cut(s)	291, 394
BtsCI	GGATG	1 cut(s)	367
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	2 cut(s)	231, 252
CciI	TCATGA	1 cut(s)	279
CfoI	GCGC	1 cut(s)	67
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	3 cut(s)	159, 290, 393
Cfr9I	CCCGGG	1 cut(s)	292
Csp6I	GTAC	4 cut(s)	137, 171, 189, 243
CviAII	CATG	2 cut(s)	92, 280
CviJI	RGCY	4 cut(s)	291, 323, 387, 394
CviKI_1	RGCY	4 cut(s)	291, 323, 387, 394
CviQI	GTAC	4 cut(s)	137, 171, 189, 243
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
Eam1104I	CTCTTC	1 cut(s)	190
EarI	CTCTTC	1 cut(s)	190
EciI	GGCGGA	1 cut(s)	154
Eco31I	GGTCTC	1 cut(s)	302
Eco47I	GGWCC	1 cut(s)	159
Eco88I	CYCGRG	2 cut(s)	292, 299
EcoO109I	RGGNCCY	1 cut(s)	393
FaeI	CATG	2 cut(s)	95, 283
FaiI	YATR	8 cut(s)	14, 93, 263, 281, 341, 356, 374, 381
FaqI	GGGAC	1 cut(s)	214
FatI	CATG	2 cut(s)	91, 279
Fnu4HI	GCNGC	2 cut(s)	213, 312
FokI	GGATG	1 cut(s)	374
Fsp4HI	GCNGC	2 cut(s)	213, 312
GlaI	GCGC	1 cut(s)	66
GluI	GCNGC	2 cut(s)	213, 312
HaeIII	GGCC	2 cut(s)	291, 394
HapII	CCGG	2 cut(s)	168, 293
HhaI	GCGC	1 cut(s)	67
Hin1II	CATG	2 cut(s)	95, 283
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HinfI	GANTC	1 cut(s)	180
HpaII	CCGG	2 cut(s)	168, 293
Hpy166II	GTNNAC	2 cut(s)	29, 53
Hpy188III	TCNNGA	2 cut(s)	280, 301
Hpy8I	GTNNAC	2 cut(s)	29, 53
HpyCH4III	ACNGT	2 cut(s)	127, 247
HpyCH4IV	ACGT	3 cut(s)	31, 43, 55
HpyCH4V	TGCA	1 cut(s)	265
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 320
HpySE526I	ACGT	3 cut(s)	31, 43, 55
Hsp92II	CATG	2 cut(s)	95, 283
HspAI	GCGC	1 cut(s)	65
Kzo9I	GATC	1 cut(s)	253
LpnPI	CCDG	2 cut(s)	181, 306
LweI	GCATC	1 cut(s)	298
MaeII	ACGT	3 cut(s)	31, 43, 55
MaeIII	GTNAC	3 cut(s)	121, 127, 364
MalI	GATC	1 cut(s)	255
MbiI	CCGCTC	1 cut(s)	215
MboI	GATC	1 cut(s)	253
MboII	GAAGA	1 cut(s)	207
MluCI	AATT	2 cut(s)	21, 150
MnlI	CCTC	2 cut(s)	172, 191
MseI	TTAA	2 cut(s)	317, 347
MspI	CCGG	2 cut(s)	168, 293
MspR9I	CCNGG	2 cut(s)	293, 294
Mva1269I	GAATGC	1 cut(s)	67
MvnI	CGCG	1 cut(s)	67
MwoI	GCNNNNNNNGC	2 cut(s)	221, 320
NciI	CCSGG	2 cut(s)	293, 294
NdeII	GATC	1 cut(s)	253
NlaIII	CATG	2 cut(s)	95, 283
NlaIV	GGNNCC	1 cut(s)	395
NmuCI	GTSAC	1 cut(s)	121
PagI	TCATGA	1 cut(s)	279
PctI	GAATGC	1 cut(s)	67
PfeI	GAWTC	1 cut(s)	180
PflMI	CCANNNNNTGG	2 cut(s)	23, 383
PkrI	GCNGC	2 cut(s)	214, 313
Ppu21I	YACGTR	2 cut(s)	32, 56
PspN4I	GGNNCC	1 cut(s)	395
PspPI	GGNCC	3 cut(s)	159, 290, 393
RsaI	GTAC	4 cut(s)	138, 172, 190, 244
RsaNI	GTAC	4 cut(s)	137, 171, 189, 243
SaqAI	TTAA	2 cut(s)	317, 347
SatI	GCNGC	2 cut(s)	213, 312
Sau3AI	GATC	1 cut(s)	253
Sau96I	GGNCC	3 cut(s)	159, 290, 393
ScrFI	CCNGG	2 cut(s)	293, 294
SetI	ASST	6 cut(s)	13, 34, 46, 58, 262, 325
SfaNI	GCATC	1 cut(s)	298
SfcI	CTRYAG	1 cut(s)	388
SinI	GGWCC	1 cut(s)	159
SmaI	CCCGGG	1 cut(s)	294
Sse9I	AATT	2 cut(s)	21, 150
SsiI	CCGC	4 cut(s)	165, 213, 222, 311
StyD4I	CCNGG	2 cut(s)	291, 292
TaaI	ACNGT	2 cut(s)	127, 247
TaiI	ACGT	3 cut(s)	34, 46, 58
TaqI	TCGA	1 cut(s)	145
TasI	AATT	2 cut(s)	21, 150
TauI	GCSGC	2 cut(s)	215, 314
TfiI	GAWTC	1 cut(s)	180
Tru1I	TTAA	2 cut(s)	317, 347
Tru9I	TTAA	2 cut(s)	317, 347
TscAI	CASTG	2 cut(s)	231, 252
TseFI	GTSAC	1 cut(s)	121
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	2 cut(s)	80, 343
TspMI	CCCGGG	1 cut(s)	292
TspRI	CASTG	2 cut(s)	231, 252
Van91I	CCANNNNNTGG	2 cut(s)	23, 383
VpaK11BI	GGWCC	1 cut(s)	159
XmaI	CCCGGG	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.