Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0024008

Physical Location & Seq

Genomic Coordinates Forward (+)

47778953 .. 47779237

Gene Structure 285 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1363100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGGCTACAAGGCTGAGACTGAACACGACCTTCATTGCGTGGGTGAGAGCAGAAAGCATGAACTTTTGAGGCACCACTGTGAGAAAGTTGCTCTTACTTTTGGGTTGATGTGCTTACCTTCCAATGCTCCTATCAGGATCATGAAGAATCTTAGGATTTGTGGTGATTGCCATGCTTTTATGAAGGTCAGTTCAAGTTGTAGGGGAAGGGAAATCATCGTTAGGGATACAAACAGGTTTCACCATTTCAAGAATGGTTATTGTTCTTGTGGGGAATTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

95

Amino Acids

10.9

Weight (kDa)

8.7

Isoelectric Point (pI)

31.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DYW_deaminase	PF14432	2 - 94	9.5e-38	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0024008)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28611
malus_domestica	MD05G1363100.v1.1
rosa_chinensis	RchiOBHm_Chr3g0492561

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	72
AclWI	GGATC	1 cut(s)	146
AcsI	RAATTY	1 cut(s)	275
AgsI	TTSAA	2 cut(s)	195, 250
AleI	CACNNNNGTG	1 cut(s)	78
Alw26I	GTCTC	1 cut(s)	11
AlwI	GGATC	1 cut(s)	146
ApoI	RAATTY	1 cut(s)	275
AsuHPI	GGTGA	3 cut(s)	56, 176, 233
BanI	GGYRCC	1 cut(s)	72
BciVI	GTATCC	1 cut(s)	220
BcoDI	GTCTC	1 cut(s)	11
BfuI	GTATCC	1 cut(s)	220
BmiI	GGNNCC	1 cut(s)	74
Bse3DI	GCAATG	1 cut(s)	34
BseMI	GCAATG	1 cut(s)	34
BseMII	CTCAG	1 cut(s)	6
BshNI	GGYRCC	1 cut(s)	72
BsmAI	GTCTC	1 cut(s)	11
Bsp143I	GATC	1 cut(s)	138
BspCNI	CTCAG	1 cut(s)	7
BspHI	TCATGA	1 cut(s)	141
BspLI	GGNNCC	1 cut(s)	74
BspPI	GGATC	1 cut(s)	146
BspT107I	GGYRCC	1 cut(s)	72
BsrDI	GCAATG	1 cut(s)	34
BssMI	GATC	1 cut(s)	138
Bst4CI	ACNGT	1 cut(s)	80
BstDEI	CTNAG	2 cut(s)	15, 152
BstKTI	GATC	1 cut(s)	141
BstMAI	GTCTC	1 cut(s)	11
BstMBI	GATC	1 cut(s)	138
BsuI	GTATCC	1 cut(s)	220
BtsIMutI	CAGTG	1 cut(s)	76
CciI	TCATGA	1 cut(s)	141
CviAII	CATG	3 cut(s)	59, 142, 173
CviJI	RGCY	2 cut(s)	6, 14
CviKI_1	RGCY	2 cut(s)	6, 14
DdeI	CTNAG	2 cut(s)	15, 152
DpnI	GATC	1 cut(s)	140
DpnII	GATC	1 cut(s)	138
FaeI	CATG	3 cut(s)	62, 145, 176
FaiI	YATR	4 cut(s)	60, 143, 174, 182
FalI	AAGNNNNNCTT	2 cut(s)	78, 110
FatI	CATG	3 cut(s)	58, 141, 172
Hin1II	CATG	3 cut(s)	62, 145, 176
HinfI	GANTC	1 cut(s)	148
HphI	GGTGA	3 cut(s)	56, 176, 233
Hpy188III	TCNNGA	3 cut(s)	136, 142, 250
HpyAV	CCTTC	4 cut(s)	41, 129, 178, 201
HpyCH4III	ACNGT	1 cut(s)	80
HpyF3I	CTNAG	2 cut(s)	15, 152
Hsp92II	CATG	3 cut(s)	62, 145, 176
Kzo9I	GATC	1 cut(s)	138
LmnI	GCTCC	1 cut(s)	133
LpnPI	CCDG	2 cut(s)	121, 220
MalI	GATC	1 cut(s)	140
MboI	GATC	1 cut(s)	138
MboII	GAAGA	1 cut(s)	157
MluCI	AATT	1 cut(s)	275
MnlI	CCTC	1 cut(s)	63
MslI	CAYNNNNRTG	1 cut(s)	78
NdeII	GATC	1 cut(s)	138
NlaIII	CATG	3 cut(s)	62, 145, 176
NlaIV	GGNNCC	1 cut(s)	74
OliI	CACNNNNGTG	1 cut(s)	78
PagI	TCATGA	1 cut(s)	141
PfeI	GAWTC	1 cut(s)	148
PspN4I	GGNNCC	1 cut(s)	74
RseI	CAYNNNNRTG	1 cut(s)	78
Sau3AI	GATC	1 cut(s)	138
SetI	ASST	4 cut(s)	33, 121, 189, 239
SmiMI	CAYNNNNRTG	1 cut(s)	78
Sse9I	AATT	1 cut(s)	275
TaaI	ACNGT	1 cut(s)	80
TasI	AATT	1 cut(s)	275
TfiI	GAWTC	1 cut(s)	148
TscAI	CASTG	1 cut(s)	83
TspDTI	ATGAA	4 cut(s)	23, 75, 158, 197
TspRI	CASTG	1 cut(s)	83
XapI	RAATTY	1 cut(s)	275
XcmI	CCANNNNNNNNNTGG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.