Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0027698

Physical Location & Seq

Genomic Coordinates Forward (+)

10234786 .. 10235848

Gene Structure 1063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g07270.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGCAAAGAGGTACAATTGCATTTCTTAGAAGTATTTCTCTTGAAGCTGTTGGACTTGGAGTACATTTGGCCGCCGGGGCATATGATATTTTGCTCCAAGCGGAATATTTACTTACAGGCATTCCTTCTGCGCCACGGTCTGTACCACATAAAATGAAAACCAACGTTCGATCTAATCAACCTATAGATGCTCAACAAGGAATTCATCAGGCTTATGAAAGCCTTAGTGATGGCCTGGGGAAATCTGCTTCTGCCTTGATACGGACTCCTTTGAAAAAATACCAGCGTGGAGCTGGTGCAGGACCAGCTTTGGCCACTGCTGCTCGGGCAGTTCCTGCAGCTGCTATAACTCCTGCTTCTGCTTGTGCTAGTGCTATGCACTGTGCTCTTCTTGGCTTCAGAAATAGCCTTGATCCTGAGCGTAAGAAAGAGTCCATTGAGAAATATCTGGGTCCCCCTCAACCATGGGAACAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0002376 GO:0006914 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007033 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009814 GO:0009816 GO:0009987 GO:0010150 GO:0016043 GO:0016236 GO:0022607 GO:0032501 GO:0032502 GO:0042742 GO:0043207 GO:0044085 GO:0044237 GO:0044248 GO:0045087 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0061919 GO:0070925 GO:0071840 GO:0090693 GO:0098542 GO:0099402 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 map04136 map04138 map04140

Pfam Domains

Protein Families

ATG2_CAD ATG_C Chorein_N

Protein Analysis

160

Amino Acids

16.8

Weight (kDa)

9.55

Isoelectric Point (pI)

48.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0027698)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06211
pyrus_communis	pycom05g07270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	72, 101
AclI	AACGTT	1 cut(s)	165
AclWI	GGATC	1 cut(s)	407
AcoI	YGGCCR	2 cut(s)	69, 312
AcsI	RAATTY	1 cut(s)	201
AcuI	CTGAAG	1 cut(s)	382
AfaI	GTAC	3 cut(s)	13, 63, 144
AfiI	CCNNNNNNNGG	1 cut(s)	261
AgsI	TTSAA	2 cut(s)	44, 274
AjnI	CCWGG	1 cut(s)	234
AluBI	AGCT	4 cut(s)	47, 293, 308, 341
AluI	AGCT	4 cut(s)	47, 293, 308, 341
Alw21I	GWGCWC	1 cut(s)	388
AlwI	GGATC	1 cut(s)	407
AlwNI	CAGNNNCTG	1 cut(s)	335
Ama87I	CYCGRG	1 cut(s)	324
AoxI	GGCC	3 cut(s)	69, 232, 312
ApeKI	GCWGC	3 cut(s)	320, 338, 341
ApoI	RAATTY	1 cut(s)	201
Asp700I	GAANNNNTTC	1 cut(s)	34
AspLEI	GCGC	1 cut(s)	133
AspS9I	GGNCC	2 cut(s)	302, 452
AsuC2I	CCSGG	1 cut(s)	76
AvaI	CYCGRG	1 cut(s)	324
AvaII	GGWCC	2 cut(s)	302, 452
BalI	TGGCCA	1 cut(s)	314
Bbv12I	GWGCWC	1 cut(s)	388
BbvI	GCAGC	3 cut(s)	307, 328, 350
BccI	CCATC	1 cut(s)	224
BciT130I	CCWGG	1 cut(s)	236
BcnI	CCSGG	1 cut(s)	76
BfaI	CTAG	1 cut(s)	369
BfmI	CTRYAG	2 cut(s)	183, 336
BglI	GCCNNNNNGGC	1 cut(s)	77
BisI	GCNGC	4 cut(s)	72, 321, 339, 342
BlsI	GCNGC	4 cut(s)	73, 322, 340, 343
Bme1390I	CCNGG	2 cut(s)	76, 236
Bme18I	GGWCC	2 cut(s)	302, 452
BmeT110I	CYCGRG	1 cut(s)	324
BmgT120I	GGNCC	2 cut(s)	302, 452
BmiI	GGNNCC	2 cut(s)	453, 454
BmrFI	CCNGG	2 cut(s)	76, 236
BmsI	GCATC	1 cut(s)	178
Bpu10I	CCTNAGC	1 cut(s)	417
BpuMI	CCSGG	1 cut(s)	76
BsaJI	CCNNGG	4 cut(s)	75, 134, 235, 464
Bsc4I	CCNNNNNNNGG	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	236
BseDI	CCNNGG	4 cut(s)	75, 134, 235, 464
BseLI	CCNNNNNNNGG	1 cut(s)	261
BseMII	CTCAG	1 cut(s)	408
BseXI	GCAGC	3 cut(s)	307, 328, 350
BsgI	GTGCAG	1 cut(s)	318
BshFI	GGCC	3 cut(s)	71, 234, 314
BsiHKAI	GWGCWC	1 cut(s)	388
BsiHKCI	CYCGRG	1 cut(s)	324
BsiSI	CCGG	1 cut(s)	75
BslFI	GGGAC	1 cut(s)	438
BslI	CCNNNNNNNGG	1 cut(s)	261
BsmFI	GGGAC	1 cut(s)	438
BsmI	GAATGC	1 cut(s)	120
BsnI	GGCC	3 cut(s)	71, 234, 314
BsoBI	CYCGRG	1 cut(s)	324
Bsp1286I	GDGCHC	1 cut(s)	388
Bsp143I	GATC	2 cut(s)	170, 412
Bsp19I	CCATGG	1 cut(s)	464
BspACI	CCGC	2 cut(s)	72, 101
BspANI	GGCC	3 cut(s)	71, 234, 314
BspCNI	CTCAG	1 cut(s)	409
BspLI	GGNNCC	2 cut(s)	453, 454
BspMAI	CTGCAG	1 cut(s)	340
BspPI	GGATC	1 cut(s)	407
BspQI	GCTCTTC	1 cut(s)	393
BssECI	CCNNGG	4 cut(s)	75, 134, 235, 464
BssMI	GATC	2 cut(s)	170, 412
BssT1I	CCWWGG	1 cut(s)	464
Bst2UI	CCWGG	1 cut(s)	236
Bst4CI	ACNGT	2 cut(s)	138, 383
Bst6I	CTCTTC	1 cut(s)	393
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstDEI	CTNAG	3 cut(s)	26, 224, 417
BstDSI	CCRYGG	2 cut(s)	134, 464
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	2 cut(s)	173, 415
BstMBI	GATC	2 cut(s)	170, 412
BstMWI	GCNNNNNNNGC	5 cut(s)	77, 305, 320, 326, 335
BstNI	CCWGG	1 cut(s)	236
BstSCI	CCNGG	2 cut(s)	74, 234
BstSFI	CTRYAG	2 cut(s)	183, 336
BstV1I	GCAGC	3 cut(s)	307, 328, 350
BsuRI	GGCC	3 cut(s)	71, 234, 314
BtgI	CCRYGG	2 cut(s)	134, 464
BtsI	GCAGTG	1 cut(s)	315
BtsIMutI	CAGTG	2 cut(s)	315, 379
CaiI	CAGNNNCTG	1 cut(s)	335
CfoI	GCGC	1 cut(s)	133
Cfr13I	GGNCC	2 cut(s)	302, 452
Csp6I	GTAC	3 cut(s)	12, 62, 143
CviAII	CATG	1 cut(s)	465
CviQI	GTAC	3 cut(s)	12, 62, 143
DdeI	CTNAG	3 cut(s)	26, 224, 417
DpnI	GATC	2 cut(s)	172, 414
DpnII	GATC	2 cut(s)	170, 412
EaeI	YGGCCR	2 cut(s)	69, 312
Eam1104I	CTCTTC	1 cut(s)	393
EarI	CTCTTC	1 cut(s)	393
Eco130I	CCWWGG	1 cut(s)	464
Eco47I	GGWCC	2 cut(s)	302, 452
Eco57I	CTGAAG	1 cut(s)	382
Eco88I	CYCGRG	1 cut(s)	324
EcoO109I	RGGNCCY	1 cut(s)	452
EcoRI	GAATTC	1 cut(s)	201
EcoRII	CCWGG	1 cut(s)	234
EcoT14I	CCWWGG	1 cut(s)	464
ErhI	CCWWGG	1 cut(s)	464
FaeI	CATG	1 cut(s)	468
FaiI	YATR	8 cut(s)	82, 84, 150, 185, 216, 347, 377, 466
FaqI	GGGAC	1 cut(s)	438
FatI	CATG	1 cut(s)	464
FauNDI	CATATG	1 cut(s)	82
Fnu4HI	GCNGC	4 cut(s)	72, 321, 339, 342
Fsp4HI	GCNGC	4 cut(s)	72, 321, 339, 342
FspBI	CTAG	1 cut(s)	369
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	4 cut(s)	72, 321, 339, 342
HaeIII	GGCC	3 cut(s)	71, 234, 314
HapII	CCGG	1 cut(s)	75
HhaI	GCGC	1 cut(s)	133
Hin1II	CATG	1 cut(s)	468
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HinfI	GANTC	2 cut(s)	265, 431
HpaII	CCGG	1 cut(s)	75
Hpy188I	TCNGA	1 cut(s)	401
Hpy188III	TCNNGA	2 cut(s)	41, 416
HpyAV	CCTTC	1 cut(s)	135
HpyCH4III	ACNGT	2 cut(s)	138, 383
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	5 cut(s)	4, 20, 299, 338, 379
HpyF10VI	GCNNNNNNNGC	5 cut(s)	77, 305, 320, 326, 335
HpyF3I	CTNAG	3 cut(s)	26, 224, 417
HpySE526I	ACGT	1 cut(s)	165
Hsp92II	CATG	1 cut(s)	468
HspAI	GCGC	1 cut(s)	131
KflI	GGGWCCC	1 cut(s)	452
Kzo9I	GATC	2 cut(s)	170, 412
LguI	GCTCTTC	1 cut(s)	393
LmnI	GCTCC	2 cut(s)	99, 290
Lsp1109I	GCAGC	3 cut(s)	307, 328, 350
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	1 cut(s)	369
MaeII	ACGT	1 cut(s)	165
MalI	GATC	2 cut(s)	172, 414
MboI	GATC	2 cut(s)	170, 412
MboII	GAAGA	1 cut(s)	380
MfeI	CAATTG	1 cut(s)	15
MhlI	GDGCHC	1 cut(s)	388
MlsI	TGGCCA	1 cut(s)	314
MluCI	AATT	2 cut(s)	15, 201
MluNI	TGGCCA	1 cut(s)	314
MlyI	GAGTC	2 cut(s)	259, 440
MmeI	TCCRAC	1 cut(s)	31
MnlI	CCTC	1 cut(s)	468
Mox20I	TGGCCA	1 cut(s)	314
MroXI	GAANNNNTTC	1 cut(s)	34
MscI	TGGCCA	1 cut(s)	314
Msp20I	TGGCCA	1 cut(s)	314
MspA1I	CMGCKG	1 cut(s)	341
MspI	CCGG	1 cut(s)	75
MspR9I	CCNGG	2 cut(s)	76, 236
MunI	CAATTG	1 cut(s)	15
Mva1269I	GAATGC	1 cut(s)	120
MvaI	CCWGG	1 cut(s)	236
MwoI	GCNNNNNNNGC	5 cut(s)	77, 305, 320, 326, 335
NciI	CCSGG	1 cut(s)	76
NcoI	CCATGG	1 cut(s)	464
NdeI	CATATG	1 cut(s)	82
NdeII	GATC	2 cut(s)	170, 412
NlaIII	CATG	1 cut(s)	468
NlaIV	GGNNCC	2 cut(s)	453, 454
PciSI	GCTCTTC	1 cut(s)	393
PctI	GAATGC	1 cut(s)	120
PdmI	GAANNNNTTC	1 cut(s)	34
PkrI	GCNGC	4 cut(s)	73, 322, 340, 343
PleI	GAGTC	2 cut(s)	259, 439
PpsI	GAGTC	2 cut(s)	259, 439
PpuMI	RGGWCCY	1 cut(s)	452
Psp1406I	AACGTT	1 cut(s)	165
Psp5II	RGGWCCY	1 cut(s)	452
Psp6I	CCWGG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	2 cut(s)	453, 454
PspPI	GGNCC	2 cut(s)	302, 452
PspPPI	RGGWCCY	1 cut(s)	452
PstI	CTGCAG	1 cut(s)	340
PstNI	CAGNNNCTG	1 cut(s)	335
PvuII	CAGCTG	1 cut(s)	341
RsaI	GTAC	3 cut(s)	13, 63, 144
RsaNI	GTAC	3 cut(s)	12, 62, 143
SapI	GCTCTTC	1 cut(s)	393
SatI	GCNGC	4 cut(s)	72, 321, 339, 342
Sau3AI	GATC	2 cut(s)	170, 412
Sau96I	GGNCC	2 cut(s)	302, 452
SchI	GAGTC	2 cut(s)	259, 440
ScrFI	CCNGG	2 cut(s)	76, 236
SduI	GDGCHC	1 cut(s)	388
SetI	ASST	7 cut(s)	13, 49, 168, 184, 295, 310, 343
SfaNI	GCATC	1 cut(s)	178
SfcI	CTRYAG	2 cut(s)	183, 336
SinI	GGWCC	2 cut(s)	302, 452
Sse9I	AATT	2 cut(s)	15, 201
SsiI	CCGC	2 cut(s)	72, 101
SspI	AATATT	1 cut(s)	107
SspMI	CTAG	1 cut(s)	369
StyD4I	CCNGG	2 cut(s)	74, 234
StyI	CCWWGG	1 cut(s)	464
TaaI	ACNGT	2 cut(s)	138, 383
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	1 cut(s)	169
TasI	AATT	2 cut(s)	15, 201
TatI	WGTACW	1 cut(s)	61
TauI	GCSGC	1 cut(s)	74
TscAI	CASTG	2 cut(s)	322, 386
TseI	GCWGC	3 cut(s)	320, 338, 341
TspDTI	ATGAA	3 cut(s)	170, 194, 231
TspGWI	ACGGA	1 cut(s)	277
TspRI	CASTG	2 cut(s)	322, 386
VpaK11BI	GGWCC	2 cut(s)	302, 452
XapI	RAATTY	1 cut(s)	201
XcmI	CCANNNNNNNNNTGG	1 cut(s)	290
XmnI	GAANNNNTTC	1 cut(s)	34
XspI	CTAG	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.