Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8098978.1

Orthogroup ID

OG0024005

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 297

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8098978.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

aagctcaacgtggacacgaagagtctgtcgagctacatgagaggaaagcacagggaaatccaagataaggttatggactacttcaacaacaggcctgaccttcagactccggtggagattttgaaggacgatcaccgcgagctttgtatgaggcagcttactggtttggttagggaggccggaatcagaccgttccggtacgtcgtcgaagatccggccaagtactttgcggttctggaagccgtgggcggcgtcgacatgtcgcttgggatcaagatgggggtgcagtacaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001676 GO:0003674 GO:0003824 GO:0003995 GO:0003997 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016491 GO:0016627 GO:0016634 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0033539 GO:0034440 GO:0036094 GO:0042579 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0071704 GO:0072329 GO:0097159 GO:1901265 GO:1901363 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00071 ko00592 ko01040 ko01100 ko01110 ko01212 ko03320 ko04024 ko04146 map00071 map00592 map01040 map01100 map01110 map01212 map03320 map04024 map04146

Pfam Domains

Protein Families

ACOX Acyl-CoA_dh_1 Acyl-CoA_dh_M

Protein Analysis

98

Amino Acids

11.35

Weight (kDa)

8.78

Isoelectric Point (pI)

33.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024005)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27611
rosa_multiflora	Rmu_co8098978.1_g000001 Rmu_sc0000784.1_g000028

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	255
AccII	CGCG	1 cut(s)	138
AciI	CCGC	3 cut(s)	136, 230, 249
AclWI	GGATC	2 cut(s)	206, 278
AcoI	YGGCCR	1 cut(s)	216
AcuI	CTGAAG	1 cut(s)	86
AcyI	GRCGYC	1 cut(s)	252
AfaI	GTAC	3 cut(s)	200, 224, 290
AfiI	CCNNNNNNNGG	1 cut(s)	67
AflIII	ACRYGT	1 cut(s)	258
AgsI	TTSAA	2 cut(s)	85, 124
AluBI	AGCT	4 cut(s)	4, 33, 142, 157
AluI	AGCT	4 cut(s)	4, 33, 142, 157
AlwI	GGATC	2 cut(s)	206, 278
AoxI	GGCC	3 cut(s)	92, 177, 216
ApeKI	GCWGC	1 cut(s)	154
ArsI	GACNNNNNNTTYG	2 cut(s)	11, 43
AsuHPI	GGTGA	1 cut(s)	125
BbvI	GCAGC	1 cut(s)	166
BccI	CCATC	1 cut(s)	271
BceAI	ACGGC	1 cut(s)	227
BisI	GCNGC	2 cut(s)	155, 250
BlsI	GCNGC	2 cut(s)	156, 251
BmcAI	AGTACT	1 cut(s)	224
BsaHI	GRCGYC	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	243
BsaWI	WCCGGW	2 cut(s)	109, 195
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse1I	ACTGG	1 cut(s)	166
BseDI	CCNNGG	1 cut(s)	243
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseNI	ACTGG	1 cut(s)	166
BseXI	GCAGC	1 cut(s)	166
Bsh1236I	CGCG	1 cut(s)	138
BshFI	GGCC	3 cut(s)	94, 179, 218
BsiSI	CCGG	4 cut(s)	110, 180, 196, 215
BslI	CCNNNNNNNGG	1 cut(s)	67
BsnI	GGCC	3 cut(s)	94, 179, 218
Bsp143I	GATC	3 cut(s)	130, 211, 270
BspACI	CCGC	3 cut(s)	136, 230, 249
BspANI	GGCC	3 cut(s)	94, 179, 218
BspFNI	CGCG	1 cut(s)	138
BspPI	GGATC	2 cut(s)	206, 278
BsrI	ACTGG	1 cut(s)	166
BssECI	CCNNGG	1 cut(s)	243
BssMI	GATC	3 cut(s)	130, 211, 270
BssNI	GRCGYC	1 cut(s)	252
Bst4CI	ACNGT	1 cut(s)	192
Bst6I	CTCTTC	1 cut(s)	14
BstACI	GRCGYC	1 cut(s)	252
BstC8I	GCNNGC	1 cut(s)	140
BstDSI	CCRYGG	1 cut(s)	243
BstFNI	CGCG	1 cut(s)	138
BstKTI	GATC	3 cut(s)	133, 214, 273
BstMBI	GATC	3 cut(s)	130, 211, 270
BstNSI	RCATGY	1 cut(s)	262
BstUI	CGCG	1 cut(s)	138
BstV1I	GCAGC	1 cut(s)	166
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BsuRI	GGCC	3 cut(s)	94, 179, 218
BtgI	CCRYGG	1 cut(s)	243
Cac8I	GCNNGC	1 cut(s)	140
CseI	GACGC	1 cut(s)	241
Csp6I	GTAC	3 cut(s)	199, 223, 289
CviAII	CATG	2 cut(s)	37, 259
CviJI	RGCY	8 cut(s)	4, 33, 94, 142, 157, 179, 218, 242
CviKI_1	RGCY	8 cut(s)	4, 33, 94, 142, 157, 179, 218, 242
CviQI	GTAC	3 cut(s)	199, 223, 289
DpnI	GATC	3 cut(s)	132, 213, 272
DpnII	GATC	3 cut(s)	130, 211, 270
EaeI	YGGCCR	1 cut(s)	216
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
Eco147I	AGGCCT	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	86
FaeI	CATG	2 cut(s)	40, 262
FaiI	YATR	4 cut(s)	38, 74, 149, 260
FatI	CATG	2 cut(s)	36, 258
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	2 cut(s)	155, 250
Fsp4HI	GCNGC	2 cut(s)	155, 250
GluI	GCNGC	2 cut(s)	155, 250
HaeIII	GGCC	3 cut(s)	94, 179, 218
HapII	CCGG	4 cut(s)	110, 180, 196, 215
HgaI	GACGC	1 cut(s)	241
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	2 cut(s)	40, 262
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HinfI	GANTC	3 cut(s)	22, 106, 183
HpaII	CCGG	4 cut(s)	110, 180, 196, 215
HphI	GGTGA	1 cut(s)	125
Hpy166II	GTNNAC	2 cut(s)	13, 256
Hpy188I	TCNGA	2 cut(s)	105, 188
Hpy188III	TCNNGA	2 cut(s)	236, 274
Hpy8I	GTNNAC	2 cut(s)	13, 256
Hpy99I	CGWCG	3 cut(s)	206, 209, 257
HpyAV	CCTTC	2 cut(s)	110, 118
HpyCH4III	ACNGT	1 cut(s)	192
HpyCH4IV	ACGT	2 cut(s)	9, 201
HpyCH4V	TGCA	1 cut(s)	286
HpySE526I	ACGT	2 cut(s)	9, 201
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	2 cut(s)	40, 262
Kzo9I	GATC	3 cut(s)	130, 211, 270
Lsp1109I	GCAGC	1 cut(s)	166
MaeII	ACGT	2 cut(s)	9, 201
MalI	GATC	3 cut(s)	132, 213, 272
MboI	GATC	3 cut(s)	130, 211, 270
MboII	GAAGA	2 cut(s)	31, 221
MflI	RGATCY	1 cut(s)	211
MlyI	GAGTC	2 cut(s)	31, 100
MnlI	CCTC	3 cut(s)	35, 144, 169
MspI	CCGG	4 cut(s)	110, 180, 196, 215
MvnI	CGCG	1 cut(s)	138
NdeII	GATC	3 cut(s)	130, 211, 270
NlaIII	CATG	2 cut(s)	40, 262
NspI	RCATGY	1 cut(s)	262
PceI	AGGCCT	1 cut(s)	94
PciI	ACATGT	1 cut(s)	258
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	183
PkrI	GCNGC	2 cut(s)	156, 251
PleI	GAGTC	2 cut(s)	30, 100
PpsI	GAGTC	2 cut(s)	30, 100
PscI	ACATGT	1 cut(s)	258
PsuI	RGATCY	1 cut(s)	211
RsaI	GTAC	3 cut(s)	200, 224, 290
RsaNI	GTAC	3 cut(s)	199, 223, 289
SalI	GTCGAC	1 cut(s)	254
SatI	GCNGC	2 cut(s)	155, 250
Sau3AI	GATC	3 cut(s)	130, 211, 270
ScaI	AGTACT	1 cut(s)	224
SchI	GAGTC	2 cut(s)	31, 100
SetI	ASST	9 cut(s)	6, 12, 35, 72, 102, 144, 159, 204, 296
SseBI	AGGCCT	1 cut(s)	94
SsiI	CCGC	3 cut(s)	136, 230, 249
StuI	AGGCCT	1 cut(s)	94
TaaI	ACNGT	1 cut(s)	192
TaiI	ACGT	2 cut(s)	12, 204
TaqI	TCGA	3 cut(s)	29, 207, 255
TatI	WGTACW	2 cut(s)	222, 288
TauI	GCSGC	1 cut(s)	252
TfiI	GAWTC	1 cut(s)	183
TseI	GCWGC	1 cut(s)	154
XceI	RCATGY	1 cut(s)	262
XmiI	GTMKAC	1 cut(s)	255
ZrmI	AGTACT	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.