Prupe.7G135800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0017077
Physical Location & Seq
Forward (+)
15306958 .. 15307857
900 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G135800.1

Sequence Viewer

Length: 366 bp
ATGGCTTTAAACAAGTTAACCTTCATTTCTTGCTCTCTCCTTTCCCTACTGATCATCTTAACATGGGATATTCAGCCTATTGATGCAAGGCCTTTGAATTCAAGGAGTAAAAACGAACTCCGAAATTTCCAAACACACACCAAAACCCACCAAAACAAGTTGGAGAACAATGTAGATCATATTAATGACTTTCATGGTAAGAACCCAACTGAAGCTTCAACAACTGTTGTGGCATCTCCGCCTCCACCACAAGGTGGTCAGGTTGGTGGGGCAGCACAACAGCCACCTCCCGCACACGGCGTAGAAGACTTCAGGCCCACAGCTCCAGGTCACAGCCCCGGCGTTGGACATTCCATTGAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.07

Weight (kDa)

6.64

Isoelectric Point (pI)

55.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017077)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23440
fragaria_vesca FvH4_1g15760
prunus_persica Prupe.7G135800_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0105041
rosa_laevigata RLG00000017395
rosa_multiflora Rmu_sc0011508.1_g000005
rosa_roxburghii Rroxscaffold_2G00138530
rosa_rugosa Rorug02G0125700
rosa_samantha Rh2AG176300 Rh2BG184200 Rh2CG180800 Rh2DG182300
rosa_wichuraiana Rw2G013820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 254
AciI CCGC 2 cut(s) 239, 291
AcsI RAATTY 2 cut(s) 97, 124
AcuI CTGAAG 2 cut(s) 231, 295
AdeI CACNNNGTG 1 cut(s) 254
AfiI CCNNNNNNNGG 4 cut(s) 251, 254, 296, 344
AgsI TTSAA 3 cut(s) 97, 102, 219
AjnI CCWGG 1 cut(s) 325
AjuI GAANNNNNNNTTGG 2 cut(s) 199, 231
AluBI AGCT 2 cut(s) 215, 323
AluI AGCT 2 cut(s) 215, 323
AoxI GGCC 2 cut(s) 89, 314
ApeKI GCWGC 1 cut(s) 272
ApoI RAATTY 2 cut(s) 97, 124
AseI ATTAAT 1 cut(s) 183
AspS9I GGNCC 1 cut(s) 315
AsuC2I CCSGG 1 cut(s) 339
BbsI GAAGAC 1 cut(s) 312
BbvI GCAGC 1 cut(s) 284
BceAI ACGGC 1 cut(s) 313
BciT130I CCWGG 1 cut(s) 327
BclI TGATCA 1 cut(s) 51
BcnI CCSGG 1 cut(s) 339
BfaI CTAG 1 cut(s) 364
BisI GCNGC 1 cut(s) 273
BlsI GCNGC 1 cut(s) 274
Bme1390I CCNGG 2 cut(s) 327, 339
BmgT120I GGNCC 1 cut(s) 315
BmrFI CCNGG 2 cut(s) 327, 339
BmsI GCATC 2 cut(s) 73, 242
BpiI GAAGAC 1 cut(s) 312
BpmI CTGGAG 1 cut(s) 309
BpuMI CCSGG 1 cut(s) 339
BsaJI CCNNGG 1 cut(s) 337
Bsc4I CCNNNNNNNGG 4 cut(s) 251, 254, 296, 344
BseBI CCWGG 1 cut(s) 327
BseDI CCNNGG 1 cut(s) 337
BseLI CCNNNNNNNGG 4 cut(s) 251, 254, 296, 344
BseXI GCAGC 1 cut(s) 284
BshFI GGCC 2 cut(s) 91, 316
BsiSI CCGG 1 cut(s) 339
BslI CCNNNNNNNGG 4 cut(s) 251, 254, 296, 344
BsnI GGCC 2 cut(s) 91, 316
Bsp143I GATC 2 cut(s) 51, 175
BspACI CCGC 2 cut(s) 239, 291
BspANI GGCC 2 cut(s) 91, 316
BssECI CCNNGG 1 cut(s) 337
BssMI GATC 2 cut(s) 51, 175
Bst2UI CCWGG 1 cut(s) 327
Bst4CI ACNGT 1 cut(s) 226
BstKTI GATC 2 cut(s) 54, 178
BstMBI GATC 2 cut(s) 51, 175
BstNI CCWGG 1 cut(s) 327
BstSCI CCNGG 2 cut(s) 325, 337
BstV1I GCAGC 1 cut(s) 284
BstV2I GAAGAC 1 cut(s) 312
BsuRI GGCC 2 cut(s) 91, 316
Cfr13I GGNCC 1 cut(s) 315
CspCI CAANNNNNGTGG 2 cut(s) 210, 245
CviAII CATG 2 cut(s) 63, 194
CviJI RGCY 8 cut(s) 5, 76, 91, 215, 283, 316, 323, 336
CviKI_1 RGCY 8 cut(s) 5, 76, 91, 215, 283, 316, 323, 336
DpnI GATC 2 cut(s) 53, 177
DpnII GATC 2 cut(s) 51, 175
DraI TTTAAA 1 cut(s) 9
DraIII CACNNNGTG 1 cut(s) 254
EciI GGCGGA 1 cut(s) 228
Eco147I AGGCCT 1 cut(s) 91
Eco57I CTGAAG 2 cut(s) 231, 295
EcoRI GAATTC 1 cut(s) 97
EcoRII CCWGG 1 cut(s) 325
FaeI CATG 2 cut(s) 66, 197
FaiI YATR 3 cut(s) 64, 180, 195
FalI AAGNNNNNCTT 1 cut(s) 37
FatI CATG 2 cut(s) 62, 193
FauI CCCGC 1 cut(s) 298
FbaI TGATCA 1 cut(s) 51
Fnu4HI GCNGC 1 cut(s) 273
Fsp4HI GCNGC 1 cut(s) 273
FspBI CTAG 1 cut(s) 364
GluI GCNGC 1 cut(s) 273
GsuI CTGGAG 1 cut(s) 309
HaeIII GGCC 2 cut(s) 91, 316
HapII CCGG 1 cut(s) 339
Hin1II CATG 2 cut(s) 66, 197
HincII GTYRAC 1 cut(s) 18
HindII GTYRAC 1 cut(s) 18
HindIII AAGCTT 1 cut(s) 213
HpaI GTTAAC 1 cut(s) 18
HpaII CCGG 1 cut(s) 339
Hpy166II GTNNAC 1 cut(s) 18
Hpy188I TCNGA 1 cut(s) 122
Hpy8I GTNNAC 1 cut(s) 18
HpyAV CCTTC 1 cut(s) 31
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4V TGCA 1 cut(s) 86
Hsp92II CATG 2 cut(s) 66, 197
Ksp22I TGATCA 1 cut(s) 51
KspAI GTTAAC 1 cut(s) 18
Kzo9I GATC 2 cut(s) 51, 175
LmnI GCTCC 1 cut(s) 328
LpnPI CCDG 5 cut(s) 245, 298, 312, 339, 352
Lsp1109I GCAGC 1 cut(s) 284
LweI GCATC 2 cut(s) 73, 242
MaeI CTAG 1 cut(s) 364
MaeIII GTNAC 1 cut(s) 329
MalI GATC 2 cut(s) 53, 177
MboI GATC 2 cut(s) 51, 175
MboII GAAGA 1 cut(s) 317
MluCI AATT 2 cut(s) 97, 124
MmeI TCCRAC 2 cut(s) 141, 325
MnlI CCTC 2 cut(s) 252, 297
MseI TTAA 4 cut(s) 8, 17, 59, 183
MslI CAYNNNNRTG 1 cut(s) 183
MspI CCGG 1 cut(s) 339
MspR9I CCNGG 2 cut(s) 327, 339
MvaI CCWGG 1 cut(s) 327
NciI CCSGG 1 cut(s) 339
NdeII GATC 2 cut(s) 51, 175
NlaIII CATG 2 cut(s) 66, 197
NmuCI GTSAC 1 cut(s) 329
PceI AGGCCT 1 cut(s) 91
PflMI CCANNNNNTGG 1 cut(s) 254
PkrI GCNGC 1 cut(s) 274
PshBI ATTAAT 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 325
PspGI CCWGG 1 cut(s) 325
PspPI GGNCC 1 cut(s) 315
RseI CAYNNNNRTG 1 cut(s) 183
SaqAI TTAA 4 cut(s) 8, 17, 59, 183
SatI GCNGC 1 cut(s) 273
Sau3AI GATC 2 cut(s) 51, 175
Sau96I GGNCC 1 cut(s) 315
ScrFI CCNGG 2 cut(s) 327, 339
SetI ASST 7 cut(s) 23, 217, 256, 264, 289, 325, 331
SfaNI GCATC 2 cut(s) 73, 242
SmiMI CAYNNNNRTG 1 cut(s) 183
Sse9I AATT 2 cut(s) 97, 124
SseBI AGGCCT 1 cut(s) 91
SsiI CCGC 2 cut(s) 239, 291
SspMI CTAG 1 cut(s) 364
StuI AGGCCT 1 cut(s) 91
StyD4I CCNGG 2 cut(s) 325, 337
TaaI ACNGT 1 cut(s) 226
TasI AATT 2 cut(s) 97, 124
Tru1I TTAA 4 cut(s) 8, 17, 59, 183
Tru9I TTAA 4 cut(s) 8, 17, 59, 183
TseFI GTSAC 1 cut(s) 329
TseI GCWGC 1 cut(s) 272
Tsp45I GTSAC 1 cut(s) 329
TspDTI ATGAA 2 cut(s) 13, 182
Van91I CCANNNNNTGG 1 cut(s) 254
VspI ATTAAT 1 cut(s) 183
XapI RAATTY 2 cut(s) 97, 124
XspI CTAG 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.