Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0023867

Physical Location & Seq

Genomic Coordinates Reverse (-)

117804 .. 118109

Gene Structure 306 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

ATCG01070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGATACTCGAACATGTACTTGTTTTGAGTGCCTATTTATTTTTGATTGGTCTTTATGGATTGATCACAAGTCGAAATATGGTTAGGGCTCTTATGTGTCTTGAACTTATACTCAATGCAGTTAATATGAATTTCGTAACATTTTCTGATTTTTTTGATAATTCCCAACTAAAAGGGGAAATTTTCTGCATTTTTGTTATAGCAATTGCAGCCGCTGAAGCAGCTATTGGATTAGCTATAGTCTCGTCAATTTATCGTAACAGAAAATCAATTCGCATAAACCAATCGACCTTATTAAATAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0003959 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0008137 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0030964 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042180 GO:0042181 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050136 GO:0051186 GO:0051188 GO:0055035 GO:0055114 GO:0071704 GO:0098796 GO:1901576 GO:1901661 GO:1901663 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 map00190 map01100

Pfam Domains

Protein Families

Oxidored_q2

Protein Analysis

101

Amino Acids

11.29

Weight (kDa)

8.74

Isoelectric Point (pI)

24.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_q2	PF00420	5 - 100	1.5e-30	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0023867)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG01070
rosa_chinensis	RchiOBHm_Chr5g0017211 RchiOBHm_CPg0502771

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	213
AcsI	RAATTY	2 cut(s)	130, 180
AcuI	CTGAAG	1 cut(s)	237
AfaI	GTAC	1 cut(s)	18
AflIII	ACRYGT	1 cut(s)	13
AgsI	TTSAA	1 cut(s)	104
AjuI	GAANNNNNNNTTGG	2 cut(s)	210, 242
AluBI	AGCT	2 cut(s)	224, 236
AluI	AGCT	2 cut(s)	224, 236
Alw26I	GTCTC	1 cut(s)	247
AlwNI	CAGNNNCTG	1 cut(s)	215
ApeKI	GCWGC	2 cut(s)	209, 221
ApoI	RAATTY	2 cut(s)	130, 180
BanII	GRGCYC	1 cut(s)	91
BbvI	GCAGC	2 cut(s)	221, 233
BclI	TGATCA	1 cut(s)	63
BcoDI	GTCTC	1 cut(s)	247
BfmI	CTRYAG	1 cut(s)	237
BisI	GCNGC	3 cut(s)	210, 213, 222
BlsI	GCNGC	3 cut(s)	211, 214, 223
BseXI	GCAGC	2 cut(s)	221, 233
BsmAI	GTCTC	1 cut(s)	247
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp143I	GATC	1 cut(s)	63
BspACI	CCGC	1 cut(s)	213
BssMI	GATC	1 cut(s)	63
BstKTI	GATC	1 cut(s)	66
BstMAI	GTCTC	1 cut(s)	247
BstMBI	GATC	1 cut(s)	63
BstMWI	GCNNNNNNNGC	3 cut(s)	209, 218, 221
BstNSI	RCATGY	1 cut(s)	17
BstSFI	CTRYAG	1 cut(s)	237
BstV1I	GCAGC	2 cut(s)	221, 233
CaiI	CAGNNNCTG	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	17
CviAII	CATG	1 cut(s)	14
CviJI	RGCY	4 cut(s)	89, 212, 224, 236
CviKI_1	RGCY	4 cut(s)	89, 212, 224, 236
CviQI	GTAC	1 cut(s)	17
DpnI	GATC	1 cut(s)	65
DpnII	GATC	1 cut(s)	63
Eco24I	GRGCYC	1 cut(s)	91
Eco57I	CTGAAG	1 cut(s)	237
EcoT38I	GRGCYC	1 cut(s)	91
FaeI	CATG	1 cut(s)	17
FaiI	YATR	9 cut(s)	15, 57, 80, 95, 110, 128, 200, 239, 278
FatI	CATG	1 cut(s)	13
FbaI	TGATCA	1 cut(s)	63
Fnu4HI	GCNGC	3 cut(s)	210, 213, 222
FriOI	GRGCYC	1 cut(s)	91
Fsp4HI	GCNGC	3 cut(s)	210, 213, 222
GluI	GCNGC	3 cut(s)	210, 213, 222
Hin1II	CATG	1 cut(s)	17
Hpy188I	TCNGA	1 cut(s)	148
Hpy188III	TCNNGA	1 cut(s)	101
HpyCH4V	TGCA	3 cut(s)	119, 189, 209
HpyF10VI	GCNNNNNNNGC	3 cut(s)	209, 218, 221
Hsp92II	CATG	1 cut(s)	17
Ksp22I	TGATCA	1 cut(s)	63
Kzo9I	GATC	1 cut(s)	63
Lsp1109I	GCAGC	2 cut(s)	221, 233
MaeIII	GTNAC	2 cut(s)	136, 257
MalI	GATC	1 cut(s)	65
MboI	GATC	1 cut(s)	63
MfeI	CAATTG	1 cut(s)	204
MhlI	GDGCHC	1 cut(s)	91
MluCI	AATT	6 cut(s)	130, 160, 180, 204, 249, 270
MseI	TTAA	2 cut(s)	123, 296
MspA1I	CMGCKG	1 cut(s)	215
MunI	CAATTG	1 cut(s)	204
MwoI	GCNNNNNNNGC	3 cut(s)	209, 218, 221
NdeII	GATC	1 cut(s)	63
NlaIII	CATG	1 cut(s)	17
NspI	RCATGY	1 cut(s)	17
PciI	ACATGT	1 cut(s)	13
PkrI	GCNGC	3 cut(s)	211, 214, 223
PscI	ACATGT	1 cut(s)	13
PstNI	CAGNNNCTG	1 cut(s)	215
RsaI	GTAC	1 cut(s)	18
RsaNI	GTAC	1 cut(s)	17
SaqAI	TTAA	2 cut(s)	123, 296
SatI	GCNGC	3 cut(s)	210, 213, 222
Sau3AI	GATC	1 cut(s)	63
SduI	GDGCHC	1 cut(s)	91
SetI	ASST	3 cut(s)	226, 238, 293
SfcI	CTRYAG	1 cut(s)	237
SgeI	CNNG	6 cut(s)	20, 26, 32, 81, 113, 256
Sse9I	AATT	6 cut(s)	130, 160, 180, 204, 249, 270
SsiI	CCGC	1 cut(s)	213
TaqI	TCGA	3 cut(s)	9, 73, 287
TasI	AATT	6 cut(s)	130, 160, 180, 204, 249, 270
TatI	WGTACW	1 cut(s)	16
TauI	GCSGC	1 cut(s)	215
Tru1I	TTAA	2 cut(s)	123, 296
Tru9I	TTAA	2 cut(s)	123, 296
TseI	GCWGC	2 cut(s)	209, 221
TspDTI	ATGAA	1 cut(s)	143
XapI	RAATTY	2 cut(s)	130, 180
XceI	RCATGY	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.