FvH4_2g02431
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0027687
Physical Location & Seq
Forward (+)
1962126 .. 1965252
3127 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g02431.t1

Sequence Viewer

Length: 783 bp
ATGAGGATTTTATATCAACTCCAAGGCCAGGCAATCCTCGACGTTGACGATATCTCCACTCGCCGCTCCTCTACTTTCCTCAACGTCGTCGCTCTCGGCAATGTTGCAGAAGCCGAGATGAAACAAGCACAGCTAGGTGAATATGCGGAGCACAATGATGCAATTTTCCTGATTATAATACCTGCATCACAAGCACCTGAAGTTGCTTACTCTAAATCCCTTAGAGCTGTCGAGGAATATGATGGAGATGGTCAATCAGTTTTGATAGCTTCAGCACAGTCTGGTTCTGAGAATTCTTGGGAAAATCCGCGGAGGGCTGAAAGTGAAAGTCTTAAATCCTTTCTGACTGGTGCTCCTCAAACCAATGCTGCTATTTTCTTTGGAAAGTTTGATAGTTTAGTACAGTTGTTACAAGGGAAGTCTCAAATAGTTAAGGATGAGTTGGTAAAGCTTGGTGCCTCCATGGTACAGAGTGCTGAAGGTACTAGATCTCTTGCTTTGGAGCTTTGTCGTGAATTTGAGGGTAAGTTTCTCCTACACATTACATCTGGTGAGGGTTCTGGTTGGAAAATGGTTTCAAGTTTTGAAGGAAATTTTCCCAATAGAATAAAGCAACTACCATTAGGTCGACATTGTGATATCAACAACGTCAAAAGGATCGTGTTGGAACCAGATGGTTATCAGCCTTATCTCATATCTCCTGAAAAAGGTTTGAGGTCATTAATAAAAGGTGTCTTAGAGCTTGCAAAGGAACCGTCACGTCTTTGTGTGGATGAGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000266 GO:0000902 GO:0000904 GO:0001101 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006892 GO:0006896 GO:0006897 GO:0006898 GO:0006996 GO:0007005 GO:0007034 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009888 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0012505 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0021700 GO:0022622 GO:0030054 GO:0030135 GO:0030136 GO:0030139 GO:0030154 GO:0030276 GO:0031090 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032878 GO:0032989 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045334 GO:0046907 GO:0048193 GO:0048285 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0065007 GO:0071695 GO:0071840 GO:0071944 GO:0072583 GO:0090558 GO:0090627 GO:0097305 GO:0097708 GO:0098588 GO:0098657 GO:0098805 GO:0099402 GO:1901700 GO:1905392 GO:2000114
KEGG Pathways
Metabolic & Signaling
ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED PH

Protein Analysis

261

Amino Acids

28.59

Weight (kDa)

5.18

Isoelectric Point (pI)

50.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0027687)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g02353 FvH4_2g02431

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 176
Acc36I ACCTGC 1 cut(s) 190
AccB1I GGYRCC 1 cut(s) 455
AccBSI CCGCTC 1 cut(s) 66
AccI GTMKAC 1 cut(s) 628
AccII CGCG 1 cut(s) 310
AciI CCGC 4 cut(s) 64, 146, 308, 310
AclWI GGATC 1 cut(s) 665
AcsI RAATTY 3 cut(s) 292, 515, 592
AcuI CTGAAG 3 cut(s) 219, 255, 498
AfaI GTAC 3 cut(s) 402, 468, 484
AfiI CCNNNNNNNGG 2 cut(s) 28, 707
AgsI TTSAA 2 cut(s) 579, 587
AjiI CACGTC 1 cut(s) 761
AjnI CCWGG 1 cut(s) 27
AluBI AGCT 6 cut(s) 133, 227, 269, 451, 505, 742
AluI AGCT 6 cut(s) 133, 227, 269, 451, 505, 742
Alw21I GWGCWC 2 cut(s) 153, 355
Alw26I GTCTC 1 cut(s) 426
AlwI GGATC 1 cut(s) 665
AoxI GGCC 1 cut(s) 25
ApeKI GCWGC 1 cut(s) 368
ApoI RAATTY 3 cut(s) 292, 515, 592
ArsI GACNNNNNNTTYG 2 cut(s) 740, 772
AseI ATTAAT 1 cut(s) 722
AsuHPI GGTGA 2 cut(s) 149, 563
BanI GGYRCC 1 cut(s) 455
Bbv12I GWGCWC 2 cut(s) 153, 355
BbvI GCAGC 1 cut(s) 355
BccI CCATC 3 cut(s) 236, 242, 668
BciT130I CCWGG 1 cut(s) 29
BcoDI GTCTC 1 cut(s) 426
BfaI CTAG 2 cut(s) 134, 486
BfuAI ACCTGC 1 cut(s) 190
BglII AGATCT 1 cut(s) 488
BisI GCNGC 2 cut(s) 64, 369
BlsI GCNGC 2 cut(s) 65, 370
Bme1390I CCNGG 1 cut(s) 29
BmgBI CACGTC 1 cut(s) 761
BmiI GGNNCC 3 cut(s) 457, 669, 753
BmrFI CCNGG 1 cut(s) 29
BmsI GCATC 2 cut(s) 148, 194
BsaBI GATNNNNATC 1 cut(s) 678
BsaJI CCNNGG 3 cut(s) 22, 308, 462
BsaXI ACNNNNNCTCC 4 cut(s) 38, 68, 337, 367
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 707
Bse1I ACTGG 1 cut(s) 352
Bse3DI GCAATG 1 cut(s) 106
Bse8I GATNNNNATC 1 cut(s) 678
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 3 cut(s) 22, 308, 462
BseGI GGATG 2 cut(s) 442, 778
BseJI GATNNNNATC 1 cut(s) 678
BseLI CCNNNNNNNGG 2 cut(s) 28, 707
BseMI GCAATG 1 cut(s) 106
BseMII CTCAG 1 cut(s) 279
BseNI ACTGG 1 cut(s) 352
BseRI GAGGAG 2 cut(s) 58, 345
BseXI GCAGC 1 cut(s) 355
Bsh1236I CGCG 1 cut(s) 310
BshFI GGCC 1 cut(s) 27
BshNI GGYRCC 1 cut(s) 455
BsiHKAI GWGCWC 2 cut(s) 153, 355
BslI CCNNNNNNNGG 2 cut(s) 28, 707
BsmAI GTCTC 1 cut(s) 426
BsnI GGCC 1 cut(s) 27
Bsp1286I GDGCHC 2 cut(s) 153, 355
Bsp143I GATC 2 cut(s) 488, 657
Bsp19I CCATGG 1 cut(s) 462
BspACI CCGC 4 cut(s) 64, 146, 308, 310
BspANI GGCC 1 cut(s) 27
BspCNI CTCAG 1 cut(s) 280
BspFNI CGCG 1 cut(s) 310
BspLI GGNNCC 3 cut(s) 457, 669, 753
BspMI ACCTGC 1 cut(s) 190
BspPI GGATC 1 cut(s) 665
BspT107I GGYRCC 1 cut(s) 455
BsrBI CCGCTC 1 cut(s) 66
BsrDI GCAATG 1 cut(s) 106
BsrI ACTGG 1 cut(s) 352
BssECI CCNNGG 3 cut(s) 22, 308, 462
BssMI GATC 2 cut(s) 488, 657
BssT1I CCWWGG 2 cut(s) 22, 462
Bst2UI CCWGG 1 cut(s) 29
Bst4CI ACNGT 3 cut(s) 279, 405, 756
BstC8I GCNNGC 1 cut(s) 744
BstDEI CTNAG 3 cut(s) 221, 288, 736
BstDSI CCRYGG 2 cut(s) 308, 462
BstENI CCTNNNNNAGG 1 cut(s) 705
BstF5I GGATG 2 cut(s) 442, 778
BstFNI CGCG 1 cut(s) 310
BstKTI GATC 2 cut(s) 491, 660
BstMAI GTCTC 1 cut(s) 426
BstMBI GATC 2 cut(s) 488, 657
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstNI CCWGG 1 cut(s) 29
BstSCI CCNGG 1 cut(s) 27
BstUI CGCG 1 cut(s) 310
BstV1I GCAGC 1 cut(s) 355
BstX2I RGATCY 1 cut(s) 488
BstYI RGATCY 1 cut(s) 488
BsuRI GGCC 1 cut(s) 27
BtgI CCRYGG 2 cut(s) 308, 462
BtrI CACGTC 1 cut(s) 761
BtsCI GGATG 2 cut(s) 442, 778
BveI ACCTGC 1 cut(s) 190
Cac8I GCNNGC 1 cut(s) 744
Cfr42I CCGCGG 1 cut(s) 311
Csp6I GTAC 3 cut(s) 401, 467, 483
CviAII CATG 1 cut(s) 463
CviQI GTAC 3 cut(s) 401, 467, 483
DdeI CTNAG 3 cut(s) 221, 288, 736
DpnI GATC 2 cut(s) 490, 659
DpnII GATC 2 cut(s) 488, 657
Eco130I CCWWGG 2 cut(s) 22, 462
Eco32I GATATC 2 cut(s) 52, 640
Eco57I CTGAAG 3 cut(s) 219, 255, 498
EcoNI CCTNNNNNAGG 1 cut(s) 705
EcoRI GAATTC 1 cut(s) 292
EcoRII CCWGG 1 cut(s) 27
EcoRV GATATC 2 cut(s) 52, 640
EcoT14I CCWWGG 2 cut(s) 22, 462
ErhI CCWWGG 2 cut(s) 22, 462
FaeI CATG 1 cut(s) 466
FaiI YATR 7 cut(s) 13, 144, 176, 240, 464, 695, 781
FatI CATG 1 cut(s) 462
FblI GTMKAC 1 cut(s) 628
Fnu4HI GCNGC 2 cut(s) 64, 369
FokI GGATG 1 cut(s) 449
Fsp4HI GCNGC 2 cut(s) 64, 369
FspBI CTAG 2 cut(s) 134, 486
GluI GCNGC 2 cut(s) 64, 369
HaeIII GGCC 1 cut(s) 27
Hin1II CATG 1 cut(s) 466
HincII GTYRAC 2 cut(s) 46, 629
HindII GTYRAC 2 cut(s) 46, 629
HindIII AAGCTT 1 cut(s) 449
HphI GGTGA 2 cut(s) 149, 563
Hpy166II GTNNAC 2 cut(s) 46, 629
Hpy188I TCNGA 2 cut(s) 289, 345
Hpy188III TCNNGA 3 cut(s) 169, 512, 701
Hpy8I GTNNAC 2 cut(s) 46, 629
Hpy99I CGWCG 3 cut(s) 44, 89, 92
HpyAV CCTTC 2 cut(s) 473, 581
HpyCH4III ACNGT 3 cut(s) 279, 405, 756
HpyCH4IV ACGT 4 cut(s) 42, 84, 648, 760
HpyCH4V TGCA 4 cut(s) 107, 161, 185, 746
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 3 cut(s) 221, 288, 736
HpySE526I ACGT 4 cut(s) 42, 84, 648, 760
Hsp92II CATG 1 cut(s) 466
KspI CCGCGG 1 cut(s) 311
Kzo9I GATC 2 cut(s) 488, 657
LmnI GCTCC 4 cut(s) 71, 148, 358, 502
Lsp1109I GCAGC 1 cut(s) 355
LweI GCATC 2 cut(s) 148, 194
MaeI CTAG 2 cut(s) 134, 486
MaeII ACGT 4 cut(s) 42, 84, 648, 760
MaeIII GTNAC 2 cut(s) 408, 756
MalI GATC 2 cut(s) 490, 659
MbiI CCGCTC 1 cut(s) 66
MboI GATC 2 cut(s) 488, 657
MflI RGATCY 1 cut(s) 488
MhlI GDGCHC 2 cut(s) 153, 355
MluCI AATT 4 cut(s) 162, 292, 515, 592
MmeI TCCRAC 2 cut(s) 545, 645
MseI TTAA 3 cut(s) 333, 432, 722
MslI CAYNNNNRTG 1 cut(s) 156
MspA1I CMGCKG 1 cut(s) 310
MspR9I CCNGG 1 cut(s) 29
MvaI CCWGG 1 cut(s) 29
MvnI CGCG 1 cut(s) 310
MwoI GCNNNNNNNGC 1 cut(s) 191
NcoI CCATGG 1 cut(s) 462
NdeII GATC 2 cut(s) 488, 657
NlaIII CATG 1 cut(s) 466
NlaIV GGNNCC 3 cut(s) 457, 669, 753
NmeAIII GCCGAG 2 cut(s) 75, 139
NmuCI GTSAC 1 cut(s) 756
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PkrI GCNGC 2 cut(s) 65, 370
PshBI ATTAAT 1 cut(s) 722
PsiI TTATAA 1 cut(s) 176
Psp6I CCWGG 1 cut(s) 27
PspGI CCWGG 1 cut(s) 27
PspN4I GGNNCC 3 cut(s) 457, 669, 753
PsuI RGATCY 1 cut(s) 488
RsaI GTAC 3 cut(s) 402, 468, 484
RsaNI GTAC 3 cut(s) 401, 467, 483
RseI CAYNNNNRTG 1 cut(s) 156
SacII CCGCGG 1 cut(s) 311
SalI GTCGAC 1 cut(s) 627
SaqAI TTAA 3 cut(s) 333, 432, 722
SatI GCNGC 2 cut(s) 64, 369
Sau3AI GATC 2 cut(s) 488, 657
ScrFI CCNGG 1 cut(s) 29
SduI GDGCHC 2 cut(s) 153, 355
SfaNI GCATC 2 cut(s) 148, 194
Sfr303I CCGCGG 1 cut(s) 311
SgrBI CCGCGG 1 cut(s) 311
SmiMI CAYNNNNRTG 1 cut(s) 156
Sse9I AATT 4 cut(s) 162, 292, 515, 592
SsiI CCGC 4 cut(s) 64, 146, 308, 310
SspMI CTAG 2 cut(s) 134, 486
StyD4I CCNGG 1 cut(s) 27
StyI CCWWGG 2 cut(s) 22, 462
TaaI ACNGT 3 cut(s) 279, 405, 756
TaiI ACGT 4 cut(s) 45, 87, 651, 763
TaqI TCGA 3 cut(s) 39, 231, 628
TasI AATT 4 cut(s) 162, 292, 515, 592
TatI WGTACW 1 cut(s) 400
TauI GCSGC 1 cut(s) 66
Tru1I TTAA 3 cut(s) 333, 432, 722
Tru9I TTAA 3 cut(s) 333, 432, 722
TseFI GTSAC 1 cut(s) 756
TseI GCWGC 1 cut(s) 368
Tsp45I GTSAC 1 cut(s) 756
TspDTI ATGAA 1 cut(s) 134
VspI ATTAAT 1 cut(s) 722
XagI CCTNNNNNAGG 1 cut(s) 705
XapI RAATTY 3 cut(s) 292, 515, 592
XmiI GTMKAC 1 cut(s) 628
XspI CTAG 2 cut(s) 134, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.