FvH4_1g06490

Protein of unknown function (DUF1005)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0014428
Physical Location & Seq
Forward (+)
3425580 .. 3428438
2859 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g06490.t1

Sequence Viewer

Length: 1266 bp
ATGGATCCGTGTCCCTTTGTTCGGGTCATGGTCGACTCGCTAGCCCTCAAGCTTCCACACGCCACCAAGCCTGCCCGTTCCGGTGTCCACTCCTCCACCACTCCCTGCTTCTGCGAGATGAAGATCAAGAACTTCCCTCCCCAAACCGCCCTTCTCAGTCTCTCTACTTCTACTAACGACTCCCCTCCCGACTCCTCCACCACCTCAGCGCATGGGTTCAACCTGGACCCGACCGCGCTGAGGCGGCTGTCGGGAAAGCCCATCACGCTCCGTGTCTCTGTGTACACGGGGCGGATGGGCAGCACGTGTGGAGTCACCAGCGGGAAGCTGCTGGGCCGCGTCAACCTCAGCATTGACCTCGATGCGGCAAAGACCAGCCCGCGGATGATACACAACGGGTGGATGAAGCTCGGGAAGCACAGCGACAAGCCATCAGCGCGGCTGCACATGGTGGTGCGGGCTGAACCGGATCCCCGGTTTGTTTTCCAGTTCGGTGGCGAACCGGAGTGTAGTCCGGTGATTTTTCAGATTCAGGGCCGGGATATACAGCAGCCCGTTTTCAGCTGCAAGTTCAGTGCCGACCGTAACTCCAGATTCCGATCTCTGCCACCAGATTTCACCAGCAAAAATAATAGAGGATGGAGGAGAACCTTTTCAGGTGAGAGAGAGAGGCCAGGAAGGGAGAGAAAGGGTTGGATGATAACGATTCATGATCTATCCGGCTCACCAGTGGCGGCTGCCTCCATGATCACACCCTTTGTACCTTCCCCGGGGTCTGACAGGGTCTCCAGGTCGAACCCGGGTGCTTGGCTTATCCTCCGACCCCATGGCTTCTCCGTTAACAACTGGAAGCCATGGGGCCGTTTGGAGGCTTGGCGCGAGAGAGGCCCTGTTGATGGCTTGGGCTACAAGTTTGAGCTTGTCACTGACAATGGTCCTAGTAGCAGCATTACCATCGCGGAAGCTACATTGAGCATGAAAAAGGGCGGGGAGTTTTGCATCGACAGTCGGCTATTGAGAGATCAAGGTTTGAATTACTCGAGGTCTCCGGTGAAAGGATTTGTGATGGGATCAAGCGTCGAAGGGGAAGGAAAGGTGAGCAAGCCTATGGTGCAAGTAGGAGTGCAGCATGTAACTTGTATGGCTGATGCTGCTCTGTTTGTAGCACTTTCTGCTGCCATTGACCTTAGCATGGATGCTTGCAAACTCTTCTCACATAAACTAAGGAAGGAGCTTTGCTATGATGAACAGAATTTCTTGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1005

Protein Analysis

422

Amino Acids

46.28

Weight (kDa)

9.61

Isoelectric Point (pI)

40.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1005 PF06219 1 - 413 2.6e-162 Protein of unknown function (DUF1005)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014428)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29310 AT4G29310
fragaria_vesca FvH4_1g06490
malus_domestica MD02G1068200.v1.1 MD15G1199800.v1.1
prunus_persica Prupe.7G217400_v2.0.a1
pyrus_communis pycom15g17730
rosa_chinensis RchiOBHm_Chr2g0092241
rosa_laevigata RLG00000016289
rosa_multiflora Rmu_sc0000524.1_g000029
rosa_roxburghii Rroxscaffold_2G00149340
rosa_rugosa Rorug02G0024000
rosa_samantha Rh2AG069800 Rh2BG069300 Rh2CG070500 Rh2DG068200
rosa_wichuraiana Rw2G006240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 33
AccII CGCG 6 cut(s) 236, 339, 382, 439, 879, 959
AclWI GGATC 4 cut(s) 12, 464, 477, 1078
AcsI RAATTY 1 cut(s) 1252
AcvI CACGTG 1 cut(s) 306
AdeI CACNNNGTG 1 cut(s) 451
AfaI GTAC 2 cut(s) 284, 762
AfiI CCNNNNNNNGG 9 cut(s) 21, 240, 364, 381, 770, 868, 896, 1055, 1192
AflIII ACRYGT 1 cut(s) 305
AgsI TTSAA 2 cut(s) 220, 1033
AjnI CCWGG 3 cut(s) 222, 673, 788
AjuI GAANNNNNNNTTGG 2 cut(s) 135, 167
AluBI AGCT 7 cut(s) 52, 328, 409, 564, 919, 965, 1234
AluI AGCT 7 cut(s) 52, 328, 409, 564, 919, 965, 1234
Alw26I GTCTC 4 cut(s) 164, 280, 790, 1050
AlwI GGATC 4 cut(s) 12, 464, 477, 1078
Ama87I CYCGRG 4 cut(s) 410, 769, 799, 1039
AoxI GGCC 5 cut(s) 334, 535, 671, 859, 886
ApoI RAATTY 1 cut(s) 1252
Asp700I GAANNNNTTC 1 cut(s) 652
AspLEI GCGC 4 cut(s) 211, 238, 439, 879
AspS9I GGNCC 6 cut(s) 226, 334, 535, 859, 887, 935
AsuC2I CCSGG 6 cut(s) 475, 539, 770, 771, 800, 801
AsuHPI GGTGA 7 cut(s) 307, 529, 610, 671, 717, 1063, 1108
AsuNHI GCTAGC 1 cut(s) 40
AvaI CYCGRG 4 cut(s) 410, 769, 799, 1039
AvaII GGWCC 2 cut(s) 226, 935
BamHI GGATCC 2 cut(s) 4, 469
BbrPI CACGTG 1 cut(s) 306
BbvCI CCTCAGC 3 cut(s) 205, 239, 347
BccI CCATC 7 cut(s) 269, 289, 439, 633, 890, 962, 1060
BceAI ACGGC 1 cut(s) 846
BcgI CGANNNNNNTGC 4 cut(s) 340, 374, 937, 971
BciT130I CCWGG 3 cut(s) 224, 675, 790
BclI TGATCA 1 cut(s) 747
BcnI CCSGG 6 cut(s) 475, 539, 770, 771, 800, 801
BcoDI GTCTC 4 cut(s) 164, 280, 790, 1050
BfaI CTAG 2 cut(s) 41, 939
Bme1390I CCNGG 9 cut(s) 224, 475, 539, 675, 770, 771, 790, 800, 801
Bme18I GGWCC 2 cut(s) 226, 935
BmeT110I CYCGRG 4 cut(s) 410, 769, 799, 1039
BmgT120I GGNCC 6 cut(s) 226, 334, 535, 859, 887, 935
BmiI GGNNCC 4 cut(s) 6, 228, 471, 860
BmrFI CCNGG 9 cut(s) 224, 475, 539, 675, 770, 771, 790, 800, 801
BmsI GCATC 4 cut(s) 352, 1008, 1138, 1186
BmtI GCTAGC 1 cut(s) 44
BoxI GACNNNNGTC 1 cut(s) 933
BpmI CTGGAG 2 cut(s) 574, 772
Bpu10I CCTNAGC 4 cut(s) 205, 239, 347, 1187
BpuEI CTTGAG 1 cut(s) 32
BpuMI CCSGG 6 cut(s) 475, 539, 770, 771, 800, 801
BsaAI YACGTR 1 cut(s) 306
BsaBI GATNNNNATC 2 cut(s) 122, 598
BsaI GGTCTC 2 cut(s) 790, 1050
BsaJI CCNNGG 8 cut(s) 380, 473, 768, 769, 770, 799, 826, 854
BsaWI WCCGGW 5 cut(s) 80, 466, 502, 514, 1048
BsaXI ACNNNNNCTCC 4 cut(s) 572, 602, 770, 800
Bsc4I CCNNNNNNNGG 9 cut(s) 21, 240, 364, 381, 770, 868, 896, 1055, 1192
Bse1I ACTGG 3 cut(s) 487, 728, 851
Bse8I GATNNNNATC 2 cut(s) 122, 598
BseBI CCWGG 3 cut(s) 224, 675, 790
BseDI CCNNGG 8 cut(s) 380, 473, 768, 769, 770, 799, 826, 854
BseGI GGATG 6 cut(s) 300, 390, 408, 644, 702, 1201
BseJI GATNNNNATC 2 cut(s) 122, 598
BseLI CCNNNNNNNGG 9 cut(s) 21, 240, 364, 381, 770, 868, 896, 1055, 1192
BseMII CTCAG 4 cut(s) 169, 219, 230, 361
BseNI ACTGG 3 cut(s) 487, 728, 851
BseRI GAGGAG 3 cut(s) 82, 184, 658
BseYI CCCAGC 1 cut(s) 331
BsgI GTGCAG 2 cut(s) 428, 1145
Bsh1236I CGCG 6 cut(s) 236, 339, 382, 439, 879, 959
Bsh1285I CGRYCG 2 cut(s) 234, 583
BshFI GGCC 5 cut(s) 336, 537, 673, 861, 888
BsiEI CGRYCG 2 cut(s) 234, 583
BsiHKCI CYCGRG 4 cut(s) 410, 769, 799, 1039
BslI CCNNNNNNNGG 9 cut(s) 21, 240, 364, 381, 770, 868, 896, 1055, 1192
BsmAI GTCTC 4 cut(s) 164, 280, 790, 1050
BsnI GGCC 5 cut(s) 336, 537, 673, 861, 888
Bso31I GGTCTC 2 cut(s) 790, 1050
BsoBI CYCGRG 4 cut(s) 410, 769, 799, 1039
Bsp1407I TGTACA 1 cut(s) 282
Bsp143I GATC 8 cut(s) 4, 123, 469, 599, 712, 747, 1021, 1070
Bsp19I CCATGG 2 cut(s) 826, 854
BspANI GGCC 5 cut(s) 336, 537, 673, 861, 888
BspCNI CTCAG 4 cut(s) 168, 218, 231, 360
BspFNI CGCG 6 cut(s) 236, 339, 382, 439, 879, 959
BspHI TCATGA 1 cut(s) 709
BspLI GGNNCC 4 cut(s) 6, 228, 471, 860
BspOI GCTAGC 1 cut(s) 44
BspPI GGATC 4 cut(s) 12, 464, 477, 1078
BspTNI GGTCTC 2 cut(s) 790, 1050
BsrGI TGTACA 1 cut(s) 282
BsrI ACTGG 3 cut(s) 487, 728, 851
BssECI CCNNGG 8 cut(s) 380, 473, 768, 769, 770, 799, 826, 854
BssMI GATC 8 cut(s) 4, 123, 469, 599, 712, 747, 1021, 1070
BssT1I CCWWGG 2 cut(s) 826, 854
Bst2UI CCWGG 3 cut(s) 224, 675, 790
Bst4CI ACNGT 2 cut(s) 584, 1007
Bst6I CTCTTC 1 cut(s) 1214
BstAPI GCANNNNNTGC 1 cut(s) 1172
BstAUI TGTACA 1 cut(s) 282
BstBAI YACGTR 1 cut(s) 306
BstC8I GCNNGC 6 cut(s) 42, 72, 380, 459, 1103, 1201
BstDEI CTNAG 7 cut(s) 155, 205, 239, 347, 1187, 1223, 1263
BstDSI CCRYGG 3 cut(s) 380, 826, 854
BstF5I GGATG 6 cut(s) 300, 390, 408, 644, 702, 1201
BstFNI CGCG 6 cut(s) 236, 339, 382, 439, 879, 959
BstHHI GCGC 4 cut(s) 211, 238, 439, 879
BstKTI GATC 8 cut(s) 7, 126, 472, 602, 715, 750, 1024, 1073
BstMAI GTCTC 4 cut(s) 164, 280, 790, 1050
BstMBI GATC 8 cut(s) 4, 123, 469, 599, 712, 747, 1021, 1070
BstMCI CGRYCG 2 cut(s) 234, 583
BstMWI GCNNNNNNNGC 8 cut(s) 244, 265, 415, 436, 885, 1111, 1151, 1172
BstNI CCWGG 3 cut(s) 224, 675, 790
BstNSI RCATGY 1 cut(s) 1133
BstPAI GACNNNNGTC 1 cut(s) 933
BstSCI CCNGG 9 cut(s) 222, 473, 537, 673, 768, 769, 788, 798, 799
BstUI CGCG 6 cut(s) 236, 339, 382, 439, 879, 959
BstX2I RGATCY 2 cut(s) 4, 469
BstXI CCANNNNNNTGG 1 cut(s) 494
BstYI RGATCY 2 cut(s) 4, 469
BsuRI GGCC 5 cut(s) 336, 537, 673, 861, 888
BtgI CCRYGG 3 cut(s) 380, 826, 854
BtgZI GCGATG 1 cut(s) 940
BtsCI GGATG 6 cut(s) 300, 390, 408, 644, 702, 1201
BtsIMutI CAGTG 3 cut(s) 580, 735, 924
Cac8I GCNNGC 6 cut(s) 42, 72, 380, 459, 1103, 1201
CciI TCATGA 1 cut(s) 709
CfoI GCGC 4 cut(s) 211, 238, 439, 879
Cfr13I GGNCC 6 cut(s) 226, 334, 535, 859, 887, 935
Cfr42I CCGCGG 1 cut(s) 383
Cfr9I CCCGGG 2 cut(s) 769, 799
CseI GACGC 2 cut(s) 328, 1066
Csp6I GTAC 2 cut(s) 283, 761
CviQI GTAC 2 cut(s) 283, 761
DdeI CTNAG 7 cut(s) 155, 205, 239, 347, 1187, 1223, 1263
DpnI GATC 8 cut(s) 6, 125, 471, 601, 714, 749, 1023, 1072
DpnII GATC 8 cut(s) 4, 123, 469, 599, 712, 747, 1021, 1070
DraIII CACNNNGTG 1 cut(s) 451
Eam1104I CTCTTC 1 cut(s) 1214
EarI CTCTTC 1 cut(s) 1214
EciI GGCGGA 1 cut(s) 307
Eco130I CCWWGG 2 cut(s) 826, 854
Eco31I GGTCTC 2 cut(s) 790, 1050
Eco47I GGWCC 2 cut(s) 226, 935
Eco72I CACGTG 1 cut(s) 306
Eco88I CYCGRG 4 cut(s) 410, 769, 799, 1039
EcoO109I RGGNCCY 1 cut(s) 887
EcoRII CCWGG 3 cut(s) 222, 673, 788
EcoT14I CCWWGG 2 cut(s) 826, 854
ErhI CCWWGG 2 cut(s) 826, 854
FauI CCCGC 4 cut(s) 314, 387, 450, 980
FbaI TGATCA 1 cut(s) 747
FblI GTMKAC 1 cut(s) 33
FokI GGATG 6 cut(s) 307, 397, 415, 651, 709, 1208
FspBI CTAG 2 cut(s) 41, 939
GlaI GCGC 4 cut(s) 210, 237, 438, 878
GsaI CCCAGC 1 cut(s) 335
GsuI CTGGAG 2 cut(s) 574, 772
HaeIII GGCC 5 cut(s) 336, 537, 673, 861, 888
HgaI GACGC 2 cut(s) 328, 1066
HhaI GCGC 4 cut(s) 211, 238, 439, 879
Hin6I GCGC 4 cut(s) 209, 236, 437, 877
HinP1I GCGC 4 cut(s) 209, 236, 437, 877
HincII GTYRAC 3 cut(s) 34, 343, 841
HindII GTYRAC 3 cut(s) 34, 343, 841
HindIII AAGCTT 1 cut(s) 50
HinfI GANTC 7 cut(s) 35, 179, 191, 312, 529, 594, 706
HpaI GTTAAC 1 cut(s) 841
HphI GGTGA 7 cut(s) 307, 529, 610, 671, 717, 1063, 1108
Hpy166II GTNNAC 6 cut(s) 34, 88, 283, 285, 343, 841
Hpy188I TCNGA 4 cut(s) 528, 599, 778, 821
Hpy188III TCNNGA 6 cut(s) 127, 188, 252, 412, 591, 710
Hpy8I GTNNAC 6 cut(s) 34, 88, 283, 285, 343, 841
Hpy99I CGWCG 1 cut(s) 1082
HpyAV CCTTC 6 cut(s) 161, 672, 774, 1076, 1082, 1222
HpyCH4III ACNGT 2 cut(s) 584, 1007
HpyCH4IV ACGT 1 cut(s) 305
HpyCH4V TGCA 6 cut(s) 445, 567, 999, 1114, 1126, 1203
HpyF10VI GCNNNNNNNGC 8 cut(s) 244, 265, 415, 436, 885, 1111, 1151, 1172
HpyF3I CTNAG 7 cut(s) 155, 205, 239, 347, 1187, 1223, 1263
HpySE526I ACGT 1 cut(s) 305
HspAI GCGC 4 cut(s) 209, 236, 437, 877
Ksp22I TGATCA 1 cut(s) 747
KspAI GTTAAC 1 cut(s) 841
KspI CCGCGG 1 cut(s) 383
Kzo9I GATC 8 cut(s) 4, 123, 469, 599, 712, 747, 1021, 1070
LmnI GCTCC 2 cut(s) 273, 1231
LweI GCATC 4 cut(s) 352, 1008, 1138, 1186
MaeI CTAG 2 cut(s) 41, 939
MaeII ACGT 1 cut(s) 305
MaeIII GTNAC 4 cut(s) 313, 584, 922, 1132
MalI GATC 8 cut(s) 6, 125, 471, 601, 714, 749, 1023, 1072
MboI GATC 8 cut(s) 4, 123, 469, 599, 712, 747, 1021, 1070
MboII GAAGA 2 cut(s) 133, 1201
MflI RGATCY 2 cut(s) 4, 469
MluCI AATT 2 cut(s) 1033, 1252
MlyI GAGTC 4 cut(s) 29, 173, 185, 321
MmeI TCCRAC 2 cut(s) 674, 844
MroXI GAANNNNTTC 1 cut(s) 652
MseI TTAA 1 cut(s) 840
MslI CAYNNNNRTG 1 cut(s) 452
MspA1I CMGCKG 3 cut(s) 321, 382, 564
MspR9I CCNGG 9 cut(s) 224, 475, 539, 675, 770, 771, 790, 800, 801
MvaI CCWGG 3 cut(s) 224, 675, 790
MvnI CGCG 6 cut(s) 236, 339, 382, 439, 879, 959
MwoI GCNNNNNNNGC 8 cut(s) 244, 265, 415, 436, 885, 1111, 1151, 1172
NciI CCSGG 6 cut(s) 475, 539, 770, 771, 800, 801
NcoI CCATGG 2 cut(s) 826, 854
NdeII GATC 8 cut(s) 4, 123, 469, 599, 712, 747, 1021, 1070
NheI GCTAGC 1 cut(s) 40
NlaIV GGNNCC 4 cut(s) 6, 228, 471, 860
NmuCI GTSAC 2 cut(s) 313, 922
NspI RCATGY 1 cut(s) 1133
PaeR7I CTCGAG 1 cut(s) 1039
PagI TCATGA 1 cut(s) 709
PdmI GAANNNNTTC 1 cut(s) 652
PfeI GAWTC 3 cut(s) 529, 594, 706
PflFI GACNNNGTC 1 cut(s) 782
PleI GAGTC 4 cut(s) 29, 173, 185, 320
PmaCI CACGTG 1 cut(s) 306
PmlI CACGTG 1 cut(s) 306
PpsI GAGTC 4 cut(s) 29, 173, 185, 320
Ppu21I YACGTR 1 cut(s) 306
PshAI GACNNNNGTC 1 cut(s) 933
Psp6I CCWGG 3 cut(s) 222, 673, 788
PspCI CACGTG 1 cut(s) 306
PspFI CCCAGC 1 cut(s) 331
PspGI CCWGG 3 cut(s) 222, 673, 788
PspN4I GGNNCC 4 cut(s) 6, 228, 471, 860
PspPI GGNCC 6 cut(s) 226, 334, 535, 859, 887, 935
PspXI VCTCGAGB 1 cut(s) 1039
PsuI RGATCY 2 cut(s) 4, 469
PsyI GACNNNGTC 1 cut(s) 782
PvuII CAGCTG 1 cut(s) 564
RsaI GTAC 2 cut(s) 284, 762
RsaNI GTAC 2 cut(s) 283, 761
RseI CAYNNNNRTG 1 cut(s) 452
SacII CCGCGG 1 cut(s) 383
SalI GTCGAC 1 cut(s) 32
SaqAI TTAA 1 cut(s) 840
Sau3AI GATC 8 cut(s) 4, 123, 469, 599, 712, 747, 1021, 1070
Sau96I GGNCC 6 cut(s) 226, 334, 535, 859, 887, 935
SchI GAGTC 4 cut(s) 29, 173, 185, 321
ScrFI CCNGG 9 cut(s) 224, 475, 539, 675, 770, 771, 790, 800, 801
SfaNI GCATC 4 cut(s) 352, 1008, 1138, 1186
Sfr274I CTCGAG 1 cut(s) 1039
Sfr303I CCGCGG 1 cut(s) 383
SgrBI CCGCGG 1 cut(s) 383
SinI GGWCC 2 cut(s) 226, 935
SlaI CTCGAG 1 cut(s) 1039
SmaI CCCGGG 2 cut(s) 771, 801
SmiMI CAYNNNNRTG 1 cut(s) 452
SmlI CTYRAG 2 cut(s) 47, 1039
SmoI CTYRAG 2 cut(s) 47, 1039
Sse9I AATT 2 cut(s) 1033, 1252
SspMI CTAG 2 cut(s) 41, 939
StyD4I CCNGG 9 cut(s) 222, 473, 537, 673, 768, 769, 788, 798, 799
StyI CCWWGG 2 cut(s) 826, 854
TaaI ACNGT 2 cut(s) 584, 1007
TaiI ACGT 1 cut(s) 308
TaqI TCGA 6 cut(s) 33, 360, 794, 1002, 1040, 1080
TasI AATT 2 cut(s) 1033, 1252
TatI WGTACW 1 cut(s) 282
TauI GCSGC 5 cut(s) 247, 339, 368, 442, 737
TfiI GAWTC 3 cut(s) 529, 594, 706
Tru1I TTAA 1 cut(s) 840
Tru9I TTAA 1 cut(s) 840
TscAI CASTG 3 cut(s) 580, 735, 931
TseFI GTSAC 2 cut(s) 313, 922
Tsp45I GTSAC 2 cut(s) 313, 922
TspDTI ATGAA 5 cut(s) 134, 419, 698, 992, 1260
TspGWI ACGGA 2 cut(s) 260, 826
TspMI CCCGGG 2 cut(s) 769, 799
TspRI CASTG 3 cut(s) 580, 735, 931
Tth111I GACNNNGTC 1 cut(s) 782
VpaK11BI GGWCC 2 cut(s) 226, 935
XapI RAATTY 1 cut(s) 1252
XceI RCATGY 1 cut(s) 1133
XhoI CTCGAG 1 cut(s) 1039
XmaI CCCGGG 2 cut(s) 769, 799
XmiI GTMKAC 1 cut(s) 33
XmnI GAANNNNTTC 1 cut(s) 652
XspI CTAG 2 cut(s) 41, 939
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.