FvH4_1g27611

Acyl-coenzyme A oxidase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
19257981 .. 19259482
1502 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g27611.t1

Sequence Viewer

Length: 264 bp
ATGCTGTTGATATCATCACTAGACACTGCATCAGTACAGACGAAAGAGATATTGACCAGTGTAGATATATGTTCTGTTGATATCGACAATGACAGGAAAATGCTGAAGTTCCCCGCAGCAAGGCAGCTCACTGGCTTAGTGAGGGAGCCTGGGATCAAGCCATTCCGCTACGTTGTTGTGGATCCGGCGAAGTACTTCACGATTATAAAAGTTGTGGGCAGCGTGGACATGTCGCTTGGGATCAAGATGAAGAGAGAGAGATGA

Protein Analysis

88

Amino Acids

9.76

Weight (kDa)

9.46

Isoelectric Point (pI)

26.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0024005)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27611
rosa_multiflora Rmu_co8098978.1_g000001 Rmu_sc0000784.1_g000028

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 206
AciI CCGC 2 cut(s) 114, 166
AclWI GGATC 4 cut(s) 161, 176, 189, 248
AcuI CTGAAG 1 cut(s) 125
AfaI GTAC 2 cut(s) 36, 194
AfiI CCNNNNNNNGG 1 cut(s) 120
AflIII ACRYGT 1 cut(s) 228
AjnI CCWGG 1 cut(s) 148
AluBI AGCT 1 cut(s) 127
AluI AGCT 1 cut(s) 127
AlwI GGATC 4 cut(s) 161, 176, 189, 248
ApeKI GCWGC 3 cut(s) 116, 124, 219
Asp700I GAANNNNTTC 1 cut(s) 194
BamHI GGATCC 1 cut(s) 181
BbvI GCAGC 3 cut(s) 128, 136, 231
BciT130I CCWGG 1 cut(s) 150
BfaI CTAG 1 cut(s) 20
BisI GCNGC 3 cut(s) 117, 125, 220
BlsI GCNGC 3 cut(s) 118, 126, 221
BmcAI AGTACT 1 cut(s) 194
Bme1390I CCNGG 1 cut(s) 150
BmiI GGNNCC 2 cut(s) 147, 183
BmrFI CCNGG 1 cut(s) 150
BmsI GCATC 1 cut(s) 38
BsaJI CCNNGG 1 cut(s) 149
Bsc4I CCNNNNNNNGG 1 cut(s) 120
Bse1I ACTGG 2 cut(s) 57, 136
BseBI CCWGG 1 cut(s) 150
BseDI CCNNGG 1 cut(s) 149
BseLI CCNNNNNNNGG 1 cut(s) 120
BseNI ACTGG 2 cut(s) 57, 136
BseXI GCAGC 3 cut(s) 128, 136, 231
BsiSI CCGG 1 cut(s) 185
BslI CCNNNNNNNGG 1 cut(s) 120
Bsp143I GATC 3 cut(s) 153, 181, 240
BspACI CCGC 2 cut(s) 114, 166
BspLI GGNNCC 2 cut(s) 147, 183
BspPI GGATC 4 cut(s) 161, 176, 189, 248
BsrI ACTGG 2 cut(s) 57, 136
BssECI CCNNGG 1 cut(s) 149
BssMI GATC 3 cut(s) 153, 181, 240
Bst2UI CCWGG 1 cut(s) 150
Bst6I CTCTTC 1 cut(s) 245
BstDEI CTNAG 1 cut(s) 136
BstKTI GATC 3 cut(s) 156, 184, 243
BstMBI GATC 3 cut(s) 153, 181, 240
BstNI CCWGG 1 cut(s) 150
BstNSI RCATGY 1 cut(s) 232
BstSCI CCNGG 1 cut(s) 148
BstV1I GCAGC 3 cut(s) 128, 136, 231
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 3 cut(s) 24, 64, 129
Csp6I GTAC 2 cut(s) 35, 193
CviAII CATG 1 cut(s) 229
CviJI RGCY 4 cut(s) 127, 135, 148, 160
CviKI_1 RGCY 4 cut(s) 127, 135, 148, 160
CviQI GTAC 2 cut(s) 35, 193
DdeI CTNAG 1 cut(s) 136
DpnI GATC 3 cut(s) 155, 183, 242
DpnII GATC 3 cut(s) 153, 181, 240
Eam1104I CTCTTC 1 cut(s) 245
EarI CTCTTC 1 cut(s) 245
Eco32I GATATC 2 cut(s) 12, 82
Eco57I CTGAAG 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 148
EcoRV GATATC 2 cut(s) 12, 82
FaeI CATG 1 cut(s) 232
FaiI YATR 4 cut(s) 68, 70, 206, 230
FatI CATG 1 cut(s) 228
FauI CCCGC 1 cut(s) 121
Fnu4HI GCNGC 3 cut(s) 117, 125, 220
Fsp4HI GCNGC 3 cut(s) 117, 125, 220
FspBI CTAG 1 cut(s) 20
GluI GCNGC 3 cut(s) 117, 125, 220
HapII CCGG 1 cut(s) 185
Hin1II CATG 1 cut(s) 232
HpaII CCGG 1 cut(s) 185
Hpy166II GTNNAC 1 cut(s) 226
Hpy188III TCNNGA 2 cut(s) 199, 244
Hpy8I GTNNAC 1 cut(s) 226
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 1 cut(s) 29
HpyF3I CTNAG 1 cut(s) 136
HpySE526I ACGT 1 cut(s) 171
Hsp92II CATG 1 cut(s) 232
Kzo9I GATC 3 cut(s) 153, 181, 240
LmnI GCTCC 1 cut(s) 145
LpnPI CCDG 6 cut(s) 70, 79, 117, 135, 162, 198
Lsp1109I GCAGC 3 cut(s) 128, 136, 231
LweI GCATC 1 cut(s) 38
MaeI CTAG 1 cut(s) 20
MaeII ACGT 1 cut(s) 171
MalI GATC 3 cut(s) 155, 183, 242
MboI GATC 3 cut(s) 153, 181, 240
MboII GAAGA 1 cut(s) 262
MflI RGATCY 1 cut(s) 181
MnlI CCTC 1 cut(s) 135
MroXI GAANNNNTTC 1 cut(s) 194
MspI CCGG 1 cut(s) 185
MspR9I CCNGG 1 cut(s) 150
MvaI CCWGG 1 cut(s) 150
NdeII GATC 3 cut(s) 153, 181, 240
NlaIII CATG 1 cut(s) 232
NlaIV GGNNCC 2 cut(s) 147, 183
NspI RCATGY 1 cut(s) 232
PciI ACATGT 1 cut(s) 228
PdmI GAANNNNTTC 1 cut(s) 194
PkrI GCNGC 3 cut(s) 118, 126, 221
PscI ACATGT 1 cut(s) 228
PsiI TTATAA 1 cut(s) 206
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
PspN4I GGNNCC 2 cut(s) 147, 183
PsuI RGATCY 1 cut(s) 181
RsaI GTAC 2 cut(s) 36, 194
RsaNI GTAC 2 cut(s) 35, 193
SatI GCNGC 3 cut(s) 117, 125, 220
Sau3AI GATC 3 cut(s) 153, 181, 240
ScaI AGTACT 1 cut(s) 194
ScrFI CCNGG 1 cut(s) 150
SetI ASST 2 cut(s) 129, 174
SfaNI GCATC 1 cut(s) 38
SsiI CCGC 2 cut(s) 114, 166
SspMI CTAG 1 cut(s) 20
StyD4I CCNGG 1 cut(s) 148
TaiI ACGT 1 cut(s) 174
TaqI TCGA 1 cut(s) 84
TatI WGTACW 2 cut(s) 34, 192
TscAI CASTG 3 cut(s) 31, 64, 136
TseI GCWGC 3 cut(s) 116, 124, 219
TspDTI ATGAA 1 cut(s) 263
TspRI CASTG 3 cut(s) 31, 64, 136
XceI RCATGY 1 cut(s) 232
XmnI GAANNNNTTC 1 cut(s) 194
XspI CTAG 1 cut(s) 20
ZrmI AGTACT 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.