FvH4_2g00351

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
476802 .. 477146
345 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g00351.t1

Sequence Viewer

Length: 267 bp
ATGGAATCTTGGTACTTACCAGAATCAGGCAAATCTGCCATCAATCTTGCCGAGGCCTCGTACTCAGAAGGATCTCTTACCATTTCGTCAATGGATGATAAGCAGCTTTCTGATTTCTTCAATGCAACGGAGGCTGTTTTTACAATAAAACAATGGGTTTCTGATGCCGATCTAAATCCTTTGCCGCCGCTCAGCCCGGTTTTAGCGAAAGTCAAAGGGAATTGGATGCGAGAGCAAAACCTGAGAAATCAGCCCTTTGTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.9

Weight (kDa)

4.54

Isoelectric Point (pI)

42.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0024015)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00351 FvH4_4g10132
pyrus_communis pycom07g26270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 190
AciI CCGC 2 cut(s) 185, 188
AclWI GGATC 1 cut(s) 79
AfaI GTAC 2 cut(s) 14, 62
AfiI CCNNNNNNNGG 1 cut(s) 26
AgsI TTSAA 1 cut(s) 121
AluBI AGCT 1 cut(s) 106
AluI AGCT 1 cut(s) 106
AlwI GGATC 1 cut(s) 79
AoxI GGCC 1 cut(s) 54
ApeKI GCWGC 1 cut(s) 103
AsuC2I CCSGG 1 cut(s) 197
BbvI GCAGC 1 cut(s) 115
BccI CCATC 1 cut(s) 47
BcnI CCSGG 1 cut(s) 197
BisI GCNGC 3 cut(s) 104, 185, 188
BlpI GCTNAGC 1 cut(s) 191
BlsI GCNGC 3 cut(s) 105, 186, 189
Bme1390I CCNGG 1 cut(s) 197
BmrFI CCNGG 1 cut(s) 197
BmsI GCATC 2 cut(s) 154, 216
Bpu1102I GCTNAGC 1 cut(s) 191
BpuMI CCSGG 1 cut(s) 197
BsaBI GATNNNNATC 2 cut(s) 168, 174
BsaJI CCNNGG 1 cut(s) 51
Bsc4I CCNNNNNNNGG 1 cut(s) 26
Bse8I GATNNNNATC 2 cut(s) 168, 174
BseDI CCNNGG 1 cut(s) 51
BseGI GGATG 2 cut(s) 100, 231
BseJI GATNNNNATC 2 cut(s) 168, 174
BseLI CCNNNNNNNGG 1 cut(s) 26
BseMII CTCAG 3 cut(s) 78, 205, 233
BseXI GCAGC 1 cut(s) 115
BshFI GGCC 1 cut(s) 56
BsiSI CCGG 1 cut(s) 197
BslI CCNNNNNNNGG 1 cut(s) 26
BsnI GGCC 1 cut(s) 56
Bsp143I GATC 2 cut(s) 71, 169
Bsp1720I GCTNAGC 1 cut(s) 191
BspACI CCGC 2 cut(s) 185, 188
BspANI GGCC 1 cut(s) 56
BspCNI CTCAG 3 cut(s) 77, 204, 234
BspPI GGATC 1 cut(s) 79
BsrBI CCGCTC 1 cut(s) 190
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 2 cut(s) 71, 169
BstDEI CTNAG 3 cut(s) 64, 191, 242
BstF5I GGATG 2 cut(s) 100, 231
BstKTI GATC 2 cut(s) 74, 172
BstMBI GATC 2 cut(s) 71, 169
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstSCI CCNGG 1 cut(s) 195
BstV1I GCAGC 1 cut(s) 115
BstX2I RGATCY 1 cut(s) 71
BstYI RGATCY 1 cut(s) 71
BsuRI GGCC 1 cut(s) 56
BtsCI GGATG 2 cut(s) 100, 231
Csp6I GTAC 2 cut(s) 13, 61
CviJI RGCY 5 cut(s) 56, 106, 134, 195, 253
CviKI_1 RGCY 5 cut(s) 56, 106, 134, 195, 253
CviQI GTAC 2 cut(s) 13, 61
DdeI CTNAG 3 cut(s) 64, 191, 242
DpnI GATC 2 cut(s) 73, 171
DpnII GATC 2 cut(s) 71, 169
Eco147I AGGCCT 1 cut(s) 56
FalI AAGNNNNNCTT 2 cut(s) 60, 92
Fnu4HI GCNGC 3 cut(s) 104, 185, 188
FokI GGATG 2 cut(s) 107, 238
Fsp4HI GCNGC 3 cut(s) 104, 185, 188
GluI GCNGC 3 cut(s) 104, 185, 188
HaeIII GGCC 1 cut(s) 56
HapII CCGG 1 cut(s) 197
HinfI GANTC 2 cut(s) 5, 23
HpaII CCGG 1 cut(s) 197
Hpy188I TCNGA 3 cut(s) 67, 112, 163
HpyAV CCTTC 1 cut(s) 62
HpyCH4V TGCA 1 cut(s) 125
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 3 cut(s) 64, 191, 242
Kzo9I GATC 2 cut(s) 71, 169
LpnPI CCDG 4 cut(s) 12, 33, 210, 254
Lsp1109I GCAGC 1 cut(s) 115
LweI GCATC 2 cut(s) 154, 216
MalI GATC 2 cut(s) 73, 171
MbiI CCGCTC 1 cut(s) 190
MboI GATC 2 cut(s) 71, 169
MboII GAAGA 1 cut(s) 109
MflI RGATCY 1 cut(s) 71
MluCI AATT 1 cut(s) 220
MnlI CCTC 3 cut(s) 46, 67, 124
MspI CCGG 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 197
MwoI GCNNNNNNNGC 1 cut(s) 131
NciI CCSGG 1 cut(s) 197
NdeII GATC 2 cut(s) 71, 169
NmeAIII GCCGAG 1 cut(s) 76
PceI AGGCCT 1 cut(s) 56
PfeI GAWTC 2 cut(s) 5, 23
PkrI GCNGC 3 cut(s) 105, 186, 189
PsuI RGATCY 1 cut(s) 71
RsaI GTAC 2 cut(s) 14, 62
RsaNI GTAC 2 cut(s) 13, 61
SatI GCNGC 3 cut(s) 104, 185, 188
Sau3AI GATC 2 cut(s) 71, 169
ScrFI CCNGG 1 cut(s) 197
SetI ASST 2 cut(s) 108, 243
SfaNI GCATC 2 cut(s) 154, 216
Sse9I AATT 1 cut(s) 220
SseBI AGGCCT 1 cut(s) 56
SsiI CCGC 2 cut(s) 185, 188
StuI AGGCCT 1 cut(s) 56
StyD4I CCNGG 1 cut(s) 195
TasI AATT 1 cut(s) 220
TauI GCSGC 2 cut(s) 187, 190
TfiI GAWTC 2 cut(s) 5, 23
TseI GCWGC 1 cut(s) 103
TspGWI ACGGA 1 cut(s) 143
XcmI CCANNNNNNNNNTGG 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.