FvH4_2g02353
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0027687
Physical Location & Seq
Forward (+)
1930838 .. 1932263
1426 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g02353.t1

Sequence Viewer

Length: 345 bp
ATGAGGATTTTATATCAACTCCAAGGCCAGGCAATCCTCGACGTTGACGATATCTCCACTCGCCGCTCCTCTACTTTCCTCAACGTCGTCGCTCTCGGCAATGTTGTAAGTGCTTTAAGGCATTCTCTGCAAGATAGACTGAGTAAGAGTTCCTCAGGCAGAAGCCGAGATGAAACAAGCACAGGTGAATATGCGGAGCACAATGATGCAATTTTCCTGATTATAATACCTGCATCACAAGCACCTGAAGTTGCTTACTCTAAATCCCTTAGAGCTGTCGAGGAATATGATGGAGATGGTACAAGAACCGTTGGAGTTATTAGTAAGATAGACCAAGCCGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000266 GO:0000902 GO:0000904 GO:0001101 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006892 GO:0006896 GO:0006897 GO:0006898 GO:0006996 GO:0007005 GO:0007034 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009888 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0012505 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0021700 GO:0022622 GO:0030054 GO:0030135 GO:0030136 GO:0030139 GO:0030154 GO:0030276 GO:0031090 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032878 GO:0032989 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045334 GO:0046907 GO:0048193 GO:0048285 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0065007 GO:0071695 GO:0071840 GO:0071944 GO:0072583 GO:0090558 GO:0090627 GO:0097305 GO:0097708 GO:0098588 GO:0098657 GO:0098805 GO:0099402 GO:1901700 GO:1905392 GO:2000114
KEGG Pathways
Metabolic & Signaling
ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED PH

Protein Analysis

115

Amino Acids

12.44

Weight (kDa)

5.26

Isoelectric Point (pI)

54.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0027687)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02353 FvH4_2g02431

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 224
Acc36I ACCTGC 1 cut(s) 238
AccBSI CCGCTC 1 cut(s) 66
AciI CCGC 2 cut(s) 64, 194
AcuI CTGAAG 1 cut(s) 267
AfaI GTAC 1 cut(s) 301
AfiI CCNNNNNNNGG 1 cut(s) 28
AjnI CCWGG 1 cut(s) 27
AluBI AGCT 1 cut(s) 275
AluI AGCT 1 cut(s) 275
Alw21I GWGCWC 1 cut(s) 201
AoxI GGCC 1 cut(s) 25
AsuHPI GGTGA 1 cut(s) 197
AxyI CCTNAGG 1 cut(s) 154
Bbv12I GWGCWC 1 cut(s) 201
BccI CCATC 2 cut(s) 284, 290
BceAI ACGGC 1 cut(s) 323
BciT130I CCWGG 1 cut(s) 29
BfuAI ACCTGC 1 cut(s) 238
BisI GCNGC 1 cut(s) 64
BlsI GCNGC 1 cut(s) 65
Bme1390I CCNGG 1 cut(s) 29
BmrFI CCNGG 1 cut(s) 29
BmsI GCATC 2 cut(s) 196, 242
BsaJI CCNNGG 1 cut(s) 22
BsaXI ACNNNNNCTCC 2 cut(s) 38, 68
Bsc4I CCNNNNNNNGG 1 cut(s) 28
Bse21I CCTNAGG 1 cut(s) 154
Bse3DI GCAATG 1 cut(s) 106
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 1 cut(s) 22
BseLI CCNNNNNNNGG 1 cut(s) 28
BseMI GCAATG 1 cut(s) 106
BseMII CTCAG 2 cut(s) 131, 168
BseRI GAGGAG 1 cut(s) 58
BshFI GGCC 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 201
BslI CCNNNNNNNGG 1 cut(s) 28
BsmI GAATGC 1 cut(s) 121
BsnI GGCC 1 cut(s) 27
Bsp1286I GDGCHC 1 cut(s) 201
BspACI CCGC 2 cut(s) 64, 194
BspANI GGCC 1 cut(s) 27
BspCNI CTCAG 2 cut(s) 132, 167
BspMI ACCTGC 1 cut(s) 238
BsrBI CCGCTC 1 cut(s) 66
BsrDI GCAATG 1 cut(s) 106
BssECI CCNNGG 1 cut(s) 22
BssT1I CCWWGG 1 cut(s) 22
Bst2UI CCWGG 1 cut(s) 29
Bst4CI ACNGT 1 cut(s) 310
BstAPI GCANNNNNTGC 1 cut(s) 127
BstDEI CTNAG 3 cut(s) 140, 154, 269
BstMWI GCNNNNNNNGC 2 cut(s) 127, 239
BstNI CCWGG 1 cut(s) 29
BstSCI CCNGG 1 cut(s) 27
Bsu36I CCTNAGG 1 cut(s) 154
BsuRI GGCC 1 cut(s) 27
BveI ACCTGC 1 cut(s) 238
Csp6I GTAC 1 cut(s) 300
CviJI RGCY 4 cut(s) 27, 165, 275, 338
CviKI_1 RGCY 4 cut(s) 27, 165, 275, 338
CviQI GTAC 1 cut(s) 300
DdeI CTNAG 3 cut(s) 140, 154, 269
Eco130I CCWWGG 1 cut(s) 22
Eco32I GATATC 1 cut(s) 52
Eco57I CTGAAG 1 cut(s) 267
Eco81I CCTNAGG 1 cut(s) 154
EcoRII CCWGG 1 cut(s) 27
EcoRV GATATC 1 cut(s) 52
EcoT14I CCWWGG 1 cut(s) 22
ErhI CCWWGG 1 cut(s) 22
FaiI YATR 4 cut(s) 13, 192, 224, 288
Fnu4HI GCNGC 1 cut(s) 64
Fsp4HI GCNGC 1 cut(s) 64
GluI GCNGC 1 cut(s) 64
HaeIII GGCC 1 cut(s) 27
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HphI GGTGA 1 cut(s) 197
Hpy166II GTNNAC 1 cut(s) 46
Hpy188III TCNNGA 1 cut(s) 217
Hpy8I GTNNAC 1 cut(s) 46
Hpy99I CGWCG 3 cut(s) 44, 89, 92
HpyCH4III ACNGT 1 cut(s) 310
HpyCH4IV ACGT 2 cut(s) 42, 84
HpyCH4V TGCA 3 cut(s) 130, 209, 233
HpyF10VI GCNNNNNNNGC 2 cut(s) 127, 239
HpyF3I CTNAG 3 cut(s) 140, 154, 269
HpySE526I ACGT 2 cut(s) 42, 84
LmnI GCTCC 2 cut(s) 71, 196
LpnPI CCDG 7 cut(s) 14, 41, 141, 168, 230, 243, 258
LweI GCATC 2 cut(s) 196, 242
MaeII ACGT 2 cut(s) 42, 84
MbiI CCGCTC 1 cut(s) 66
MhlI GDGCHC 1 cut(s) 201
MluCI AATT 1 cut(s) 210
MmeI TCCRAC 1 cut(s) 292
MnlI CCTC 5 cut(s) 47, 79, 89, 163, 274
MseI TTAA 1 cut(s) 116
MslI CAYNNNNRTG 1 cut(s) 204
MspR9I CCNGG 1 cut(s) 29
Mva1269I GAATGC 1 cut(s) 121
MvaI CCWGG 1 cut(s) 29
MwoI GCNNNNNNNGC 2 cut(s) 127, 239
NmeAIII GCCGAG 2 cut(s) 75, 191
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PctI GAATGC 1 cut(s) 121
PkrI GCNGC 1 cut(s) 65
PsiI TTATAA 1 cut(s) 224
Psp6I CCWGG 1 cut(s) 27
PspGI CCWGG 1 cut(s) 27
RsaI GTAC 1 cut(s) 301
RsaNI GTAC 1 cut(s) 300
RseI CAYNNNNRTG 1 cut(s) 204
SaqAI TTAA 1 cut(s) 116
SatI GCNGC 1 cut(s) 64
ScrFI CCNGG 1 cut(s) 29
SduI GDGCHC 1 cut(s) 201
SetI ASST 6 cut(s) 45, 87, 187, 232, 247, 277
SfaNI GCATC 2 cut(s) 196, 242
SmiMI CAYNNNNRTG 1 cut(s) 204
Sse9I AATT 1 cut(s) 210
SsiI CCGC 2 cut(s) 64, 194
StyD4I CCNGG 1 cut(s) 27
StyI CCWWGG 1 cut(s) 22
TaaI ACNGT 1 cut(s) 310
TaiI ACGT 2 cut(s) 45, 87
TaqI TCGA 2 cut(s) 39, 279
TasI AATT 1 cut(s) 210
TauI GCSGC 1 cut(s) 66
Tru1I TTAA 1 cut(s) 116
Tru9I TTAA 1 cut(s) 116
TspDTI ATGAA 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.