FvH4_1g16270

Transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0015241
Physical Location & Seq
Forward (+)
9347970 .. 9349370
1401 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g16270.t1

Sequence Viewer

Length: 1194 bp
ATGCAAGTACAAATCTCCGACACCACCGTCGTCGTTCCCTCCACACCCCCGTTTTCCGACGACCACATCCTCCCACTCACCCACCTCGACAATGACGCCAACCTCCGCGTCACCTTCCGTTACGTCACCACCACCAACTCCTCCTCTGACCCTTTCCACGTCCTCTCCGCCGCGCTTGTCCACTACTACCCTCTCGCCGCCTCCCTCCGCCGCCGCCGCGACAACCGCCTCGAGCTCTTCTGCTCCGTCGGCCAGGGTGTCCTGCTCATACGCGCCTCCGTCGAGTCAACCACCCTCTACTCGGTGAGTCAACTCAACGACGCGGACACGCAGTTTCTCGAGCAGTTGGTACCCGACCCCGACCCGAATCAATCCATGGAGTATCCTTGTGTGTTGCAAGTCACTGTGTTCAAATGCGGCGGGTACGCCCTCGGAGCCGCCATAAGCCATTCATTGTGTGACGGAATGGGCGCCACTCAGTTCTTCAACGCCATGGCGGAGTTGGCTCGCGGGTCGGGTCAGATTTCGCTTCACCCGATATGGGAAAGATCGGTTAAGGACGAGTCTGTTGAGAAATTCAAAACCAATTTATTGAAGCAATCCGGTTTGAGCTTCACCACTTTCGAAGCTGTGGGTGCTTATATATGGCGAGCCAAGGTGAAATCGTCGGAGATTTCAATGGATGAAACGGTCACGTTTGGGTATGCACTGAATGTTCGGAAGCTAGTGAACCCTCCATTGCCAACAGGGTATTGGGGGAATGGTTGCATTGCTATATACGTAAAGTTGAGTGCCAAGGAGTTGGTGGAAAAGCCAATGTGGGAAGTTGCTGATCGGATCAAGAAGAGCAAGAGCAATGCGACTGATGAGTATGTGAGGTCGTTTATTGACTTTCAAGAGCTGCATTACAACGAGGGAATCAATGCTGGAAAAGAAGTGAGTGGCTTCACGGATTGGAGGCACTTGCGGCACTCGACGGTTGATTTTAGGTGGGGAGGGCCTGTGACTGTACTACCGCTTTCAAGGAACTTGCTTGGGAGTGTTGAGCCTTGCTTTTTCTTGCCTGGTTCCGGAAGCAATGGAAAGAAAGATGGGTTCAAGCTTATGGTGAATCTGAGGGAGACTGCTATGCCTGGTTTTAGAAAGGAGATGGACAAGTTTAGCAGCCAAGAACTTGGATTGTCCTTGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

398

Amino Acids

44.19

Weight (kDa)

6.33

Isoelectric Point (pI)

32.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 1 - 184 2e-31 Transferase family
Transferase PF02458 190 - 385 2.7e-32 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015241)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G28680 AT1G28680
fragaria_vesca FvH4_1g16270 FvH4_3g08120
malus_domestica MD10G1283900.v1.1
prunus_persica Prupe.4G057600_v2.0.a1
pyrus_communis pycom10g23680
rosa_chinensis RchiOBHm_Chr5g0010101
rosa_laevigata RLG00000031725
rosa_multiflora Rmu_sc0002275.1_g000013
rosa_roxburghii Rroxscaffold_1G00066080
rosa_rugosa Rorug04G0449100
rosa_samantha Rh5AG079900 Rh5BG074700 Rh5DG075400
rosa_wichuraiana Rw5G007400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 26
Acc65I GGTACC 1 cut(s) 349
AccB1I GGYRCC 2 cut(s) 349, 470
AccII CGCG 6 cut(s) 108, 173, 219, 273, 323, 510
AccIII TCCGGA 1 cut(s) 1070
AclWI GGATC 1 cut(s) 845
AcoI YGGCCR 1 cut(s) 250
AcsI RAATTY 1 cut(s) 575
AcyI GRCGYC 2 cut(s) 96, 471
AfaI GTAC 4 cut(s) 9, 351, 425, 1011
AfiI CCNNNNNNNGG 3 cut(s) 301, 541, 1070
AgsI TTSAA 8 cut(s) 412, 487, 580, 595, 678, 896, 1023, 1099
AjiI CACGTC 1 cut(s) 160
AjnI CCWGG 3 cut(s) 252, 1063, 1132
AluBI AGCT 6 cut(s) 235, 612, 629, 724, 901, 1102
AluI AGCT 6 cut(s) 235, 612, 629, 724, 901, 1102
Alw21I GWGCWC 1 cut(s) 237
Alw26I GTCTC 1 cut(s) 1115
AlwI GGATC 1 cut(s) 845
Ama87I CYCGRG 2 cut(s) 230, 338
Aor13HI TCCGGA 1 cut(s) 1070
AoxI GGCC 2 cut(s) 250, 998
ApeKI GCWGC 2 cut(s) 901, 1164
ApoI RAATTY 1 cut(s) 575
Asp718I GGTACC 1 cut(s) 349
AspLEI GCGC 3 cut(s) 175, 275, 473
AspS9I GGNCC 1 cut(s) 998
AsuHPI GGTGA 8 cut(s) 70, 103, 118, 316, 524, 607, 670, 1120
AsuII TTCGAA 1 cut(s) 624
AvaI CYCGRG 2 cut(s) 230, 338
BanI GGYRCC 2 cut(s) 349, 470
BanII GRGCYC 1 cut(s) 237
Bbv12I GWGCWC 1 cut(s) 237
BbvI GCAGC 2 cut(s) 888, 1176
BccI CCATC 2 cut(s) 1085, 1144
BciT130I CCWGG 3 cut(s) 254, 1065, 1134
BciVI GTATCC 1 cut(s) 393
BcoDI GTCTC 1 cut(s) 1115
BfaI CTAG 1 cut(s) 725
BfoI RGCGCY 1 cut(s) 474
BfuI GTATCC 1 cut(s) 393
Bme1390I CCNGG 3 cut(s) 254, 1065, 1134
BmeT110I CYCGRG 2 cut(s) 230, 338
BmgBI CACGTC 1 cut(s) 160
BmgT120I GGNCC 1 cut(s) 998
BmiI GGNNCC 4 cut(s) 351, 436, 472, 1069
BmrFI CCNGG 3 cut(s) 254, 1065, 1134
Bpu14I TTCGAA 1 cut(s) 624
BsaAI YACGTR 1 cut(s) 781
BsaHI GRCGYC 2 cut(s) 96, 471
BsaJI CCNNGG 6 cut(s) 253, 375, 430, 492, 654, 795
BsaWI WCCGGW 2 cut(s) 602, 1070
BsaXI ACNNNNNCTCC 4 cut(s) 149, 179, 987, 1017
Bsc4I CCNNNNNNNGG 3 cut(s) 301, 541, 1070
Bse3DI GCAATG 4 cut(s) 737, 768, 862, 1084
BseAI TCCGGA 1 cut(s) 1070
BseBI CCWGG 3 cut(s) 254, 1065, 1134
BseDI CCNNGG 6 cut(s) 253, 375, 430, 492, 654, 795
BseGI GGATG 2 cut(s) 66, 688
BseLI CCNNNNNNNGG 3 cut(s) 301, 541, 1070
BseMI GCAATG 4 cut(s) 737, 768, 862, 1084
BseMII CTCAG 2 cut(s) 491, 1106
BseRI GAGGAG 2 cut(s) 130, 133
BseXI GCAGC 2 cut(s) 888, 1176
Bsh1236I CGCG 6 cut(s) 108, 173, 219, 273, 323, 510
BshFI GGCC 2 cut(s) 252, 1000
BshNI GGYRCC 2 cut(s) 349, 470
BsiHKAI GWGCWC 1 cut(s) 237
BsiHKCI CYCGRG 2 cut(s) 230, 338
BsiSI CCGG 2 cut(s) 603, 1071
BslI CCNNNNNNNGG 3 cut(s) 301, 541, 1070
BsmAI GTCTC 1 cut(s) 1115
BsnI GGCC 2 cut(s) 252, 1000
BsoBI CYCGRG 2 cut(s) 230, 338
Bsp119I TTCGAA 1 cut(s) 624
Bsp1286I GDGCHC 1 cut(s) 237
Bsp13I TCCGGA 1 cut(s) 1070
Bsp143I GATC 3 cut(s) 548, 832, 837
Bsp19I CCATGG 2 cut(s) 375, 492
BspANI GGCC 2 cut(s) 252, 1000
BspCNI CTCAG 2 cut(s) 490, 1107
BspEI TCCGGA 1 cut(s) 1070
BspFNI CGCG 6 cut(s) 108, 173, 219, 273, 323, 510
BspLI GGNNCC 4 cut(s) 351, 436, 472, 1069
BspPI GGATC 1 cut(s) 845
BspQI GCTCTTC 2 cut(s) 242, 839
BspT104I TTCGAA 1 cut(s) 624
BspT107I GGYRCC 2 cut(s) 349, 470
BsrDI GCAATG 4 cut(s) 737, 768, 862, 1084
BssECI CCNNGG 6 cut(s) 253, 375, 430, 492, 654, 795
BssMI GATC 3 cut(s) 548, 832, 837
BssNI GRCGYC 2 cut(s) 96, 471
BssT1I CCWWGG 4 cut(s) 375, 492, 654, 795
Bst2UI CCWGG 3 cut(s) 254, 1065, 1134
Bst4CI ACNGT 5 cut(s) 28, 406, 691, 979, 1009
Bst6I CTCTTC 2 cut(s) 242, 839
BstACI GRCGYC 2 cut(s) 96, 471
BstBAI YACGTR 1 cut(s) 781
BstBI TTCGAA 1 cut(s) 624
BstC8I GCNNGC 2 cut(s) 508, 651
BstDEI CTNAG 2 cut(s) 477, 1115
BstDSI CCRYGG 2 cut(s) 375, 492
BstF5I GGATG 2 cut(s) 66, 688
BstFNI CGCG 6 cut(s) 108, 173, 219, 273, 323, 510
BstH2I RGCGCY 1 cut(s) 474
BstHHI GCGC 3 cut(s) 175, 275, 473
BstKTI GATC 3 cut(s) 551, 835, 840
BstMAI GTCTC 1 cut(s) 1115
BstMBI GATC 3 cut(s) 548, 832, 837
BstMWI GCNNNNNNNGC 7 cut(s) 216, 225, 249, 434, 503, 635, 967
BstNI CCWGG 3 cut(s) 254, 1065, 1134
BstSCI CCNGG 3 cut(s) 252, 1063, 1132
BstSNI TACGTA 1 cut(s) 781
BstUI CGCG 6 cut(s) 108, 173, 219, 273, 323, 510
BstV1I GCAGC 2 cut(s) 888, 1176
BstXI CCANNNNNNTGG 2 cut(s) 802, 1175
BsuI GTATCC 1 cut(s) 393
BsuRI GGCC 2 cut(s) 252, 1000
BtgI CCRYGG 2 cut(s) 375, 492
BtrI CACGTC 1 cut(s) 160
BtsCI GGATG 2 cut(s) 66, 688
BtsIMutI CAGTG 2 cut(s) 402, 707
Cac8I GCNNGC 2 cut(s) 508, 651
CfoI GCGC 3 cut(s) 175, 275, 473
Cfr13I GGNCC 1 cut(s) 998
CseI GACGC 3 cut(s) 97, 104, 329
Csp6I GTAC 4 cut(s) 8, 350, 424, 1010
CviAII CATG 2 cut(s) 376, 493
CviQI GTAC 4 cut(s) 8, 350, 424, 1010
DdeI CTNAG 2 cut(s) 477, 1115
DinI GGCGCC 1 cut(s) 472
DpnI GATC 3 cut(s) 550, 834, 839
DpnII GATC 3 cut(s) 548, 832, 837
DrdI GACNNNNNNGTC 1 cut(s) 26
DseDI GACNNNNNNGTC 1 cut(s) 26
EaeI YGGCCR 1 cut(s) 250
Eam1104I CTCTTC 2 cut(s) 242, 839
EarI CTCTTC 2 cut(s) 242, 839
EciI GGCGGA 3 cut(s) 157, 197, 512
Ecl136II GAGCTC 1 cut(s) 235
Eco105I TACGTA 1 cut(s) 781
Eco130I CCWWGG 4 cut(s) 375, 492, 654, 795
Eco24I GRGCYC 1 cut(s) 237
Eco53kI GAGCTC 1 cut(s) 235
Eco88I CYCGRG 2 cut(s) 230, 338
EcoICRI GAGCTC 1 cut(s) 235
EcoO109I RGGNCCY 1 cut(s) 998
EcoRII CCWGG 3 cut(s) 252, 1063, 1132
EcoT14I CCWWGG 4 cut(s) 375, 492, 654, 795
EcoT38I GRGCYC 1 cut(s) 237
EgeI GGCGCC 1 cut(s) 472
EheI GGCGCC 1 cut(s) 472
ErhI CCWWGG 4 cut(s) 375, 492, 654, 795
FaeI CATG 2 cut(s) 379, 496
FatI CATG 2 cut(s) 375, 492
FauI CCCGC 2 cut(s) 413, 503
FokI GGATG 2 cut(s) 53, 695
FriOI GRGCYC 1 cut(s) 237
FspBI CTAG 1 cut(s) 725
GlaI GCGC 3 cut(s) 174, 274, 472
HaeII RGCGCY 1 cut(s) 474
HaeIII GGCC 2 cut(s) 252, 1000
HapII CCGG 2 cut(s) 603, 1071
HgaI GACGC 3 cut(s) 97, 104, 329
HhaI GCGC 3 cut(s) 175, 275, 473
Hin1I GRCGYC 2 cut(s) 96, 471
Hin1II CATG 2 cut(s) 379, 496
Hin6I GCGC 3 cut(s) 173, 273, 471
HinP1I GCGC 3 cut(s) 173, 273, 471
HincII GTYRAC 2 cut(s) 288, 311
HindII GTYRAC 2 cut(s) 288, 311
HindIII AAGCTT 1 cut(s) 1100
HinfI GANTC 6 cut(s) 284, 307, 367, 563, 918, 1111
HpaII CCGG 2 cut(s) 603, 1071
HphI GGTGA 8 cut(s) 70, 103, 118, 316, 524, 607, 670, 1120
Hpy166II GTNNAC 4 cut(s) 181, 288, 311, 730
Hpy188I TCNGA 9 cut(s) 19, 58, 148, 434, 522, 670, 720, 837, 1116
Hpy188III TCNNGA 4 cut(s) 338, 841, 896, 1071
Hpy8I GTNNAC 4 cut(s) 181, 288, 311, 730
Hpy99I CGWCG 8 cut(s) 32, 35, 62, 251, 284, 323, 670, 979
HpyAV CCTTC 1 cut(s) 124
HpyCH4III ACNGT 5 cut(s) 28, 406, 691, 979, 1009
HpyCH4IV ACGT 4 cut(s) 123, 159, 695, 780
HpyCH4V TGCA 5 cut(s) 4, 397, 707, 768, 904
HpyF10VI GCNNNNNNNGC 7 cut(s) 216, 225, 249, 434, 503, 635, 967
HpyF3I CTNAG 2 cut(s) 477, 1115
HpySE526I ACGT 4 cut(s) 123, 159, 695, 780
Hsp92I GRCGYC 2 cut(s) 96, 471
Hsp92II CATG 2 cut(s) 379, 496
HspAI GCGC 3 cut(s) 173, 273, 471
KasI GGCGCC 1 cut(s) 470
Kpn2I TCCGGA 1 cut(s) 1070
KpnI GGTACC 1 cut(s) 353
Kzo9I GATC 3 cut(s) 548, 832, 837
LguI GCTCTTC 2 cut(s) 242, 839
LmnI GCTCC 2 cut(s) 248, 434
Lsp1109I GCAGC 2 cut(s) 888, 1176
MaeI CTAG 1 cut(s) 725
MaeII ACGT 4 cut(s) 123, 159, 695, 780
MaeIII GTNAC 7 cut(s) 109, 119, 124, 400, 458, 691, 1003
MalI GATC 3 cut(s) 550, 834, 839
MboI GATC 3 cut(s) 548, 832, 837
MboII GAAGA 3 cut(s) 229, 475, 856
MhlI GDGCHC 1 cut(s) 237
MluCI AATT 2 cut(s) 575, 586
Mly113I GGCGCC 1 cut(s) 471
MlyI GAGTC 3 cut(s) 293, 316, 572
MmeI TCCRAC 3 cut(s) 42, 81, 648
MroI TCCGGA 1 cut(s) 1070
MseI TTAA 1 cut(s) 555
MspI CCGG 2 cut(s) 603, 1071
MspR9I CCNGG 3 cut(s) 254, 1065, 1134
MvaI CCWGG 3 cut(s) 254, 1065, 1134
MvnI CGCG 6 cut(s) 108, 173, 219, 273, 323, 510
MwoI GCNNNNNNNGC 7 cut(s) 216, 225, 249, 434, 503, 635, 967
NarI GGCGCC 1 cut(s) 471
NcoI CCATGG 2 cut(s) 375, 492
NdeII GATC 3 cut(s) 548, 832, 837
NlaIII CATG 2 cut(s) 379, 496
NlaIV GGNNCC 4 cut(s) 351, 436, 472, 1069
NmuCI GTSAC 6 cut(s) 109, 124, 400, 458, 691, 1003
NspV TTCGAA 1 cut(s) 624
PaeR7I CTCGAG 2 cut(s) 230, 338
PciSI GCTCTTC 2 cut(s) 242, 839
PcsI WCGNNNNNNNCGW 1 cut(s) 533
PfeI GAWTC 3 cut(s) 367, 918, 1111
PleI GAGTC 3 cut(s) 292, 315, 571
PluTI GGCGCC 1 cut(s) 474
PpsI GAGTC 3 cut(s) 292, 315, 571
Ppu21I YACGTR 1 cut(s) 781
Psp124BI GAGCTC 1 cut(s) 237
Psp6I CCWGG 3 cut(s) 252, 1063, 1132
PspGI CCWGG 3 cut(s) 252, 1063, 1132
PspN4I GGNNCC 4 cut(s) 351, 436, 472, 1069
PspPI GGNCC 1 cut(s) 998
PspXI VCTCGAGB 1 cut(s) 230
RsaI GTAC 4 cut(s) 9, 351, 425, 1011
RsaNI GTAC 4 cut(s) 8, 350, 424, 1010
SacI GAGCTC 1 cut(s) 237
SapI GCTCTTC 2 cut(s) 242, 839
SaqAI TTAA 1 cut(s) 555
Sau3AI GATC 3 cut(s) 548, 832, 837
Sau96I GGNCC 1 cut(s) 998
SchI GAGTC 3 cut(s) 293, 316, 572
ScrFI CCNGG 3 cut(s) 254, 1065, 1134
SduI GDGCHC 1 cut(s) 237
SfoI GGCGCC 1 cut(s) 472
Sfr274I CTCGAG 2 cut(s) 230, 338
SfuI TTCGAA 1 cut(s) 624
SlaI CTCGAG 2 cut(s) 230, 338
SmlI CTYRAG 2 cut(s) 230, 338
SmoI CTYRAG 2 cut(s) 230, 338
SnaBI TACGTA 1 cut(s) 781
Sse9I AATT 2 cut(s) 575, 586
SspDI GGCGCC 1 cut(s) 470
SspMI CTAG 1 cut(s) 725
SstI GAGCTC 1 cut(s) 237
StyD4I CCNGG 3 cut(s) 252, 1063, 1132
StyI CCWWGG 4 cut(s) 375, 492, 654, 795
TaaI ACNGT 5 cut(s) 28, 406, 691, 979, 1009
TaiI ACGT 4 cut(s) 126, 162, 698, 783
TaqI TCGA 6 cut(s) 87, 231, 282, 339, 624, 974
TasI AATT 2 cut(s) 575, 586
TatI WGTACW 2 cut(s) 7, 1009
TauI GCSGC 8 cut(s) 173, 200, 213, 216, 219, 420, 440, 970
TfiI GAWTC 3 cut(s) 367, 918, 1111
Tru1I TTAA 1 cut(s) 555
Tru9I TTAA 1 cut(s) 555
TscAI CASTG 2 cut(s) 409, 714
TseFI GTSAC 6 cut(s) 109, 124, 400, 458, 691, 1003
TseI GCWGC 2 cut(s) 901, 1164
Tsp45I GTSAC 6 cut(s) 109, 124, 400, 458, 691, 1003
TspDTI ATGAA 2 cut(s) 441, 699
TspGWI ACGGA 5 cut(s) 107, 235, 268, 477, 965
TspRI CASTG 2 cut(s) 409, 714
XapI RAATTY 1 cut(s) 575
XcmI CCANNNNNNNNNTGG 3 cut(s) 499, 750, 802
XhoI CTCGAG 2 cut(s) 230, 338
XspI CTAG 1 cut(s) 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.