ATMG00830

cytochrome c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
Mt
OG0019579
Physical Location & Seq
Reverse (-)
231894 .. 233042
1149 bp
Loading structure...
UTR
Exon/CDS
Intron
ATMG00830.1

Sequence Viewer

Length: 1149 bp
ATGTCAATATCAATATATGAATTCTTTCATTATTCGTTATTTCCGGGTCTTTTCGTTGCATTCACTTACAACAAGAAACAACCACCAGCGTTTGGTGCAGCACCTGCATTTTGGTGCATTCTTCTTTCTTTCCTTGGTCTTTCGTTCTGTCATATTCCTAATAACTTATCCAATTACAACGTATTAACCGCTAATGCACCTTTCTTTTATCAAATCTCAGGAACATGGTCTAATCATGAGGGTAGTATTTTATTATGGTGTCGGATCCCAAATTTTTATGGATTTTTTCTTTGTTACCGGGGTCGACCCCAGAGCCATAATGTCTTAAAACAAGGAGGCCATAGGGAAAGTCTTTTTTTTTTTTTTGTCTCGAACTTCGTGAAGAACTCAATTTTATCTCTCCCTCGTTACGAACAAGAAAGTGGTTTGAAAAACCAGTTGTACACTCCCTTCGTTCTACGAACCCTTGTTGATTCTGAACTTCGTTCGCGAAGGAACCGGACTTTTGACGGACCAGCCCTTTTTTATGCGCCGCTTTATCCTGAAAGGAAAATTAAAAATCCTCTGGACGCTTGGCGCTCCCGTGGTTCGCGAGAAGGAAAAAGGACTCATCCTTTGTTGCATCTGGCACGAGATGATAAAGAGAGAGCTTCGTCTATCGATGAACAGCGAATTGACGGAGCTCTTGGCATTGCTTTGTTTTTCTCTCCTTTCCTATCAGCGAGTTCCGATCCTTTTGTTCGAAATTTCTTTGTTTGTACCGAACCGCTTGCAGAATCAAATCCTGTTCCACAAGATCCTATATCAGCTATACATCCTCCTTGCATTTATGCCGGGGACGTCGCCAGTGCGGAGGGCTTTGGCTTATGTAGATCAAAAATGATGAATGGGATTGTGGCACTCCACTCGCCGCCAATGCGGAAGGATGCCGCCGAAAAGAATGGAACGCTGCTTCGCTCTGCTGGATGCGTCGGATCCCGTATAACAAGCGAGCTTTTTACCCTAAAATTCAAACATGTGGGCGCAAAATGCTATCCTGCTCTATTGTTACGTAGCAATAGAAGCCCGCTCATGCTGCTTCGGCGGCGCTTTTTCGCCTTCTCTTCGTTCTGGGCAGGAGCGAGAAGCCACTCGACTAAAAGGTACTGA

Protein Analysis

382

Amino Acids

43.34

Weight (kDa)

9.77

Isoelectric Point (pI)

58.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019579)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00830
malus_domestica MD14G1092300.v1.1
pyrus_communis pycom12401g00280
rosa_laevigata RLG00000000135 RLG00000000147 RLG00000000477 RLG00000000492

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 112
AatII GACGTC 1 cut(s) 843
Acc36I ACCTGC 1 cut(s) 112
AccB7I CCANNNNNTGG 1 cut(s) 92
AccBSI CCGCTC 1 cut(s) 1069
AccI GTMKAC 1 cut(s) 304
AccII CGCG 2 cut(s) 490, 592
AciI CCGC 9 cut(s) 189, 533, 767, 851, 911, 919, 930, 1067, 1084
AclWI GGATC 6 cut(s) 259, 272, 725, 791, 969, 982
AcsI RAATTY 4 cut(s) 20, 271, 745, 1007
AcyI GRCGYC 1 cut(s) 840
AfaI GTAC 3 cut(s) 443, 760, 1145
AfiI CCNNNNNNNGG 1 cut(s) 92
AflIII ACRYGT 1 cut(s) 1015
AgsI TTSAA 2 cut(s) 430, 1012
AluBI AGCT 4 cut(s) 650, 683, 809, 994
AluI AGCT 4 cut(s) 650, 683, 809, 994
Alw21I GWGCWC 1 cut(s) 685
Alw26I GTCTC 1 cut(s) 373
AlwI GGATC 6 cut(s) 259, 272, 725, 791, 969, 982
AlwNI CAGNNNCTG 1 cut(s) 104
AoxI GGCC 1 cut(s) 337
ApeKI GCWGC 3 cut(s) 98, 949, 1075
ApoI RAATTY 4 cut(s) 20, 271, 745, 1007
ArsI GACNNNNNNTTYG 2 cut(s) 598, 630
Asp700I GAANNNNTTC 1 cut(s) 24
AspLEI GCGC 4 cut(s) 532, 579, 1025, 1089
AspS9I GGNCC 1 cut(s) 512
AsuC2I CCSGG 3 cut(s) 45, 299, 835
AsuII TTCGAA 1 cut(s) 742
AvaII GGWCC 1 cut(s) 512
BamHI GGATCC 2 cut(s) 264, 974
BanII GRGCYC 1 cut(s) 685
BarI GAAGNNNNNNTAC 2 cut(s) 434, 466
BauI CACGAG 1 cut(s) 630
Bbv12I GWGCWC 1 cut(s) 685
BbvI GCAGC 3 cut(s) 110, 936, 1062
BcgI CGANNNNNNTGC 4 cut(s) 752, 786, 888, 922
BcnI CCSGG 3 cut(s) 45, 299, 835
BcoDI GTCTC 1 cut(s) 373
BfoI RGCGCY 2 cut(s) 580, 1090
BfuAI ACCTGC 1 cut(s) 112
BisI GCNGC 7 cut(s) 99, 533, 911, 930, 950, 1076, 1085
BlsI GCNGC 7 cut(s) 100, 534, 912, 931, 951, 1077, 1086
Bme1390I CCNGG 3 cut(s) 45, 299, 835
Bme18I GGWCC 1 cut(s) 512
BmgT120I GGNCC 1 cut(s) 512
BmiI GGNNCC 3 cut(s) 266, 497, 976
BmrFI CCNGG 3 cut(s) 45, 299, 835
BmsI GCATC 3 cut(s) 631, 916, 956
Bpu14I TTCGAA 1 cut(s) 742
BpuMI CCSGG 3 cut(s) 45, 299, 835
Bsa29I ATCGAT 1 cut(s) 660
BsaAI YACGTR 1 cut(s) 1052
BsaHI GRCGYC 1 cut(s) 840
BsaJI CCNNGG 4 cut(s) 133, 298, 583, 834
BsaWI WCCGGW 1 cut(s) 498
Bsc4I CCNNNNNNNGG 1 cut(s) 92
Bse1I ACTGG 2 cut(s) 436, 846
Bse3DI GCAATG 1 cut(s) 690
BseCI ATCGAT 1 cut(s) 660
BseDI CCNNGG 4 cut(s) 133, 298, 583, 834
BseGI GGATG 4 cut(s) 610, 814, 931, 971
BseLI CCNNNNNNNGG 1 cut(s) 92
BseMI GCAATG 1 cut(s) 690
BseMII CTCAG 1 cut(s) 231
BseNI ACTGG 2 cut(s) 436, 846
BseXI GCAGC 3 cut(s) 110, 936, 1062
BsgI GTGCAG 1 cut(s) 117
Bsh1236I CGCG 2 cut(s) 490, 592
BshFI GGCC 1 cut(s) 339
BshVI ATCGAT 1 cut(s) 660
BsiHKAI GWGCWC 1 cut(s) 685
BsiSI CCGG 4 cut(s) 44, 298, 499, 834
BslFI GGGAC 1 cut(s) 851
BslI CCNNNNNNNGG 1 cut(s) 92
BsmAI GTCTC 1 cut(s) 373
BsmFI GGGAC 1 cut(s) 851
BsmI GAATGC 2 cut(s) 59, 117
BsnI GGCC 1 cut(s) 339
Bsp119I TTCGAA 1 cut(s) 742
Bsp1286I GDGCHC 1 cut(s) 685
Bsp1407I TGTACA 1 cut(s) 441
Bsp143I GATC 5 cut(s) 264, 730, 796, 872, 974
Bsp68I TCGCGA 2 cut(s) 490, 592
BspACI CCGC 9 cut(s) 189, 533, 767, 851, 911, 919, 930, 1067, 1084
BspANI GGCC 1 cut(s) 339
BspCNI CTCAG 1 cut(s) 230
BspDI ATCGAT 1 cut(s) 660
BspFNI CGCG 2 cut(s) 490, 592
BspHI TCATGA 1 cut(s) 235
BspLI GGNNCC 3 cut(s) 266, 497, 976
BspMI ACCTGC 1 cut(s) 112
BspPI GGATC 6 cut(s) 259, 272, 725, 791, 969, 982
BspT104I TTCGAA 1 cut(s) 742
BsrBI CCGCTC 1 cut(s) 1069
BsrDI GCAATG 1 cut(s) 690
BsrGI TGTACA 1 cut(s) 441
BsrI ACTGG 2 cut(s) 436, 846
BssECI CCNNGG 4 cut(s) 133, 298, 583, 834
BssMI GATC 5 cut(s) 264, 730, 796, 872, 974
BssNI GRCGYC 1 cut(s) 840
BssSI CACGAG 1 cut(s) 630
BssT1I CCWWGG 1 cut(s) 133
Bst2BI CACGAG 1 cut(s) 630
Bst6I CTCTTC 1 cut(s) 1108
BstACI GRCGYC 1 cut(s) 840
BstAPI GCANNNNNTGC 1 cut(s) 104
BstAUI TGTACA 1 cut(s) 441
BstBAI YACGTR 1 cut(s) 1052
BstBI TTCGAA 1 cut(s) 742
BstC8I GCNNGC 3 cut(s) 771, 992, 1067
BstDEI CTNAG 1 cut(s) 217
BstDSI CCRYGG 1 cut(s) 583
BstF5I GGATG 4 cut(s) 610, 814, 931, 971
BstFNI CGCG 2 cut(s) 490, 592
BstH2I RGCGCY 2 cut(s) 580, 1090
BstHHI GCGC 4 cut(s) 532, 579, 1025, 1089
BstKTI GATC 5 cut(s) 267, 733, 799, 875, 977
BstMAI GTCTC 1 cut(s) 373
BstMBI GATC 5 cut(s) 264, 730, 796, 872, 974
BstMWI GCNNNNNNNGC 8 cut(s) 95, 104, 916, 1029, 1062, 1075, 1081, 1084
BstNSI RCATGY 1 cut(s) 1019
BstSCI CCNGG 3 cut(s) 43, 297, 833
BstSNI TACGTA 1 cut(s) 1052
BstUI CGCG 2 cut(s) 490, 592
BstV1I GCAGC 3 cut(s) 110, 936, 1062
BstX2I RGATCY 3 cut(s) 264, 796, 974
BstYI RGATCY 3 cut(s) 264, 796, 974
Bsu15I ATCGAT 1 cut(s) 660
BsuRI GGCC 1 cut(s) 339
BsuTUI ATCGAT 1 cut(s) 660
BtgI CCRYGG 1 cut(s) 583
BtsCI GGATG 4 cut(s) 610, 814, 931, 971
BtsIMutI CAGTG 1 cut(s) 853
BtuMI TCGCGA 2 cut(s) 490, 592
BveI ACCTGC 1 cut(s) 112
Cac8I GCNNGC 3 cut(s) 771, 992, 1067
CaiI CAGNNNCTG 1 cut(s) 104
CciI TCATGA 1 cut(s) 235
CfoI GCGC 4 cut(s) 532, 579, 1025, 1089
Cfr13I GGNCC 1 cut(s) 512
ClaI ATCGAT 1 cut(s) 660
CseI GACGC 2 cut(s) 578, 958
Csp6I GTAC 3 cut(s) 442, 759, 1144
CviAII CATG 4 cut(s) 225, 236, 1016, 1072
CviQI GTAC 3 cut(s) 442, 759, 1144
DdeI CTNAG 1 cut(s) 217
DpnI GATC 5 cut(s) 266, 732, 798, 874, 976
DpnII GATC 5 cut(s) 264, 730, 796, 872, 974
Eam1104I CTCTTC 1 cut(s) 1108
EarI CTCTTC 1 cut(s) 1108
Ecl136II GAGCTC 1 cut(s) 683
Eco105I TACGTA 1 cut(s) 1052
Eco130I CCWWGG 1 cut(s) 133
Eco24I GRGCYC 1 cut(s) 685
Eco47I GGWCC 1 cut(s) 512
Eco53kI GAGCTC 1 cut(s) 683
EcoICRI GAGCTC 1 cut(s) 683
EcoRI GAATTC 1 cut(s) 20
EcoT14I CCWWGG 1 cut(s) 133
EcoT38I GRGCYC 1 cut(s) 685
ErhI CCWWGG 1 cut(s) 133
FaeI CATG 4 cut(s) 228, 239, 1019, 1075
FaqI GGGAC 1 cut(s) 851
FatI CATG 4 cut(s) 224, 235, 1015, 1071
FauI CCCGC 1 cut(s) 1074
FblI GTMKAC 1 cut(s) 304
Fnu4HI GCNGC 7 cut(s) 99, 533, 911, 930, 950, 1076, 1085
FokI GGATG 4 cut(s) 597, 801, 938, 978
FriOI GRGCYC 1 cut(s) 685
Fsp4HI GCNGC 7 cut(s) 99, 533, 911, 930, 950, 1076, 1085
GlaI GCGC 4 cut(s) 531, 578, 1024, 1088
GluI GCNGC 7 cut(s) 99, 533, 911, 930, 950, 1076, 1085
HaeII RGCGCY 2 cut(s) 580, 1090
HaeIII GGCC 1 cut(s) 339
HapII CCGG 4 cut(s) 44, 298, 499, 834
HgaI GACGC 2 cut(s) 578, 958
HhaI GCGC 4 cut(s) 532, 579, 1025, 1089
Hin1I GRCGYC 1 cut(s) 840
Hin1II CATG 4 cut(s) 228, 239, 1019, 1075
Hin6I GCGC 4 cut(s) 530, 577, 1023, 1087
HinP1I GCGC 4 cut(s) 530, 577, 1023, 1087
HincII GTYRAC 1 cut(s) 305
HindII GTYRAC 1 cut(s) 305
HinfI GANTC 3 cut(s) 473, 607, 776
HpaII CCGG 4 cut(s) 44, 298, 499, 834
Hpy166II GTNNAC 2 cut(s) 305, 444
Hpy188I TCNGA 4 cut(s) 264, 478, 730, 974
Hpy188III TCNNGA 8 cut(s) 219, 236, 370, 379, 489, 542, 566, 591
Hpy8I GTNNAC 2 cut(s) 305, 444
Hpy99I CGWCG 2 cut(s) 845, 974
HpyAV CCTTC 5 cut(s) 460, 486, 590, 916, 1108
HpyCH4IV ACGT 3 cut(s) 180, 840, 1051
HpyCH4V TGCA 8 cut(s) 59, 98, 107, 117, 197, 622, 773, 825
HpyF10VI GCNNNNNNNGC 8 cut(s) 95, 104, 916, 1029, 1062, 1075, 1081, 1084
HpyF3I CTNAG 1 cut(s) 217
HpySE526I ACGT 3 cut(s) 180, 840, 1051
Hsp92I GRCGYC 1 cut(s) 840
Hsp92II CATG 4 cut(s) 228, 239, 1019, 1075
HspAI GCGC 4 cut(s) 530, 577, 1023, 1087
Kzo9I GATC 5 cut(s) 264, 730, 796, 872, 974
LmnI GCTCC 3 cut(s) 584, 680, 1118
Lsp1109I GCAGC 3 cut(s) 110, 936, 1062
LweI GCATC 3 cut(s) 631, 916, 956
MaeII ACGT 3 cut(s) 180, 840, 1051
MaeIII GTNAC 3 cut(s) 293, 407, 1047
MalI GATC 5 cut(s) 266, 732, 798, 874, 976
MbiI CCGCTC 1 cut(s) 1069
MboI GATC 5 cut(s) 264, 730, 796, 872, 974
MboII GAAGA 3 cut(s) 113, 394, 1095
MflI RGATCY 3 cut(s) 264, 796, 974
MhlI GDGCHC 1 cut(s) 685
MluCI AATT 8 cut(s) 20, 172, 271, 390, 552, 672, 745, 1007
MlyI GAGTC 1 cut(s) 601
MmeI TCCRAC 2 cut(s) 242, 952
MnlI CCTC 6 cut(s) 232, 329, 414, 573, 828, 847
MroXI GAANNNNTTC 1 cut(s) 24
MseI TTAA 3 cut(s) 185, 326, 555
MslI CAYNNNNRTG 1 cut(s) 112
MspI CCGG 4 cut(s) 44, 298, 499, 834
MspR9I CCNGG 3 cut(s) 45, 299, 835
Mva1269I GAATGC 2 cut(s) 59, 117
MvnI CGCG 2 cut(s) 490, 592
MwoI GCNNNNNNNGC 8 cut(s) 95, 104, 916, 1029, 1062, 1075, 1081, 1084
NciI CCSGG 3 cut(s) 45, 299, 835
NdeII GATC 5 cut(s) 264, 730, 796, 872, 974
NlaIII CATG 4 cut(s) 228, 239, 1019, 1075
NlaIV GGNNCC 3 cut(s) 266, 497, 976
NruI TCGCGA 2 cut(s) 490, 592
NspI RCATGY 1 cut(s) 1019
NspV TTCGAA 1 cut(s) 742
PagI TCATGA 1 cut(s) 235
PaqCI CACCTGC 1 cut(s) 112
PciI ACATGT 1 cut(s) 1015
PctI GAATGC 2 cut(s) 59, 117
PdmI GAANNNNTTC 1 cut(s) 24
PfeI GAWTC 2 cut(s) 473, 776
PflMI CCANNNNNTGG 1 cut(s) 92
PkrI GCNGC 7 cut(s) 100, 534, 912, 931, 951, 1077, 1086
PleI GAGTC 1 cut(s) 601
PpsI GAGTC 1 cut(s) 601
Ppu21I YACGTR 1 cut(s) 1052
PscI ACATGT 1 cut(s) 1015
Psp124BI GAGCTC 1 cut(s) 685
PspN4I GGNNCC 3 cut(s) 266, 497, 976
PspPI GGNCC 1 cut(s) 512
PstNI CAGNNNCTG 1 cut(s) 104
PsuI RGATCY 3 cut(s) 264, 796, 974
RruI TCGCGA 2 cut(s) 490, 592
RsaI GTAC 3 cut(s) 443, 760, 1145
RsaNI GTAC 3 cut(s) 442, 759, 1144
RseI CAYNNNNRTG 1 cut(s) 112
SacI GAGCTC 1 cut(s) 685
SalI GTCGAC 1 cut(s) 303
SaqAI TTAA 3 cut(s) 185, 326, 555
SatI GCNGC 7 cut(s) 99, 533, 911, 930, 950, 1076, 1085
Sau3AI GATC 5 cut(s) 264, 730, 796, 872, 974
Sau96I GGNCC 1 cut(s) 512
SchI GAGTC 1 cut(s) 601
ScrFI CCNGG 3 cut(s) 45, 299, 835
SduI GDGCHC 1 cut(s) 685
SfaNI GCATC 3 cut(s) 631, 916, 956
SfuI TTCGAA 1 cut(s) 742
SinI GGWCC 1 cut(s) 512
SmiMI CAYNNNNRTG 1 cut(s) 112
SnaBI TACGTA 1 cut(s) 1052
Sse9I AATT 8 cut(s) 20, 172, 271, 390, 552, 672, 745, 1007
SsiI CCGC 9 cut(s) 189, 533, 767, 851, 911, 919, 930, 1067, 1084
SstI GAGCTC 1 cut(s) 685
StyD4I CCNGG 3 cut(s) 43, 297, 833
StyI CCWWGG 1 cut(s) 133
TaiI ACGT 3 cut(s) 183, 843, 1054
TaqI TCGA 5 cut(s) 304, 371, 660, 742, 1133
TasI AATT 8 cut(s) 20, 172, 271, 390, 552, 672, 745, 1007
TatI WGTACW 1 cut(s) 441
TauI GCSGC 4 cut(s) 535, 913, 932, 1087
TfiI GAWTC 2 cut(s) 473, 776
Tru1I TTAA 3 cut(s) 185, 326, 555
Tru9I TTAA 3 cut(s) 185, 326, 555
TscAI CASTG 1 cut(s) 853
TseI GCWGC 3 cut(s) 98, 949, 1075
TspDTI ATGAA 4 cut(s) 17, 33, 678, 899
TspGWI ACGGA 2 cut(s) 525, 693
TspRI CASTG 1 cut(s) 853
Van91I CCANNNNNTGG 1 cut(s) 92
VpaK11BI GGWCC 1 cut(s) 512
XapI RAATTY 4 cut(s) 20, 271, 745, 1007
XceI RCATGY 1 cut(s) 1019
XmiI GTMKAC 1 cut(s) 304
XmnI GAANNNNTTC 1 cut(s) 24
ZraI GACGTC 1 cut(s) 841
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.