Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0024008

Physical Location & Seq

Genomic Coordinates Reverse (-)

20903128 .. 20904024

Gene Structure 897 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g28611.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGTCTAACCTGAGTGATCCGGATGAGCTGATTGCAATTAATACCACGGTTTATTGGAGACCGGTCATTGCTGAGACCAGTGTTGTCTTACATGATGTCAATGAACAAGTAAAATCAATGTGGGTTTGTGGGCATAGTGAAAGAGTCGCAGTTACCTTTGCACTAGTCCACACTGCTGCTGGGATGCCAATTAGAATTACAAAGAATATTTGTATTTGTGCAGATAGCCACTCCTGGGTGAAAATAGTTTCAATGGATACAGGTAGAGTCATTGTTTTGAGAGACAAATCGCTTCCACCATTTCAAAGGAGGAGCATGCCCTTTTTACATGAGCAGAAGATTGAGAATCCAAATCACAATTACAAAAAGCAGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

126

Amino Acids

14.23

Weight (kDa)

8.52

Isoelectric Point (pI)

48.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DYW_deaminase	PF14432	24 - 97	5.6e-20	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0024008)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28611
malus_domestica	MD05G1363100.v1.1
rosa_chinensis	RchiOBHm_Chr3g0492561

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	19
AclWI	GGATC	1 cut(s)	11
AfiI	CCNNNNNNNGG	1 cut(s)	235
AgeI	ACCGGT	1 cut(s)	61
AgsI	TTSAA	2 cut(s)	252, 305
AhlI	ACTAGT	1 cut(s)	163
AjnI	CCWGG	1 cut(s)	233
AluBI	AGCT	1 cut(s)	28
AluI	AGCT	1 cut(s)	28
Alw26I	GTCTC	3 cut(s)	52, 68, 276
AlwI	GGATC	1 cut(s)	11
Aor13HI	TCCGGA	1 cut(s)	19
ApeKI	GCWGC	1 cut(s)	176
AseI	ATTAAT	1 cut(s)	39
AsiGI	ACCGGT	1 cut(s)	61
AsuHPI	GGTGA	1 cut(s)	250
BbvI	GCAGC	1 cut(s)	163
BciT130I	CCWGG	1 cut(s)	235
BciVI	GTATCC	1 cut(s)	250
BcoDI	GTCTC	3 cut(s)	52, 68, 276
BcuI	ACTAGT	1 cut(s)	163
BfaI	CTAG	1 cut(s)	164
BfuI	GTATCC	1 cut(s)	250
BisI	GCNGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	178
Bme1390I	CCNGG	1 cut(s)	235
BmrFI	CCNGG	1 cut(s)	235
BmsI	GCATC	1 cut(s)	174
BsaI	GGTCTC	2 cut(s)	52, 68
BsaJI	CCNNGG	2 cut(s)	45, 234
BsaWI	WCCGGW	2 cut(s)	19, 61
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
Bse118I	RCCGGY	1 cut(s)	61
Bse1I	ACTGG	1 cut(s)	78
Bse3DI	GCAATG	1 cut(s)	66
BseAI	TCCGGA	1 cut(s)	19
BseBI	CCWGG	1 cut(s)	235
BseDI	CCNNGG	2 cut(s)	45, 234
BseGI	GGATG	2 cut(s)	28, 189
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	1 cut(s)	78
BseRI	GAGGAG	1 cut(s)	325
BseXI	GCAGC	1 cut(s)	163
BseYI	CCCAGC	1 cut(s)	179
BsgI	GTGCAG	1 cut(s)	240
BshTI	ACCGGT	1 cut(s)	61
BsiSI	CCGG	2 cut(s)	20, 62
BslI	CCNNNNNNNGG	1 cut(s)	235
BsmAI	GTCTC	3 cut(s)	52, 68, 276
Bso31I	GGTCTC	2 cut(s)	52, 68
Bsp13I	TCCGGA	1 cut(s)	19
Bsp143I	GATC	1 cut(s)	16
BspCNI	CTCAG	1 cut(s)	64
BspEI	TCCGGA	1 cut(s)	19
BspHI	TCATGA	1 cut(s)	374
BspPI	GGATC	1 cut(s)	11
BspTNI	GGTCTC	2 cut(s)	52, 68
BsrDI	GCAATG	1 cut(s)	66
BsrFI	RCCGGY	1 cut(s)	61
BsrI	ACTGG	1 cut(s)	78
BssAI	RCCGGY	1 cut(s)	61
BssECI	CCNNGG	2 cut(s)	45, 234
BssMI	GATC	1 cut(s)	16
Bst2UI	CCWGG	1 cut(s)	235
Bst4CI	ACNGT	1 cut(s)	49
BstC8I	GCNNGC	1 cut(s)	317
BstDEI	CTNAG	2 cut(s)	11, 72
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	28, 189
BstKTI	GATC	1 cut(s)	19
BstMAI	GTCTC	3 cut(s)	52, 68, 276
BstMBI	GATC	1 cut(s)	16
BstNI	CCWGG	1 cut(s)	235
BstNSI	RCATGY	1 cut(s)	319
BstSCI	CCNGG	1 cut(s)	233
BstV1I	GCAGC	1 cut(s)	163
BsuI	GTATCC	1 cut(s)	250
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	28, 189
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	2 cut(s)	85, 171
Cac8I	GCNNGC	1 cut(s)	317
CciI	TCATGA	1 cut(s)	374
Cfr10I	RCCGGY	1 cut(s)	61
CspAI	ACCGGT	1 cut(s)	61
CviAII	CATG	4 cut(s)	92, 316, 329, 375
CviJI	RGCY	2 cut(s)	28, 228
CviKI_1	RGCY	2 cut(s)	28, 228
DdeI	CTNAG	2 cut(s)	11, 72
DpnI	GATC	1 cut(s)	18
DpnII	GATC	1 cut(s)	16
Eco31I	GGTCTC	2 cut(s)	52, 68
EcoRII	CCWGG	1 cut(s)	233
FaeI	CATG	4 cut(s)	95, 319, 332, 378
FaiI	YATR	5 cut(s)	93, 135, 317, 330, 376
FatI	CATG	4 cut(s)	91, 315, 328, 374
Fnu4HI	GCNGC	1 cut(s)	177
FokI	GGATG	2 cut(s)	35, 196
Fsp4HI	GCNGC	1 cut(s)	177
FspBI	CTAG	1 cut(s)	164
GluI	GCNGC	1 cut(s)	177
GsaI	CCCAGC	1 cut(s)	183
HapII	CCGG	2 cut(s)	20, 62
Hin1II	CATG	4 cut(s)	95, 319, 332, 378
HinfI	GANTC	3 cut(s)	144, 267, 346
HpaII	CCGG	2 cut(s)	20, 62
HphI	GGTGA	1 cut(s)	250
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188III	TCNNGA	2 cut(s)	20, 375
Hpy8I	GTNNAC	1 cut(s)	169
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4V	TGCA	3 cut(s)	35, 161, 221
HpyF3I	CTNAG	2 cut(s)	11, 72
Hsp92II	CATG	4 cut(s)	95, 319, 332, 378
Kpn2I	TCCGGA	1 cut(s)	19
Kzo9I	GATC	1 cut(s)	16
LmnI	GCTCC	1 cut(s)	312
LpnPI	CCDG	8 cut(s)	23, 33, 75, 91, 165, 220, 246, 247
Lsp1109I	GCAGC	1 cut(s)	163
LweI	GCATC	1 cut(s)	174
MaeI	CTAG	1 cut(s)	164
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	1 cut(s)	18
MboI	GATC	1 cut(s)	16
MboII	GAAGA	1 cut(s)	349
MluCI	AATT	4 cut(s)	36, 189, 195, 358
MlyI	GAGTC	2 cut(s)	153, 276
MnlI	CCTC	1 cut(s)	303
MroI	TCCGGA	1 cut(s)	19
MseI	TTAA	1 cut(s)	39
MspI	CCGG	2 cut(s)	20, 62
MspR9I	CCNGG	1 cut(s)	235
MvaI	CCWGG	1 cut(s)	235
NdeII	GATC	1 cut(s)	16
NlaIII	CATG	4 cut(s)	95, 319, 332, 378
NspI	RCATGY	1 cut(s)	319
PaeI	GCATGC	1 cut(s)	319
PagI	TCATGA	1 cut(s)	374
PfeI	GAWTC	1 cut(s)	346
PinAI	ACCGGT	1 cut(s)	61
PkrI	GCNGC	1 cut(s)	178
PleI	GAGTC	2 cut(s)	152, 275
PpsI	GAGTC	2 cut(s)	152, 275
PshBI	ATTAAT	1 cut(s)	39
Psp6I	CCWGG	1 cut(s)	233
PspFI	CCCAGC	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	233
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	1 cut(s)	177
Sau3AI	GATC	1 cut(s)	16
SchI	GAGTC	2 cut(s)	153, 276
ScrFI	CCNGG	1 cut(s)	235
SetI	ASST	4 cut(s)	12, 30, 158, 265
SfaNI	GCATC	1 cut(s)	174
SpeI	ACTAGT	1 cut(s)	163
SphI	GCATGC	1 cut(s)	319
Sse9I	AATT	4 cut(s)	36, 189, 195, 358
SspI	AATATT	1 cut(s)	208
SspMI	CTAG	1 cut(s)	164
StyD4I	CCNGG	1 cut(s)	233
TaaI	ACNGT	1 cut(s)	49
TasI	AATT	4 cut(s)	36, 189, 195, 358
TfiI	GAWTC	1 cut(s)	346
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TscAI	CASTG	2 cut(s)	85, 178
TseI	GCWGC	1 cut(s)	176
TspDTI	ATGAA	1 cut(s)	117
TspRI	CASTG	2 cut(s)	85, 178
VspI	ATTAAT	1 cut(s)	39
XceI	RCATGY	1 cut(s)	319
XcmI	CCANNNNNNNNNTGG	1 cut(s)	176
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.