Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0022130

Physical Location & Seq

Genomic Coordinates Forward (+)

1304745 .. 1306084

Gene Structure 1340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g02380.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGCCGTGGCAGAGGATTGAAACGGGTCACCAGGATGTTGTCCATGATGTAGCCATGGATTACTATGGAAAGCGTCTAGCATCGGCTTCATCAGATTCCACTATTAAGATAATTGGTGTCGGCAGTAATGCGGTTTCACAGCACCTTGCTACGTTGTCAGGTCACAGAGGTCCTGTTTGGCAGGTGGGTTGGGACTTGGGCGCATCCCAAGTTTGGGTAGATCCTTGCTTCGTGCTCGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005829 GO:0006810 GO:0006888 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0031080 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070013 GO:0098588 GO:0098805 GO:0098852

KEGG Pathways

Metabolic & Signaling

ko03013 ko04141 ko04150 map03013 map04141 map04150

Pfam Domains

Protein Families

WD40

Protein Analysis

81

Amino Acids

8.73

Weight (kDa)

5.98

Isoelectric Point (pI)

26.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR3_1st	PF25173	8 - 62	4.8e-07	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	8 - 65	6.1e-06	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	10 - 69	2.1e-09	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0022130)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02380 FvH4_1g02380
pyrus_communis	pycom17g03780
rosa_samantha	Rh4BG007700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	172
Acc36I	ACCTGC	1 cut(s)	172
AciI	CCGC	1 cut(s)	131
AclWI	GGATC	1 cut(s)	215
AfiI	CCNNNNNNNGG	2 cut(s)	213, 214
AgsI	TTSAA	1 cut(s)	20
AjnI	CCWGG	1 cut(s)	30
Alw21I	GWGCWC	1 cut(s)	237
AlwI	GGATC	1 cut(s)	215
AspLEI	GCGC	1 cut(s)	203
AspS9I	GGNCC	1 cut(s)	170
AsuHPI	GGTGA	1 cut(s)	20
AvaII	GGWCC	1 cut(s)	170
Bbv12I	GWGCWC	1 cut(s)	237
BciT130I	CCWGG	1 cut(s)	32
BfaI	CTAG	1 cut(s)	77
BfuAI	ACCTGC	1 cut(s)	172
Bme1390I	CCNGG	1 cut(s)	32
Bme18I	GGWCC	1 cut(s)	170
BmgT120I	GGNCC	1 cut(s)	170
BmrFI	CCNGG	1 cut(s)	32
BmsI	GCATC	2 cut(s)	89, 212
BsaJI	CCNNGG	2 cut(s)	5, 54
Bsc4I	CCNNNNNNNGG	2 cut(s)	213, 214
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	2 cut(s)	5, 54
BseGI	GGATG	2 cut(s)	40, 203
BseLI	CCNNNNNNNGG	2 cut(s)	213, 214
BsiHKAI	GWGCWC	1 cut(s)	237
BslFI	GGGAC	1 cut(s)	206
BslI	CCNNNNNNNGG	2 cut(s)	213, 214
BsmFI	GGGAC	1 cut(s)	206
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	1 cut(s)	220
Bsp19I	CCATGG	1 cut(s)	54
BspACI	CCGC	1 cut(s)	131
BspMI	ACCTGC	1 cut(s)	172
BspPI	GGATC	1 cut(s)	215
BssECI	CCNNGG	2 cut(s)	5, 54
BssMI	GATC	1 cut(s)	220
BssT1I	CCWWGG	1 cut(s)	54
Bst2UI	CCWGG	1 cut(s)	32
BstDSI	CCRYGG	2 cut(s)	5, 54
BstEII	GGTNACC	1 cut(s)	26
BstF5I	GGATG	2 cut(s)	40, 203
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	1 cut(s)	223
BstMBI	GATC	1 cut(s)	220
BstNI	CCWGG	1 cut(s)	32
BstPI	GGTNACC	1 cut(s)	26
BstSCI	CCNGG	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	220
BtgI	CCRYGG	2 cut(s)	5, 54
BtsCI	GGATG	2 cut(s)	40, 203
BveI	ACCTGC	1 cut(s)	172
CfoI	GCGC	1 cut(s)	203
Cfr13I	GGNCC	1 cut(s)	170
CseI	GACGC	1 cut(s)	62
CviAII	CATG	2 cut(s)	44, 55
CviJI	RGCY	2 cut(s)	53, 86
CviKI_1	RGCY	2 cut(s)	53, 86
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
Eco130I	CCWWGG	1 cut(s)	54
Eco47I	GGWCC	1 cut(s)	170
Eco91I	GGTNACC	1 cut(s)	26
EcoO109I	RGGNCCY	1 cut(s)	170
EcoO65I	GGTNACC	1 cut(s)	26
EcoRII	CCWGG	1 cut(s)	30
EcoT14I	CCWWGG	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	2 cut(s)	47, 58
FaiI	YATR	4 cut(s)	45, 56, 66, 241
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	2 cut(s)	43, 54
FokI	GGATG	2 cut(s)	47, 190
FspBI	CTAG	1 cut(s)	77
GlaI	GCGC	1 cut(s)	202
HgaI	GACGC	1 cut(s)	62
HhaI	GCGC	1 cut(s)	203
Hin1II	CATG	2 cut(s)	47, 58
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HinfI	GANTC	1 cut(s)	95
HphI	GGTGA	1 cut(s)	20
Hpy188I	TCNGA	1 cut(s)	94
HpyCH4IV	ACGT	1 cut(s)	152
HpySE526I	ACGT	1 cut(s)	152
Hsp92II	CATG	2 cut(s)	47, 58
HspAI	GCGC	1 cut(s)	201
Kzo9I	GATC	1 cut(s)	220
LpnPI	CCDG	5 cut(s)	17, 44, 144, 167, 186
LweI	GCATC	2 cut(s)	89, 212
MaeI	CTAG	1 cut(s)	77
MaeII	ACGT	1 cut(s)	152
MaeIII	GTNAC	2 cut(s)	26, 161
MalI	GATC	1 cut(s)	222
MboI	GATC	1 cut(s)	220
MflI	RGATCY	1 cut(s)	220
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	1 cut(s)	111
MnlI	CCTC	2 cut(s)	6, 161
MseI	TTAA	1 cut(s)	105
MslI	CAYNNNNRTG	1 cut(s)	33
MspR9I	CCNGG	1 cut(s)	32
MvaI	CCWGG	1 cut(s)	32
NcoI	CCATGG	1 cut(s)	54
NdeII	GATC	1 cut(s)	220
NlaIII	CATG	2 cut(s)	47, 58
NmuCI	GTSAC	2 cut(s)	26, 161
PaqCI	CACCTGC	1 cut(s)	172
PfeI	GAWTC	1 cut(s)	95
PpuMI	RGGWCCY	1 cut(s)	170
Psp5II	RGGWCCY	1 cut(s)	170
Psp6I	CCWGG	1 cut(s)	30
PspEI	GGTNACC	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	30
PspPI	GGNCC	1 cut(s)	170
PspPPI	RGGWCCY	1 cut(s)	170
PsuI	RGATCY	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	33
SaqAI	TTAA	1 cut(s)	105
Sau3AI	GATC	1 cut(s)	220
Sau96I	GGNCC	1 cut(s)	170
ScrFI	CCNGG	1 cut(s)	32
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	5 cut(s)	147, 155, 163, 172, 186
SfaNI	GCATC	2 cut(s)	89, 212
SinI	GGWCC	1 cut(s)	170
SmiMI	CAYNNNNRTG	1 cut(s)	33
Sse9I	AATT	1 cut(s)	111
SsiI	CCGC	1 cut(s)	131
SspMI	CTAG	1 cut(s)	77
StyD4I	CCNGG	1 cut(s)	30
StyI	CCWWGG	1 cut(s)	54
TaiI	ACGT	1 cut(s)	155
TasI	AATT	1 cut(s)	111
TfiI	GAWTC	1 cut(s)	95
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TseFI	GTSAC	2 cut(s)	26, 161
Tsp45I	GTSAC	2 cut(s)	26, 161
TspDTI	ATGAA	1 cut(s)	78
VpaK11BI	GGWCC	1 cut(s)	170
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.