Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0021879

Physical Location & Seq

Genomic Coordinates Reverse (-)

25076 .. 25615

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

ATMG00080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGTATTTAACCATAAAATCGATTATGCTCCTGCGGAAGTATCTACTCGTTACGGAATCTCAGGTGTCAAAGTGTGGATTTCATATAGTCAAAAAAAAGGGAGACGTGCTATATCCGAAACGTACGAAATATAGTAAATATCGTAAAGGCAGATGTAGTAGGGGTTGCAAACCGGATGGTACAAAACTGGGTTTTGGAAGATATGGCACTAAAAGTTGTAAAGCTGGTCGTCTTTCATATCGAGCCATTGAAGCAGCGCGTCGGGCTATAATCGGACACTTTCATCGTGCTATGAGCGGACAATTCCGAAGAAATGGTAAGATATGGGTAAGAGTTTTCGCGGATCTCCCTATTACCGGGAAACCCACAGAAGTAAGAATGGGAAGAGGAAAAGGAAATCCTACGGGTTGGATTGCTCGTGTGTCCACGGGACAAATCCCATTTGAAATGGATGGTGTGAGTTTGGCAAATGCTCGACAAGCCGCTACATTAGCGGCTCATAAACCATGTTCGTCAACCAAGTTTGTTCAGTGGTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0019843 GO:0032543 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0097159 GO:0140053 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L16

Protein Analysis

179

Amino Acids

20.05

Weight (kDa)

10.76

Isoelectric Point (pI)

24.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L16	PF00252	39 - 176	3.9e-36	Ribosomal protein L16p/L10e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0021879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00080
malus_domestica	MD06G1012400.v1.1
pyrus_communis	pycom461g00090
rosa_chinensis	RchiOBHm_MTg0498421

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	297
AccII	CGCG	2 cut(s)	259, 341
AciI	CCGC	5 cut(s)	34, 297, 341, 483, 494
AclWI	GGATC	1 cut(s)	351
AfaI	GTAC	2 cut(s)	124, 181
AfiI	CCNNNNNNNGG	1 cut(s)	356
AgsI	TTSAA	2 cut(s)	251, 446
AjiI	CACGTC	1 cut(s)	106
AluBI	AGCT	1 cut(s)	224
AluI	AGCT	1 cut(s)	224
Alw26I	GTCTC	1 cut(s)	96
AlwI	GGATC	1 cut(s)	351
ApeKI	GCWGC	1 cut(s)	254
AspLEI	GCGC	1 cut(s)	259
AsuC2I	CCSGG	1 cut(s)	358
BauI	CACGAG	1 cut(s)	417
BbvI	GCAGC	1 cut(s)	266
BccI	CCATC	2 cut(s)	170, 446
BcnI	CCSGG	1 cut(s)	358
BcoDI	GTCTC	1 cut(s)	96
BisI	GCNGC	3 cut(s)	255, 483, 495
BlsI	GCNGC	3 cut(s)	256, 484, 496
Bme1390I	CCNGG	1 cut(s)	358
BmgBI	CACGTC	1 cut(s)	106
BmrFI	CCNGG	1 cut(s)	358
BmrI	ACTGGG	1 cut(s)	197
BmuI	ACTGGG	1 cut(s)	197
BpuMI	CCSGG	1 cut(s)	358
Bsa29I	ATCGAT	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	426
BsaWI	WCCGGW	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	1 cut(s)	356
Bse1I	ACTGG	1 cut(s)	192
BseCI	ATCGAT	1 cut(s)	20
BseDI	CCNNGG	1 cut(s)	426
BseGI	GGATG	2 cut(s)	181, 457
BseLI	CCNNNNNNNGG	1 cut(s)	356
BseMII	CTCAG	1 cut(s)	74
BseNI	ACTGG	1 cut(s)	192
BseXI	GCAGC	1 cut(s)	266
Bsh1236I	CGCG	2 cut(s)	259, 341
BshVI	ATCGAT	1 cut(s)	20
BsiSI	CCGG	2 cut(s)	173, 357
BsiWI	CGTACG	1 cut(s)	122
BslFI	GGGAC	1 cut(s)	444
BslI	CCNNNNNNNGG	1 cut(s)	356
BsmAI	GTCTC	1 cut(s)	96
BsmBI	CGTCTC	1 cut(s)	96
BsmFI	GGGAC	1 cut(s)	444
Bsp143I	GATC	1 cut(s)	343
BspACI	CCGC	5 cut(s)	34, 297, 341, 483, 494
BspCNI	CTCAG	1 cut(s)	73
BspDI	ATCGAT	1 cut(s)	20
BspFNI	CGCG	2 cut(s)	259, 341
BspPI	GGATC	1 cut(s)	351
BsrBI	CCGCTC	1 cut(s)	297
BsrI	ACTGG	1 cut(s)	192
BssECI	CCNNGG	1 cut(s)	426
BssMI	GATC	1 cut(s)	343
BssSI	CACGAG	1 cut(s)	417
Bst2BI	CACGAG	1 cut(s)	417
Bst6I	CTCTTC	1 cut(s)	379
BstDEI	CTNAG	1 cut(s)	60
BstDSI	CCRYGG	1 cut(s)	426
BstF5I	GGATG	2 cut(s)	181, 457
BstFNI	CGCG	2 cut(s)	259, 341
BstHHI	GCGC	1 cut(s)	259
BstKTI	GATC	1 cut(s)	346
BstMAI	GTCTC	1 cut(s)	96
BstMBI	GATC	1 cut(s)	343
BstMWI	GCNNNNNNNGC	4 cut(s)	251, 263, 479, 491
BstSCI	CCNGG	1 cut(s)	356
BstUI	CGCG	2 cut(s)	259, 341
BstV1I	GCAGC	1 cut(s)	266
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
Bsu15I	ATCGAT	1 cut(s)	20
BsuTUI	ATCGAT	1 cut(s)	20
BtgI	CCRYGG	1 cut(s)	426
BtrI	CACGTC	1 cut(s)	106
BtsCI	GGATG	2 cut(s)	181, 457
BtsIMutI	CAGTG	1 cut(s)	536
CfoI	GCGC	1 cut(s)	259
ClaI	ATCGAT	1 cut(s)	20
CseI	GACGC	1 cut(s)	248
Csp6I	GTAC	2 cut(s)	123, 180
CviAII	CATG	1 cut(s)	507
CviJI	RGCY	5 cut(s)	224, 245, 266, 482, 497
CviKI_1	RGCY	5 cut(s)	224, 245, 266, 482, 497
CviQI	GTAC	2 cut(s)	123, 180
DdeI	CTNAG	1 cut(s)	60
DpnI	GATC	1 cut(s)	345
DpnII	GATC	1 cut(s)	343
Eam1104I	CTCTTC	1 cut(s)	379
EarI	CTCTTC	1 cut(s)	379
Esp3I	CGTCTC	1 cut(s)	96
FaeI	CATG	1 cut(s)	510
FaqI	GGGAC	1 cut(s)	444
FatI	CATG	1 cut(s)	506
Fnu4HI	GCNGC	3 cut(s)	255, 483, 495
FokI	GGATG	2 cut(s)	188, 464
Fsp4HI	GCNGC	3 cut(s)	255, 483, 495
GlaI	GCGC	1 cut(s)	258
GluI	GCNGC	3 cut(s)	255, 483, 495
HapII	CCGG	2 cut(s)	173, 357
HgaI	GACGC	1 cut(s)	248
HhaI	GCGC	1 cut(s)	259
Hin1II	CATG	1 cut(s)	510
Hin6I	GCGC	1 cut(s)	257
HinP1I	GCGC	1 cut(s)	257
HincII	GTYRAC	1 cut(s)	516
HindII	GTYRAC	1 cut(s)	516
HinfI	GANTC	1 cut(s)	56
HpaII	CCGG	2 cut(s)	173, 357
Hpy166II	GTNNAC	2 cut(s)	426, 516
Hpy188I	TCNGA	3 cut(s)	117, 275, 308
Hpy8I	GTNNAC	2 cut(s)	426, 516
Hpy99I	CGWCG	1 cut(s)	264
HpyCH4IV	ACGT	2 cut(s)	105, 121
HpyCH4V	TGCA	1 cut(s)	168
HpyF10VI	GCNNNNNNNGC	4 cut(s)	251, 263, 479, 491
HpyF3I	CTNAG	1 cut(s)	60
HpySE526I	ACGT	2 cut(s)	105, 121
Hsp92II	CATG	1 cut(s)	510
HspAI	GCGC	1 cut(s)	257
Kzo9I	GATC	1 cut(s)	343
LmnI	GCTCC	1 cut(s)	33
LpnPI	CCDG	6 cut(s)	44, 47, 173, 186, 210, 370
Lsp1109I	GCAGC	1 cut(s)	266
MaeII	ACGT	2 cut(s)	105, 121
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	1 cut(s)	345
MbiI	CCGCTC	1 cut(s)	297
MboI	GATC	1 cut(s)	343
MboII	GAAGA	3 cut(s)	210, 321, 396
MflI	RGATCY	1 cut(s)	343
MluCI	AATT	1 cut(s)	302
MmeI	TCCRAC	1 cut(s)	389
MnlI	CCTC	1 cut(s)	380
MseI	TTAA	1 cut(s)	8
MspI	CCGG	2 cut(s)	173, 357
MspR9I	CCNGG	1 cut(s)	358
MvnI	CGCG	2 cut(s)	259, 341
MwoI	GCNNNNNNNGC	4 cut(s)	251, 263, 479, 491
NciI	CCSGG	1 cut(s)	358
NdeII	GATC	1 cut(s)	343
NlaIII	CATG	1 cut(s)	510
PfeI	GAWTC	1 cut(s)	56
Pfl23II	CGTACG	1 cut(s)	122
PkrI	GCNGC	3 cut(s)	256, 484, 496
PspLI	CGTACG	1 cut(s)	122
PsuI	RGATCY	1 cut(s)	343
RsaI	GTAC	2 cut(s)	124, 181
RsaNI	GTAC	2 cut(s)	123, 180
SaqAI	TTAA	1 cut(s)	8
SatI	GCNGC	3 cut(s)	255, 483, 495
Sau3AI	GATC	1 cut(s)	343
ScrFI	CCNGG	1 cut(s)	358
SetI	ASST	4 cut(s)	66, 108, 124, 226
Sse9I	AATT	1 cut(s)	302
SsiI	CCGC	5 cut(s)	34, 297, 341, 483, 494
StyD4I	CCNGG	1 cut(s)	356
TaiI	ACGT	2 cut(s)	108, 124
TaqI	TCGA	3 cut(s)	20, 241, 475
TasI	AATT	1 cut(s)	302
TauI	GCSGC	2 cut(s)	485, 497
TfiI	GAWTC	1 cut(s)	56
Tru1I	TTAA	1 cut(s)	8
Tru9I	TTAA	1 cut(s)	8
TscAI	CASTG	1 cut(s)	536
TseI	GCWGC	1 cut(s)	254
TspDTI	ATGAA	3 cut(s)	71, 225, 272
TspGWI	ACGGA	1 cut(s)	68
TspRI	CASTG	1 cut(s)	536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.