RCHIOBHM_MTG0498421

RIBOSOMAL protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
Mt
OG0021879
Physical Location & Seq
Forward (+)
76904 .. 77633
730 bp
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UTR
Exon/CDS
Intron
PRQ15613

Sequence Viewer

Length: 198 bp
ATGAGCCGAAGAAATCGTAAGATATGGGTAAGAGTTTTCGCAGATCTCCCTATTACCGGGAAACCTACAGAAGTAAGAATGGGAAGAGGAAAAGGAAATCCTACGGGTTGGATTGCTCGTGTGTCCACGGCATTTGAAATGGATGGTGTGAGTTTGTCAAATGCTCGCCAAGCCGCTACATTAGCGGCGCATAAATAA

Protein Analysis

65

Amino Acids

7.17

Weight (kDa)

11.79

Isoelectric Point (pI)

28.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L16 PF00252 3 - 65 8e-17 Ribosomal protein L16p/L10e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021879)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00080
malus_domestica MD06G1012400.v1.1
pyrus_communis pycom461g00090
rosa_chinensis RchiOBHm_MTg0498421

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 174, 185
AfiI CCNNNNNNNGG 1 cut(s) 56
AgsI TTSAA 1 cut(s) 137
AspLEI GCGC 1 cut(s) 190
AsuC2I CCSGG 1 cut(s) 58
BauI CACGAG 1 cut(s) 117
BccI CCATC 1 cut(s) 137
BceAI ACGGC 1 cut(s) 144
BcnI CCSGG 1 cut(s) 58
BfmI CTRYAG 1 cut(s) 66
BglII AGATCT 1 cut(s) 43
BisI GCNGC 2 cut(s) 174, 186
BlsI GCNGC 2 cut(s) 175, 187
Bme1390I CCNGG 1 cut(s) 58
BmrFI CCNGG 1 cut(s) 58
BpuMI CCSGG 1 cut(s) 58
BsaJI CCNNGG 1 cut(s) 126
Bsc4I CCNNNNNNNGG 1 cut(s) 56
BseDI CCNNGG 1 cut(s) 126
BseGI GGATG 1 cut(s) 148
BseLI CCNNNNNNNGG 1 cut(s) 56
BsiSI CCGG 1 cut(s) 57
BslI CCNNNNNNNGG 1 cut(s) 56
Bsp143I GATC 1 cut(s) 43
BspACI CCGC 2 cut(s) 174, 185
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 1 cut(s) 43
BssSI CACGAG 1 cut(s) 117
Bst2BI CACGAG 1 cut(s) 117
Bst6I CTCTTC 1 cut(s) 79
BstC8I GCNNGC 1 cut(s) 166
BstDSI CCRYGG 1 cut(s) 126
BstF5I GGATG 1 cut(s) 148
BstHHI GCGC 1 cut(s) 190
BstKTI GATC 1 cut(s) 46
BstMBI GATC 1 cut(s) 43
BstMWI GCNNNNNNNGC 2 cut(s) 170, 182
BstSCI CCNGG 1 cut(s) 56
BstSFI CTRYAG 1 cut(s) 66
BstX2I RGATCY 1 cut(s) 43
BstYI RGATCY 1 cut(s) 43
BtgI CCRYGG 1 cut(s) 126
BtsCI GGATG 1 cut(s) 148
Cac8I GCNNGC 1 cut(s) 166
CfoI GCGC 1 cut(s) 190
CspCI CAANNNNNGTGG 2 cut(s) 115, 150
CviJI RGCY 2 cut(s) 6, 173
CviKI_1 RGCY 2 cut(s) 6, 173
DpnI GATC 1 cut(s) 45
DpnII GATC 1 cut(s) 43
Eam1104I CTCTTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 79
FaiI YATR 2 cut(s) 25, 192
Fnu4HI GCNGC 2 cut(s) 174, 186
FokI GGATG 1 cut(s) 155
Fsp4HI GCNGC 2 cut(s) 174, 186
GlaI GCGC 1 cut(s) 189
GluI GCNGC 2 cut(s) 174, 186
HapII CCGG 1 cut(s) 57
HhaI GCGC 1 cut(s) 190
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HpaII CCGG 1 cut(s) 57
Hpy166II GTNNAC 1 cut(s) 126
Hpy8I GTNNAC 1 cut(s) 126
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 182
HspAI GCGC 1 cut(s) 188
Kzo9I GATC 1 cut(s) 43
LpnPI CCDG 1 cut(s) 70
MalI GATC 1 cut(s) 45
MboI GATC 1 cut(s) 43
MboII GAAGA 2 cut(s) 21, 96
MflI RGATCY 1 cut(s) 43
MmeI TCCRAC 1 cut(s) 89
MnlI CCTC 1 cut(s) 80
MspI CCGG 1 cut(s) 57
MspR9I CCNGG 1 cut(s) 58
MwoI GCNNNNNNNGC 2 cut(s) 170, 182
NciI CCSGG 1 cut(s) 58
NdeII GATC 1 cut(s) 43
PkrI GCNGC 2 cut(s) 175, 187
PsuI RGATCY 1 cut(s) 43
SatI GCNGC 2 cut(s) 174, 186
Sau3AI GATC 1 cut(s) 43
ScrFI CCNGG 1 cut(s) 58
SetI ASST 1 cut(s) 67
SfcI CTRYAG 1 cut(s) 66
SgeI CNNG 8 cut(s) 69, 70, 117, 129, 131, 139, 177, 182
SsiI CCGC 2 cut(s) 174, 185
StyD4I CCNGG 1 cut(s) 56
TauI GCSGC 2 cut(s) 176, 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.