Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0027698

Physical Location & Seq

Genomic Coordinates Reverse (-)

5162810 .. 5165698

Gene Structure 2889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g06211.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGTATAACTGTTTTAAAAGTTCATATTTCCCTCTGCAGAAGTTCGATATATGGCCTATCCTTGTTAGGGTGGACTACAGTCCTAGCCGTGTTGATCTGGCAGCATTAAGAGGCGGGAAGTACGTAGAACTTGTAAATCTTGTCCCATGGAAGGGGGTAGAGCTGCAACTTAAACATGTTCATGCTGTTGGCATTTATGGCTGGGGCAGTGTATGTGAAACAATTATAGGGGAGTGGTTAGAAGACATCTCTCAAAATCAGATTCATAAAATATTGCGAGGTCTTCCTACCATTCGGTCATTGGTTGCTGTTGGTTCGGGTGCAGCGAAGCTGGTTTCTTTGCCAGTTGAGCACTATAGGAAGGACAAGAGGGTACTGAAGGGAATGCAAAGAGGTACAATTGCATTTCTTAGAAGTATTTCTCTTGAAGCTGTTGGTCTTGGAGTACATTTAGCAGCTGGGGCTCATGATATTTTGCTCCAAGCTGAATGTTTGCTAACAAGCGTTCCTCCTTCTGTACCTTGGTCCGGACCACATAAAGTAAAATCCAGTGCTAGATCCAATCAACCTAAAGATGCCCAACAAGGAATTCATCAGGCATATGAAAGTCTCAGTGATGGTTTGGGGAAATCTGCTTCTGCCTTGGTTCGGATGCCCCTGAAGAAATACCAACGTGGAGCTGGTGCTGGATCAGCTCTGGCATCTGCTGTTCGGGCAGTCCCTGCAGCTGCTATAGCTCCAGCTTCTGCTTGTGCAAGTGCTGTACATTGTGCTCTTCTTGGCTTCAGAAATAGCCTTGATCTGGAGCGTAAGAAAGAGTCCATGGAGAAATATCTAGGTCCCCCTCAGCCATGGGAACAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0002376 GO:0006914 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007033 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009814 GO:0009816 GO:0009987 GO:0010150 GO:0016043 GO:0016236 GO:0022607 GO:0032501 GO:0032502 GO:0042742 GO:0043207 GO:0044085 GO:0044237 GO:0044248 GO:0045087 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0061919 GO:0070925 GO:0071840 GO:0090693 GO:0098542 GO:0099402 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 map04136 map04138 map04140

Pfam Domains

Protein Families

ATG2_CAD ATG_C Chorein_N

Protein Analysis

289

Amino Acids

31.2

Weight (kDa)

9.53

Isoelectric Point (pI)

41.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATG2_CAD	PF13329	12 - 278	5.3e-94	Autophagy-related protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0027698)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06211
pyrus_communis	pycom05g07270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	527
AciI	CCGC	1 cut(s)	114
AclWI	GGATC	2 cut(s)	552, 697
AcsI	RAATTY	1 cut(s)	588
AcuI	CTGAAG	3 cut(s)	398, 680, 769
AfaI	GTAC	6 cut(s)	122, 375, 397, 447, 519, 765
AfiI	CCNNNNNNNGG	6 cut(s)	67, 151, 152, 527, 648, 802
AflIII	ACRYGT	1 cut(s)	175
AgsI	TTSAA	1 cut(s)	428
AjuI	GAANNNNNNNTTGG	2 cut(s)	573, 605
Alw21I	GWGCWC	2 cut(s)	354, 775
Alw26I	GTCTC	1 cut(s)	614
AlwI	GGATC	2 cut(s)	552, 697
AlwNI	CAGNNNCTG	2 cut(s)	722, 746
Aor13HI	TCCGGA	1 cut(s)	527
AoxI	GGCC	1 cut(s)	53
ApeKI	GCWGC	6 cut(s)	101, 163, 323, 455, 725, 728
ApoI	RAATTY	1 cut(s)	588
Asp700I	GAANNNNTTC	1 cut(s)	418
AspS9I	GGNCC	3 cut(s)	525, 530, 839
AvaII	GGWCC	3 cut(s)	525, 530, 839
BanII	GRGCYC	1 cut(s)	466
BbsI	GAAGAC	2 cut(s)	249, 275
Bbv12I	GWGCWC	2 cut(s)	354, 775
BbvCI	CCTCAGC	1 cut(s)	846
BbvI	GCAGC	6 cut(s)	113, 150, 335, 467, 715, 737
BccI	CCATC	1 cut(s)	611
BceAI	ACGGC	1 cut(s)	72
BcoDI	GTCTC	1 cut(s)	614
BfaI	CTAG	3 cut(s)	84, 555, 836
BfmI	CTRYAG	5 cut(s)	35, 76, 355, 723, 732
BisI	GCNGC	6 cut(s)	102, 164, 324, 456, 726, 729
BlsI	GCNGC	6 cut(s)	103, 165, 325, 457, 727, 730
Bme18I	GGWCC	3 cut(s)	525, 530, 839
BmgT120I	GGNCC	3 cut(s)	525, 530, 839
BmiI	GGNNCC	1 cut(s)	841
BmsI	GCATC	3 cut(s)	565, 642, 710
BoxI	GACNNNNGTC	1 cut(s)	78
BpiI	GAAGAC	2 cut(s)	249, 275
BpmI	CTGGAG	2 cut(s)	723, 824
Bpu10I	CCTNAGC	1 cut(s)	846
BsaAI	YACGTR	1 cut(s)	124
BsaJI	CCNNGG	5 cut(s)	146, 521, 642, 822, 851
BsaWI	WCCGGW	1 cut(s)	527
Bsc4I	CCNNNNNNNGG	6 cut(s)	67, 151, 152, 527, 648, 802
Bse1I	ACTGG	2 cut(s)	344, 549
BseAI	TCCGGA	1 cut(s)	527
BseDI	CCNNGG	5 cut(s)	146, 521, 642, 822, 851
BseGI	GGATG	1 cut(s)	657
BseLI	CCNNNNNNNGG	6 cut(s)	67, 151, 152, 527, 648, 802
BseMII	CTCAG	2 cut(s)	625, 860
BseNI	ACTGG	2 cut(s)	344, 549
BseXI	GCAGC	6 cut(s)	113, 150, 335, 467, 715, 737
BseYI	CCCAGC	2 cut(s)	201, 458
BsgI	GTGCAG	1 cut(s)	342
BshFI	GGCC	1 cut(s)	55
BsiHKAI	GWGCWC	2 cut(s)	354, 775
BsiSI	CCGG	1 cut(s)	528
BslFI	GGGAC	3 cut(s)	128, 704, 825
BslI	CCNNNNNNNGG	6 cut(s)	67, 151, 152, 527, 648, 802
BsmAI	GTCTC	1 cut(s)	614
BsmFI	GGGAC	3 cut(s)	128, 704, 825
BsmI	GAATGC	1 cut(s)	390
BsnI	GGCC	1 cut(s)	55
Bsp1286I	GDGCHC	3 cut(s)	354, 466, 775
Bsp13I	TCCGGA	1 cut(s)	527
Bsp1407I	TGTACA	1 cut(s)	763
Bsp143I	GATC	4 cut(s)	94, 557, 689, 799
Bsp19I	CCATGG	3 cut(s)	146, 822, 851
BspACI	CCGC	1 cut(s)	114
BspANI	GGCC	1 cut(s)	55
BspCNI	CTCAG	2 cut(s)	624, 859
BspEI	TCCGGA	1 cut(s)	527
BspHI	TCATGA	1 cut(s)	466
BspLI	GGNNCC	1 cut(s)	841
BspMAI	CTGCAG	2 cut(s)	39, 727
BspPI	GGATC	2 cut(s)	552, 697
BspQI	GCTCTTC	1 cut(s)	780
BsrGI	TGTACA	1 cut(s)	763
BsrI	ACTGG	2 cut(s)	344, 549
BssECI	CCNNGG	5 cut(s)	146, 521, 642, 822, 851
BssMI	GATC	4 cut(s)	94, 557, 689, 799
BssT1I	CCWWGG	5 cut(s)	146, 521, 642, 822, 851
Bst4CI	ACNGT	2 cut(s)	11, 80
Bst6I	CTCTTC	1 cut(s)	780
BstAPI	GCANNNNNTGC	1 cut(s)	722
BstAUI	TGTACA	1 cut(s)	763
BstBAI	YACGTR	1 cut(s)	124
BstDEI	CTNAG	3 cut(s)	410, 611, 846
BstDSI	CCRYGG	3 cut(s)	146, 822, 851
BstF5I	GGATG	1 cut(s)	657
BstKTI	GATC	4 cut(s)	97, 560, 692, 802
BstMAI	GTCTC	1 cut(s)	614
BstMBI	GATC	4 cut(s)	94, 557, 689, 799
BstMWI	GCNNNNNNNGC	7 cut(s)	198, 349, 461, 692, 713, 722, 734
BstNSI	RCATGY	1 cut(s)	179
BstPAI	GACNNNNGTC	1 cut(s)	78
BstSFI	CTRYAG	5 cut(s)	35, 76, 355, 723, 732
BstSNI	TACGTA	1 cut(s)	124
BstV1I	GCAGC	6 cut(s)	113, 150, 335, 467, 715, 737
BstV2I	GAAGAC	2 cut(s)	249, 275
BstX2I	RGATCY	1 cut(s)	557
BstYI	RGATCY	1 cut(s)	557
BsuRI	GGCC	1 cut(s)	55
BtgI	CCRYGG	3 cut(s)	146, 822, 851
BtsCI	GGATG	1 cut(s)	657
BtsI	GCAGTG	1 cut(s)	214
BtsIMutI	CAGTG	3 cut(s)	214, 556, 619
CaiI	CAGNNNCTG	2 cut(s)	722, 746
CciI	TCATGA	1 cut(s)	466
Cfr13I	GGNCC	3 cut(s)	525, 530, 839
Csp6I	GTAC	6 cut(s)	121, 374, 396, 446, 518, 764
CviAII	CATG	6 cut(s)	147, 176, 182, 467, 823, 852
CviQI	GTAC	6 cut(s)	121, 374, 396, 446, 518, 764
DdeI	CTNAG	3 cut(s)	410, 611, 846
DpnI	GATC	4 cut(s)	96, 559, 691, 801
DpnII	GATC	4 cut(s)	94, 557, 689, 799
DraI	TTTAAA	1 cut(s)	16
Eam1104I	CTCTTC	1 cut(s)	780
EarI	CTCTTC	1 cut(s)	780
Eco105I	TACGTA	1 cut(s)	124
Eco130I	CCWWGG	5 cut(s)	146, 521, 642, 822, 851
Eco24I	GRGCYC	1 cut(s)	466
Eco47I	GGWCC	3 cut(s)	525, 530, 839
Eco57I	CTGAAG	3 cut(s)	398, 680, 769
EcoO109I	RGGNCCY	1 cut(s)	839
EcoRI	GAATTC	1 cut(s)	588
EcoT14I	CCWWGG	5 cut(s)	146, 521, 642, 822, 851
EcoT38I	GRGCYC	1 cut(s)	466
ErhI	CCWWGG	5 cut(s)	146, 521, 642, 822, 851
FaeI	CATG	6 cut(s)	150, 179, 185, 470, 826, 855
FaqI	GGGAC	3 cut(s)	128, 704, 825
FatI	CATG	6 cut(s)	146, 175, 181, 466, 822, 851
FauI	CCCGC	1 cut(s)	107
FauNDI	CATATG	1 cut(s)	601
Fnu4HI	GCNGC	6 cut(s)	102, 164, 324, 456, 726, 729
FokI	GGATG	1 cut(s)	664
FriOI	GRGCYC	1 cut(s)	466
Fsp4HI	GCNGC	6 cut(s)	102, 164, 324, 456, 726, 729
FspBI	CTAG	3 cut(s)	84, 555, 836
GluI	GCNGC	6 cut(s)	102, 164, 324, 456, 726, 729
GsaI	CCCAGC	2 cut(s)	205, 462
GsuI	CTGGAG	2 cut(s)	723, 824
HaeIII	GGCC	1 cut(s)	55
HapII	CCGG	1 cut(s)	528
Hin1II	CATG	6 cut(s)	150, 179, 185, 470, 826, 855
HinfI	GANTC	2 cut(s)	262, 818
HpaII	CCGG	1 cut(s)	528
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	3 cut(s)	261, 651, 788
Hpy188III	TCNNGA	4 cut(s)	425, 467, 528, 803
Hpy8I	GTNNAC	1 cut(s)	73
HpyAV	CCTTC	4 cut(s)	145, 355, 373, 522
HpyCH4III	ACNGT	2 cut(s)	11, 80
HpyCH4IV	ACGT	2 cut(s)	123, 673
HpyCH4V	TGCA	7 cut(s)	37, 166, 323, 388, 404, 725, 755
HpyF10VI	GCNNNNNNNGC	7 cut(s)	198, 349, 461, 692, 713, 722, 734
HpyF3I	CTNAG	3 cut(s)	410, 611, 846
HpySE526I	ACGT	2 cut(s)	123, 673
Hsp92II	CATG	6 cut(s)	150, 179, 185, 470, 826, 855
Kpn2I	TCCGGA	1 cut(s)	527
Kzo9I	GATC	4 cut(s)	94, 557, 689, 799
LguI	GCTCTTC	1 cut(s)	780
LmnI	GCTCC	4 cut(s)	483, 677, 742, 805
Lsp1109I	GCAGC	6 cut(s)	113, 150, 335, 467, 715, 737
LweI	GCATC	3 cut(s)	565, 642, 710
MaeI	CTAG	3 cut(s)	84, 555, 836
MaeII	ACGT	2 cut(s)	123, 673
MalI	GATC	4 cut(s)	96, 559, 691, 801
MboI	GATC	4 cut(s)	94, 557, 689, 799
MboII	GAAGA	4 cut(s)	254, 275, 673, 767
MfeI	CAATTG	1 cut(s)	399
MflI	RGATCY	1 cut(s)	557
MhlI	GDGCHC	3 cut(s)	354, 466, 775
MluCI	AATT	3 cut(s)	222, 399, 588
MlyI	GAGTC	1 cut(s)	827
MnlI	CCTC	7 cut(s)	42, 104, 272, 363, 386, 519, 855
MroI	TCCGGA	1 cut(s)	527
MroXI	GAANNNNTTC	1 cut(s)	418
MseI	TTAA	3 cut(s)	15, 107, 171
MslI	CAYNNNNRTG	1 cut(s)	180
MspA1I	CMGCKG	2 cut(s)	458, 728
MspI	CCGG	1 cut(s)	528
MunI	CAATTG	1 cut(s)	399
Mva1269I	GAATGC	1 cut(s)	390
MwoI	GCNNNNNNNGC	7 cut(s)	198, 349, 461, 692, 713, 722, 734
NcoI	CCATGG	3 cut(s)	146, 822, 851
NdeI	CATATG	1 cut(s)	601
NdeII	GATC	4 cut(s)	94, 557, 689, 799
NlaIII	CATG	6 cut(s)	150, 179, 185, 470, 826, 855
NlaIV	GGNNCC	1 cut(s)	841
NspI	RCATGY	1 cut(s)	179
PagI	TCATGA	1 cut(s)	466
PciI	ACATGT	1 cut(s)	175
PciSI	GCTCTTC	1 cut(s)	780
PcsI	WCGNNNNNNNCGW	1 cut(s)	323
PctI	GAATGC	1 cut(s)	390
PdmI	GAANNNNTTC	1 cut(s)	418
PfeI	GAWTC	1 cut(s)	262
PkrI	GCNGC	6 cut(s)	103, 165, 325, 457, 727, 730
PleI	GAGTC	1 cut(s)	826
PpsI	GAGTC	1 cut(s)	826
Ppu21I	YACGTR	1 cut(s)	124
PpuMI	RGGWCCY	1 cut(s)	839
PscI	ACATGT	1 cut(s)	175
PshAI	GACNNNNGTC	1 cut(s)	78
Psp5II	RGGWCCY	1 cut(s)	839
PspFI	CCCAGC	2 cut(s)	201, 458
PspN4I	GGNNCC	1 cut(s)	841
PspPI	GGNCC	3 cut(s)	525, 530, 839
PspPPI	RGGWCCY	1 cut(s)	839
PstI	CTGCAG	2 cut(s)	39, 727
PstNI	CAGNNNCTG	2 cut(s)	722, 746
PsuI	RGATCY	1 cut(s)	557
PvuII	CAGCTG	2 cut(s)	458, 728
RsaI	GTAC	6 cut(s)	122, 375, 397, 447, 519, 765
RsaNI	GTAC	6 cut(s)	121, 374, 396, 446, 518, 764
RseI	CAYNNNNRTG	1 cut(s)	180
SapI	GCTCTTC	1 cut(s)	780
SaqAI	TTAA	3 cut(s)	15, 107, 171
SatI	GCNGC	6 cut(s)	102, 164, 324, 456, 726, 729
Sau3AI	GATC	4 cut(s)	94, 557, 689, 799
Sau96I	GGNCC	3 cut(s)	525, 530, 839
SchI	GAGTC	1 cut(s)	827
SduI	GDGCHC	3 cut(s)	354, 466, 775
SfaNI	GCATC	3 cut(s)	565, 642, 710
SfcI	CTRYAG	5 cut(s)	35, 76, 355, 723, 732
SinI	GGWCC	3 cut(s)	525, 530, 839
SmiMI	CAYNNNNRTG	1 cut(s)	180
SnaBI	TACGTA	1 cut(s)	124
Sse9I	AATT	3 cut(s)	222, 399, 588
SsiI	CCGC	1 cut(s)	114
SspI	AATATT	1 cut(s)	273
SspMI	CTAG	3 cut(s)	84, 555, 836
StyI	CCWWGG	5 cut(s)	146, 521, 642, 822, 851
TaaI	ACNGT	2 cut(s)	11, 80
TaiI	ACGT	2 cut(s)	126, 676
TaqI	TCGA	1 cut(s)	45
TaqII	GACCGA	1 cut(s)	285
TasI	AATT	3 cut(s)	222, 399, 588
TatI	WGTACW	2 cut(s)	445, 763
TfiI	GAWTC	1 cut(s)	262
Tru1I	TTAA	3 cut(s)	15, 107, 171
Tru9I	TTAA	3 cut(s)	15, 107, 171
TscAI	CASTG	3 cut(s)	214, 556, 619
TseI	GCWGC	6 cut(s)	101, 163, 323, 455, 725, 728
TspDTI	ATGAA	5 cut(s)	12, 170, 254, 581, 618
TspRI	CASTG	3 cut(s)	214, 556, 619
VpaK11BI	GGWCC	3 cut(s)	525, 530, 839
XapI	RAATTY	1 cut(s)	588
XceI	RCATGY	1 cut(s)	179
XcmI	CCANNNNNNNNNTGG	2 cut(s)	298, 677
XmnI	GAANNNNTTC	1 cut(s)	418
XspI	CTAG	3 cut(s)	84, 555, 836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.