FvH4_1g15760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0017077
Physical Location & Seq
Reverse (-)
8953608 .. 8953937
330 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g15760.t1

Sequence Viewer

Length: 330 bp
ATGGCCTTAAGCAACTCAACCTTCATTGCTTGTTCTCTATTCCTTTCTCTACTTATAATCTTAACCTGGGAAATTCAGTCCGTTGATGCAAGGCTTTTGGCTGATACGAGCCAGCTCAAAAACCTCCAAACTGATCAATACAAATCAGTGGTTCATCACGACACTGAAACTTCAAAAGAAGTGATCGTATCTCCCCCTACCTCAGTAACACCACCGCAAAGTGGGGTTGCTGGTGCAGCACAGCCACCTCCTCCCGCCCATGGCATAGATGACTTCAGGCCCACGGCTCCAGGTCACAGCCCCGGTGTTGGACATTCCACTCACAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

11.55

Weight (kDa)

5.75

Isoelectric Point (pI)

48.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017077)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23440
fragaria_vesca FvH4_1g15760
prunus_persica Prupe.7G135800_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0105041
rosa_laevigata RLG00000017395
rosa_multiflora Rmu_sc0011508.1_g000005
rosa_roxburghii Rroxscaffold_2G00138530
rosa_rugosa Rorug02G0125700
rosa_samantha Rh2AG176300 Rh2BG184200 Rh2CG180800 Rh2DG182300
rosa_wichuraiana Rw2G013820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 56
AciI CCGC 2 cut(s) 215, 255
AcsI RAATTY 1 cut(s) 72
AcuI CTGAAG 1 cut(s) 259
AfiI CCNNNNNNNGG 3 cut(s) 221, 260, 308
AflII CTTAAG 1 cut(s) 7
AgsI TTSAA 1 cut(s) 174
AjnI CCWGG 2 cut(s) 65, 289
AluBI AGCT 1 cut(s) 115
AluI AGCT 1 cut(s) 115
AoxI GGCC 2 cut(s) 3, 278
ApeKI GCWGC 1 cut(s) 236
ApoI RAATTY 1 cut(s) 72
AspS9I GGNCC 1 cut(s) 279
AsuC2I CCSGG 1 cut(s) 303
BbvI GCAGC 1 cut(s) 248
BceAI ACGGC 1 cut(s) 300
BciT130I CCWGG 2 cut(s) 67, 291
BclI TGATCA 1 cut(s) 133
BcnI CCSGG 1 cut(s) 303
BfaI CTAG 1 cut(s) 328
BfrI CTTAAG 1 cut(s) 7
BisI GCNGC 1 cut(s) 237
BlsI GCNGC 1 cut(s) 238
Bme1390I CCNGG 3 cut(s) 67, 291, 303
BmgT120I GGNCC 1 cut(s) 279
BmiI GGNNCC 1 cut(s) 288
BmrFI CCNGG 3 cut(s) 67, 291, 303
BmsI GCATC 1 cut(s) 76
BpmI CTGGAG 1 cut(s) 273
BpuMI CCSGG 1 cut(s) 303
BsaJI CCNNGG 4 cut(s) 66, 259, 282, 301
Bsc4I CCNNNNNNNGG 3 cut(s) 221, 260, 308
Bse3DI GCAATG 1 cut(s) 24
BseBI CCWGG 2 cut(s) 67, 291
BseDI CCNNGG 4 cut(s) 66, 259, 282, 301
BseLI CCNNNNNNNGG 3 cut(s) 221, 260, 308
BseMI GCAATG 1 cut(s) 24
BseMII CTCAG 1 cut(s) 216
BseRI GAGGAG 1 cut(s) 240
BseXI GCAGC 1 cut(s) 248
BsgI GTGCAG 1 cut(s) 255
BshFI GGCC 2 cut(s) 5, 280
BsiSI CCGG 1 cut(s) 303
BslI CCNNNNNNNGG 3 cut(s) 221, 260, 308
BsnI GGCC 2 cut(s) 5, 280
Bsp143I GATC 2 cut(s) 133, 183
Bsp19I CCATGG 1 cut(s) 259
BspACI CCGC 2 cut(s) 215, 255
BspANI GGCC 2 cut(s) 5, 280
BspCNI CTCAG 1 cut(s) 215
BspLI GGNNCC 1 cut(s) 288
BspTI CTTAAG 1 cut(s) 7
BsrDI GCAATG 1 cut(s) 24
BssECI CCNNGG 4 cut(s) 66, 259, 282, 301
BssMI GATC 2 cut(s) 133, 183
BssT1I CCWWGG 1 cut(s) 259
Bst2UI CCWGG 2 cut(s) 67, 291
BstAFI CTTAAG 1 cut(s) 7
BstC8I GCNNGC 1 cut(s) 113
BstDEI CTNAG 1 cut(s) 202
BstDSI CCRYGG 2 cut(s) 259, 282
BstKTI GATC 2 cut(s) 136, 186
BstMBI GATC 2 cut(s) 133, 183
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstNI CCWGG 2 cut(s) 67, 291
BstSCI CCNGG 3 cut(s) 65, 289, 301
BstV1I GCAGC 1 cut(s) 248
BsuRI GGCC 2 cut(s) 5, 280
BtgI CCRYGG 2 cut(s) 259, 282
BtsIMutI CAGTG 2 cut(s) 153, 162
Cac8I GCNNGC 1 cut(s) 113
Cfr13I GGNCC 1 cut(s) 279
CviAII CATG 1 cut(s) 260
CviJI RGCY 9 cut(s) 5, 94, 101, 111, 115, 244, 280, 287, 300
CviKI_1 RGCY 9 cut(s) 5, 94, 101, 111, 115, 244, 280, 287, 300
DdeI CTNAG 1 cut(s) 202
DpnI GATC 2 cut(s) 135, 185
DpnII GATC 2 cut(s) 133, 183
Eco130I CCWWGG 1 cut(s) 259
Eco57I CTGAAG 1 cut(s) 259
EcoRII CCWGG 2 cut(s) 65, 289
EcoT14I CCWWGG 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 259
FaeI CATG 1 cut(s) 263
FaiI YATR 3 cut(s) 56, 261, 266
FatI CATG 1 cut(s) 259
FauI CCCGC 1 cut(s) 262
FbaI TGATCA 1 cut(s) 133
Fnu4HI GCNGC 1 cut(s) 237
Fsp4HI GCNGC 1 cut(s) 237
FspBI CTAG 1 cut(s) 328
GluI GCNGC 1 cut(s) 237
GsuI CTGGAG 1 cut(s) 273
HaeIII GGCC 2 cut(s) 5, 280
HapII CCGG 1 cut(s) 303
Hin1II CATG 1 cut(s) 263
HpaII CCGG 1 cut(s) 303
Hpy188III TCNNGA 1 cut(s) 158
HpyAV CCTTC 1 cut(s) 31
HpyCH4V TGCA 2 cut(s) 89, 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
HpyF3I CTNAG 1 cut(s) 202
Hsp92II CATG 1 cut(s) 263
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 2 cut(s) 133, 183
LmnI GCTCC 1 cut(s) 292
LpnPI CCDG 8 cut(s) 52, 79, 125, 216, 262, 276, 303, 316
Lsp1109I GCAGC 1 cut(s) 248
LweI GCATC 1 cut(s) 76
MaeI CTAG 1 cut(s) 328
MaeIII GTNAC 2 cut(s) 205, 293
MalI GATC 2 cut(s) 135, 185
MboI GATC 2 cut(s) 133, 183
MluCI AATT 1 cut(s) 72
MmeI TCCRAC 1 cut(s) 289
MnlI CCTC 4 cut(s) 134, 211, 258, 261
MseI TTAA 2 cut(s) 8, 62
MspCI CTTAAG 1 cut(s) 7
MspI CCGG 1 cut(s) 303
MspR9I CCNGG 3 cut(s) 67, 291, 303
MvaI CCWGG 2 cut(s) 67, 291
MwoI GCNNNNNNNGC 1 cut(s) 236
NciI CCSGG 1 cut(s) 303
NcoI CCATGG 1 cut(s) 259
NdeII GATC 2 cut(s) 133, 183
NlaIII CATG 1 cut(s) 263
NlaIV GGNNCC 1 cut(s) 288
NmuCI GTSAC 1 cut(s) 293
PkrI GCNGC 1 cut(s) 238
PsiI TTATAA 1 cut(s) 56
Psp6I CCWGG 2 cut(s) 65, 289
PspGI CCWGG 2 cut(s) 65, 289
PspN4I GGNNCC 1 cut(s) 288
PspPI GGNCC 1 cut(s) 279
SaqAI TTAA 2 cut(s) 8, 62
SatI GCNGC 1 cut(s) 237
Sau3AI GATC 2 cut(s) 133, 183
Sau96I GGNCC 1 cut(s) 279
ScrFI CCNGG 3 cut(s) 67, 291, 303
SetI ASST 7 cut(s) 23, 68, 117, 126, 203, 250, 295
SfaNI GCATC 1 cut(s) 76
SmlI CTYRAG 1 cut(s) 7
SmoI CTYRAG 1 cut(s) 7
Sse9I AATT 1 cut(s) 72
SsiI CCGC 2 cut(s) 215, 255
SspMI CTAG 1 cut(s) 328
StyD4I CCNGG 3 cut(s) 65, 289, 301
StyI CCWWGG 1 cut(s) 259
TasI AATT 1 cut(s) 72
Tru1I TTAA 2 cut(s) 8, 62
Tru9I TTAA 2 cut(s) 8, 62
TscAI CASTG 2 cut(s) 153, 169
TseFI GTSAC 1 cut(s) 293
TseI GCWGC 1 cut(s) 236
Tsp45I GTSAC 1 cut(s) 293
TspDTI ATGAA 2 cut(s) 13, 143
TspGWI ACGGA 1 cut(s) 70
TspRI CASTG 2 cut(s) 153, 169
Vha464I CTTAAG 1 cut(s) 7
XapI RAATTY 1 cut(s) 72
XspI CTAG 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.