Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0022130

Physical Location & Seq

Genomic Coordinates Forward (+)

1137722 .. 1137961

Gene Structure 240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG007700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGCCGGGGCAGAAGATTGAAACGGGTCACCAGGATGTTGTTCATGATGTTGCCATGGATTACTATGGAAAGCGTCTAGCATCAGCTTCATCTGATATGACCATTAAGATAATTGGTGTCGGCAGCAATGCGGGTTCACAGCACCTTGCTACATTGTCCGTCCGGTCACAGAGGTCCTGTATGGCAGGTGGGTTGGGCGCATCCCAAGTTTGGGCCGATCCTTGCTTCGTGCTCGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005829 GO:0006810 GO:0006888 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0031080 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070013 GO:0098588 GO:0098805 GO:0098852

KEGG Pathways

Metabolic & Signaling

ko03013 ko04141 ko04150 map03013 map04141 map04150

Pfam Domains

Protein Families

WD40

Protein Analysis

79

Amino Acids

8.31

Weight (kDa)

6.8

Isoelectric Point (pI)

47.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022130)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02380 FvH4_1g02380
pyrus_communis	pycom17g03780
rosa_samantha	Rh4BG007700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	176
Acc36I	ACCTGC	1 cut(s)	176
AciI	CCGC	1 cut(s)	131
AclWI	GGATC	1 cut(s)	212
AfiI	CCNNNNNNNGG	2 cut(s)	210, 211
AgsI	TTSAA	1 cut(s)	20
AjnI	CCWGG	1 cut(s)	30
AluBI	AGCT	1 cut(s)	86
AluI	AGCT	1 cut(s)	86
Alw21I	GWGCWC	1 cut(s)	234
AlwI	GGATC	1 cut(s)	212
AoxI	GGCC	1 cut(s)	213
ApeKI	GCWGC	1 cut(s)	123
AspLEI	GCGC	1 cut(s)	200
AspS9I	GGNCC	2 cut(s)	174, 213
AsuC2I	CCSGG	1 cut(s)	6
AsuHPI	GGTGA	1 cut(s)	20
AvaII	GGWCC	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	234
BbvI	GCAGC	1 cut(s)	135
BciT130I	CCWGG	1 cut(s)	32
BcnI	CCSGG	1 cut(s)	6
BfaI	CTAG	1 cut(s)	77
BfuAI	ACCTGC	1 cut(s)	176
BisI	GCNGC	1 cut(s)	124
BlsI	GCNGC	1 cut(s)	125
Bme1390I	CCNGG	2 cut(s)	6, 32
Bme18I	GGWCC	1 cut(s)	174
BmgT120I	GGNCC	2 cut(s)	174, 213
BmrFI	CCNGG	2 cut(s)	6, 32
BmsI	GCATC	2 cut(s)	89, 209
BpuMI	CCSGG	1 cut(s)	6
BsaJI	CCNNGG	2 cut(s)	5, 54
BsaWI	WCCGGW	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	2 cut(s)	210, 211
Bse3DI	GCAATG	1 cut(s)	133
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	2 cut(s)	5, 54
BseGI	GGATG	2 cut(s)	40, 200
BseLI	CCNNNNNNNGG	2 cut(s)	210, 211
BseMI	GCAATG	1 cut(s)	133
BseXI	GCAGC	1 cut(s)	135
BshFI	GGCC	1 cut(s)	215
BsiHKAI	GWGCWC	1 cut(s)	234
BsiSI	CCGG	2 cut(s)	5, 163
BslI	CCNNNNNNNGG	2 cut(s)	210, 211
BsnI	GGCC	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	234
Bsp143I	GATC	1 cut(s)	217
Bsp19I	CCATGG	1 cut(s)	54
BspACI	CCGC	1 cut(s)	131
BspANI	GGCC	1 cut(s)	215
BspHI	TCATGA	1 cut(s)	43
BspMI	ACCTGC	1 cut(s)	176
BspPI	GGATC	1 cut(s)	212
BsrDI	GCAATG	1 cut(s)	133
BssECI	CCNNGG	2 cut(s)	5, 54
BssMI	GATC	1 cut(s)	217
BssT1I	CCWWGG	1 cut(s)	54
Bst2UI	CCWGG	1 cut(s)	32
BstDSI	CCRYGG	1 cut(s)	54
BstEII	GGTNACC	1 cut(s)	26
BstF5I	GGATG	2 cut(s)	40, 200
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	1 cut(s)	220
BstMBI	GATC	1 cut(s)	217
BstNI	CCWGG	1 cut(s)	32
BstPI	GGTNACC	1 cut(s)	26
BstSCI	CCNGG	2 cut(s)	4, 30
BstV1I	GCAGC	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	215
BtgI	CCRYGG	1 cut(s)	54
BtsCI	GGATG	2 cut(s)	40, 200
BveI	ACCTGC	1 cut(s)	176
CciI	TCATGA	1 cut(s)	43
CfoI	GCGC	1 cut(s)	200
Cfr13I	GGNCC	2 cut(s)	174, 213
CseI	GACGC	1 cut(s)	62
CviAII	CATG	2 cut(s)	44, 55
CviJI	RGCY	2 cut(s)	86, 215
CviKI_1	RGCY	2 cut(s)	86, 215
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	54
Eco47I	GGWCC	1 cut(s)	174
Eco91I	GGTNACC	1 cut(s)	26
EcoO109I	RGGNCCY	1 cut(s)	174
EcoO65I	GGTNACC	1 cut(s)	26
EcoRII	CCWGG	1 cut(s)	30
EcoT14I	CCWWGG	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	2 cut(s)	47, 58
FaiI	YATR	6 cut(s)	45, 56, 66, 98, 182, 238
FatI	CATG	2 cut(s)	43, 54
FauI	CCCGC	1 cut(s)	124
Fnu4HI	GCNGC	1 cut(s)	124
FokI	GGATG	2 cut(s)	47, 187
Fsp4HI	GCNGC	1 cut(s)	124
FspBI	CTAG	1 cut(s)	77
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	1 cut(s)	124
HaeIII	GGCC	1 cut(s)	215
HapII	CCGG	2 cut(s)	5, 163
HgaI	GACGC	1 cut(s)	62
HhaI	GCGC	1 cut(s)	200
Hin1II	CATG	2 cut(s)	47, 58
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HpaII	CCGG	2 cut(s)	5, 163
HphI	GGTGA	1 cut(s)	20
Hpy166II	GTNNAC	1 cut(s)	137
Hpy188I	TCNGA	1 cut(s)	94
Hpy188III	TCNNGA	1 cut(s)	44
Hpy8I	GTNNAC	1 cut(s)	137
Hsp92II	CATG	2 cut(s)	47, 58
HspAI	GCGC	1 cut(s)	198
Kzo9I	GATC	1 cut(s)	217
LpnPI	CCDG	6 cut(s)	17, 18, 44, 171, 176, 190
Lsp1109I	GCAGC	1 cut(s)	135
LweI	GCATC	2 cut(s)	89, 209
MaeI	CTAG	1 cut(s)	77
MaeIII	GTNAC	2 cut(s)	26, 165
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	1 cut(s)	25
MhlI	GDGCHC	1 cut(s)	234
MluCI	AATT	1 cut(s)	111
MnlI	CCTC	1 cut(s)	165
MseI	TTAA	1 cut(s)	105
MslI	CAYNNNNRTG	1 cut(s)	33
MspI	CCGG	2 cut(s)	5, 163
MspR9I	CCNGG	2 cut(s)	6, 32
MvaI	CCWGG	1 cut(s)	32
NciI	CCSGG	1 cut(s)	6
NcoI	CCATGG	1 cut(s)	54
NdeII	GATC	1 cut(s)	217
NlaIII	CATG	2 cut(s)	47, 58
NmuCI	GTSAC	2 cut(s)	26, 165
PagI	TCATGA	1 cut(s)	43
PaqCI	CACCTGC	1 cut(s)	176
PkrI	GCNGC	1 cut(s)	125
PpuMI	RGGWCCY	1 cut(s)	174
Psp5II	RGGWCCY	1 cut(s)	174
Psp6I	CCWGG	1 cut(s)	30
PspEI	GGTNACC	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	30
PspPI	GGNCC	2 cut(s)	174, 213
PspPPI	RGGWCCY	1 cut(s)	174
RseI	CAYNNNNRTG	1 cut(s)	33
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	1 cut(s)	124
Sau3AI	GATC	1 cut(s)	217
Sau96I	GGNCC	2 cut(s)	174, 213
ScrFI	CCNGG	2 cut(s)	6, 32
SduI	GDGCHC	1 cut(s)	234
SetI	ASST	4 cut(s)	88, 147, 176, 190
SfaNI	GCATC	2 cut(s)	89, 209
SinI	GGWCC	1 cut(s)	174
SmiMI	CAYNNNNRTG	1 cut(s)	33
Sse9I	AATT	1 cut(s)	111
SsiI	CCGC	1 cut(s)	131
SspMI	CTAG	1 cut(s)	77
StyD4I	CCNGG	2 cut(s)	4, 30
StyI	CCWWGG	1 cut(s)	54
TasI	AATT	1 cut(s)	111
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TseFI	GTSAC	2 cut(s)	26, 165
TseI	GCWGC	1 cut(s)	123
Tsp45I	GTSAC	2 cut(s)	26, 165
TspDTI	ATGAA	2 cut(s)	32, 78
TspGWI	ACGGA	1 cut(s)	148
VpaK11BI	GGWCC	1 cut(s)	174
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.