ATMG00650

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
Mt
OG0027568
Physical Location & Seq
Reverse (-)
188929 .. 189231
303 bp
Loading structure...
UTR
Exon/CDS
Intron
ATMG00650.1

Sequence Viewer

Length: 303 bp
ATGGATCTTATCAAATATTTCACATTTTCTATGATTATTTCTATTTTAGGTATTCGGGGAATCCTCCTTAATAGACGAAATATTCCTATTATGTCAATGCCAATTGAATCAATGTTATTAGCTGTGAATTCGAACTTTTTGGTATTTTCCGTTTCTTCGGATGATATGATGGGTCAAGTATTTGCTTCATTGGTTCCAACGGTGGCAGCTGCGGAATCCGCTATTGGGTTAGCCATTTTCGTTATAACTTTCCGAGTCCGAGGTACTATTGCTGTAGAATTTATTAATAGCATTCAAGGTTAA

Protein Analysis

100

Amino Acids

10.92

Weight (kDa)

6.06

Isoelectric Point (pI)

40.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oxidored_q2 PF00420 6 - 99 1.2e-18 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0027568)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00650
rosa_chinensis RchiOBHm_MTg0498341

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 245
AciI CCGC 2 cut(s) 212, 219
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 2 cut(s) 127, 278
AfaI GTAC 1 cut(s) 265
AfiI CCNNNNNNNGG 1 cut(s) 225
AgsI TTSAA 2 cut(s) 107, 296
AjuI GAANNNNNNNTTGG 2 cut(s) 207, 239
AluBI AGCT 2 cut(s) 122, 209
AluI AGCT 2 cut(s) 122, 209
AlwI GGATC 1 cut(s) 12
ApeKI GCWGC 2 cut(s) 206, 209
ApoI RAATTY 2 cut(s) 127, 278
AseI ATTAAT 1 cut(s) 285
AsuII TTCGAA 1 cut(s) 131
BbvI GCAGC 2 cut(s) 196, 218
BccI CCATC 1 cut(s) 163
BfmI CTRYAG 1 cut(s) 273
BisI GCNGC 2 cut(s) 207, 210
BlsI GCNGC 2 cut(s) 208, 211
BmiI GGNNCC 1 cut(s) 195
Bpu14I TTCGAA 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 259
Bsc4I CCNNNNNNNGG 1 cut(s) 225
BseDI CCNNGG 1 cut(s) 259
BseGI GGATG 1 cut(s) 166
BseLI CCNNNNNNNGG 1 cut(s) 225
BseXI GCAGC 2 cut(s) 196, 218
BslI CCNNNNNNNGG 1 cut(s) 225
BsmI GAATGC 1 cut(s) 291
Bsp119I TTCGAA 1 cut(s) 131
Bsp143I GATC 1 cut(s) 4
BspACI CCGC 2 cut(s) 212, 219
BspLI GGNNCC 1 cut(s) 195
BspPI GGATC 1 cut(s) 12
BspT104I TTCGAA 1 cut(s) 131
BssECI CCNNGG 1 cut(s) 259
BssMI GATC 1 cut(s) 4
Bst4CI ACNGT 1 cut(s) 202
BstBI TTCGAA 1 cut(s) 131
BstF5I GGATG 1 cut(s) 166
BstKTI GATC 1 cut(s) 7
BstMBI GATC 1 cut(s) 4
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstSFI CTRYAG 1 cut(s) 273
BstV1I GCAGC 2 cut(s) 196, 218
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BtsCI GGATG 1 cut(s) 166
Csp6I GTAC 1 cut(s) 264
CviJI RGCY 3 cut(s) 122, 209, 233
CviKI_1 RGCY 3 cut(s) 122, 209, 233
CviQI GTAC 1 cut(s) 264
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
EcoRI GAATTC 1 cut(s) 127
FaiI YATR 4 cut(s) 32, 92, 167, 245
Fnu4HI GCNGC 2 cut(s) 207, 210
FokI GGATG 1 cut(s) 173
Fsp4HI GCNGC 2 cut(s) 207, 210
GluI GCNGC 2 cut(s) 207, 210
HinfI GANTC 4 cut(s) 60, 107, 215, 255
Hpy188I TCNGA 3 cut(s) 160, 254, 260
HpyCH4III ACNGT 1 cut(s) 202
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
Kzo9I GATC 1 cut(s) 4
Lsp1109I GCAGC 2 cut(s) 196, 218
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 1 cut(s) 147
MfeI CAATTG 1 cut(s) 102
MflI RGATCY 1 cut(s) 4
MluCI AATT 3 cut(s) 102, 127, 278
MlyI GAGTC 1 cut(s) 264
MmeI TCCRAC 1 cut(s) 221
MnlI CCTC 2 cut(s) 74, 254
MseI TTAA 3 cut(s) 69, 285, 301
MspA1I CMGCKG 1 cut(s) 209
MunI CAATTG 1 cut(s) 102
Mva1269I GAATGC 1 cut(s) 291
MwoI GCNNNNNNNGC 1 cut(s) 218
NdeII GATC 1 cut(s) 4
NlaIV GGNNCC 1 cut(s) 195
NspV TTCGAA 1 cut(s) 131
PctI GAATGC 1 cut(s) 291
PfeI GAWTC 3 cut(s) 60, 107, 215
PkrI GCNGC 2 cut(s) 208, 211
PleI GAGTC 1 cut(s) 263
PpsI GAGTC 1 cut(s) 263
PshBI ATTAAT 1 cut(s) 285
PsiI TTATAA 1 cut(s) 245
PspN4I GGNNCC 1 cut(s) 195
PsuI RGATCY 1 cut(s) 4
PvuII CAGCTG 1 cut(s) 209
RsaI GTAC 1 cut(s) 265
RsaNI GTAC 1 cut(s) 264
SaqAI TTAA 3 cut(s) 69, 285, 301
SatI GCNGC 2 cut(s) 207, 210
Sau3AI GATC 1 cut(s) 4
SchI GAGTC 1 cut(s) 264
SetI ASST 5 cut(s) 52, 124, 211, 265, 301
SfcI CTRYAG 1 cut(s) 273
SfuI TTCGAA 1 cut(s) 131
SgeI CNNG 4 cut(s) 68, 188, 266, 272
Sse9I AATT 3 cut(s) 102, 127, 278
SsiI CCGC 2 cut(s) 212, 219
SspI AATATT 2 cut(s) 17, 82
TaaI ACNGT 1 cut(s) 202
TaqI TCGA 1 cut(s) 131
TasI AATT 3 cut(s) 102, 127, 278
TfiI GAWTC 3 cut(s) 60, 107, 215
Tru1I TTAA 3 cut(s) 69, 285, 301
Tru9I TTAA 3 cut(s) 69, 285, 301
TseI GCWGC 2 cut(s) 206, 209
TspDTI ATGAA 1 cut(s) 177
TspGWI ACGGA 1 cut(s) 139
VspI ATTAAT 1 cut(s) 285
XapI RAATTY 2 cut(s) 127, 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.