Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0021021

Physical Location & Seq

Genomic Coordinates Reverse (-)

7500648 .. 7501307

Gene Structure 660 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g08580.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCCACAATGGCTGCTATAACCAACTTCCCAACCATCGCCAAATGCGTATCGAACGGCCGAGAAAACCACACGGTGGTTGCGGACATGGACGGGACCTTGCTAAGAGGTAGAAGCTCTTTTCCCTACTTTGCTCTCATTGCATTTGAGGTCGGTGGGATTTTAAGGCTCCTATTCTTGCTCTTGGTCACCCCATTAGCTGGCCTCCTCTATTACTTCGTATCTGAATCGGCCGGAATCCAAGTTTTGATCTTTGCTACATTTGCGGGTGTGAGAGTGTCTGAGATTGAGTCGGTGGCGCGTGCCGTGCTGCCTAAGTTTTACTCAAGTGACATTCACCCGGAGTCGTGGCGTGTACTCTCAGCCTGCGAGAAGCGGTGTATTCTTACTGCTAACCCTAGGATTATGGTGGAGGCGTTTTGTAAGGATTTCCTCGGACTTGATATGGTTTTGGGAACTGAAATTGCAACCTACAAGGGTAAAGCCACAGGCTTTGTTTCTCCACCGGGTGTGCTTGTAGCAGAGAAGAAGGCTGAAGCTCTTAAGAAGGCTTTTGGAGATGTACAGCCAGAGATTGGGCTTGGAGATAGGCACACTGATTTTCCTTTCATGGCCCTTTGCAAGGTTTGTCCTGTGAATCTTGCGGCTAACTTAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009791 GO:0009908 GO:0009987 GO:0010143 GO:0016020 GO:0016311 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016791 GO:0022414 GO:0032501 GO:0032502 GO:0042578 GO:0043170 GO:0044237 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090447 GO:0090567 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

Acyltransferase HAD

Protein Analysis

220

Amino Acids

23.67

Weight (kDa)

7.59

Isoelectric Point (pI)

38.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAD_RAM2_N	PF23270	25 - 209	1.9e-60	Glycerol-3-phosphate acyltransferase RAM2-like, HAD-like domain
HAD	PF12710	26 - 204	2.1e-24	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021021)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08580
rosa_multiflora	Rmu_sc0000050.1_g000040
rosa_samantha	Rh4BG432200 Rh4CG446800 Rh4DG428300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	76, 200, 575
AccII	CGCG	1 cut(s)	301
AciI	CCGC	4 cut(s)	83, 266, 376, 644
AcoI	YGGCCR	3 cut(s)	3, 58, 231
AcuI	CTGAAG	1 cut(s)	555
AdeI	CACNNNGTG	2 cut(s)	76, 509
AfaI	GTAC	2 cut(s)	357, 564
AfiI	CCNNNNNNNGG	4 cut(s)	76, 200, 575, 622
AflII	CTTAAG	1 cut(s)	542
AluBI	AGCT	3 cut(s)	117, 200, 539
AluI	AGCT	3 cut(s)	117, 200, 539
AoxI	GGCC	5 cut(s)	3, 58, 202, 231, 612
ApeKI	GCWGC	2 cut(s)	14, 310
AspA2I	CCTAGG	1 cut(s)	398
AspLEI	GCGC	1 cut(s)	301
AspS9I	GGNCC	2 cut(s)	96, 613
AsuC2I	CCSGG	2 cut(s)	341, 507
AsuHPI	GGTGA	2 cut(s)	181, 329
AvaII	GGWCC	1 cut(s)	96
AvrII	CCTAGG	1 cut(s)	398
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	1 cut(s)	297
BccI	CCATC	1 cut(s)	44
BceAI	ACGGC	2 cut(s)	73, 290
BcnI	CCSGG	2 cut(s)	341, 507
BfaI	CTAG	1 cut(s)	399
BfrI	CTTAAG	1 cut(s)	542
BglI	GCCNNNNNGGC	1 cut(s)	11
BisI	GCNGC	3 cut(s)	15, 311, 645
BlnI	CCTAGG	1 cut(s)	398
BlsI	GCNGC	3 cut(s)	16, 312, 646
Bme1390I	CCNGG	2 cut(s)	341, 507
Bme18I	GGWCC	1 cut(s)	96
BmgT120I	GGNCC	2 cut(s)	96, 613
BmiI	GGNNCC	2 cut(s)	97, 170
BmrFI	CCNGG	2 cut(s)	341, 507
BpuEI	CTTGAG	1 cut(s)	310
BpuMI	CCSGG	2 cut(s)	341, 507
BsaJI	CCNNGG	2 cut(s)	398, 433
Bsc4I	CCNNNNNNNGG	4 cut(s)	76, 200, 575, 622
Bse3DI	GCAATG	1 cut(s)	138
BseDI	CCNNGG	2 cut(s)	398, 433
BseLI	CCNNNNNNNGG	4 cut(s)	76, 200, 575, 622
BseMI	GCAATG	1 cut(s)	138
BseMII	CTCAG	2 cut(s)	273, 375
BseRI	GAGGAG	1 cut(s)	197
BseX3I	CGGCCG	2 cut(s)	58, 231
BseXI	GCAGC	1 cut(s)	297
Bsh1236I	CGCG	1 cut(s)	301
Bsh1285I	CGRYCG	2 cut(s)	61, 234
BshFI	GGCC	5 cut(s)	5, 60, 204, 233, 614
BsiEI	CGRYCG	2 cut(s)	61, 234
BsiSI	CCGG	3 cut(s)	234, 341, 506
BslFI	GGGAC	1 cut(s)	109
BslI	CCNNNNNNNGG	4 cut(s)	76, 200, 575, 622
BsmFI	GGGAC	1 cut(s)	109
BsnI	GGCC	5 cut(s)	5, 60, 204, 233, 614
Bsp1407I	TGTACA	1 cut(s)	562
Bsp143I	GATC	1 cut(s)	249
BspACI	CCGC	4 cut(s)	83, 266, 376, 644
BspANI	GGCC	5 cut(s)	5, 60, 204, 233, 614
BspCNI	CTCAG	2 cut(s)	274, 374
BspFNI	CGCG	1 cut(s)	301
BspLI	GGNNCC	2 cut(s)	97, 170
BspTI	CTTAAG	1 cut(s)	542
BsrDI	GCAATG	1 cut(s)	138
BsrGI	TGTACA	1 cut(s)	562
BssECI	CCNNGG	2 cut(s)	398, 433
BssMI	GATC	1 cut(s)	249
BssT1I	CCWWGG	1 cut(s)	398
Bst4CI	ACNGT	1 cut(s)	76
BstAFI	CTTAAG	1 cut(s)	542
BstAUI	TGTACA	1 cut(s)	562
BstC8I	GCNNGC	3 cut(s)	202, 303, 367
BstDEI	CTNAG	5 cut(s)	104, 282, 315, 361, 652
BstEII	GGTNACC	1 cut(s)	187
BstENI	CCTNNNNNAGG	1 cut(s)	620
BstFNI	CGCG	1 cut(s)	301
BstHHI	GCGC	1 cut(s)	301
BstKTI	GATC	1 cut(s)	252
BstMBI	GATC	1 cut(s)	249
BstMCI	CGRYCG	2 cut(s)	61, 234
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 140, 263, 307
BstPI	GGTNACC	1 cut(s)	187
BstSCI	CCNGG	2 cut(s)	339, 505
BstUI	CGCG	1 cut(s)	301
BstV1I	GCAGC	1 cut(s)	297
BstZI	CGGCCG	2 cut(s)	58, 231
BsuRI	GGCC	5 cut(s)	5, 60, 204, 233, 614
BtgZI	GCGATG	1 cut(s)	22
BtsIMutI	CAGTG	1 cut(s)	594
Cac8I	GCNNGC	3 cut(s)	202, 303, 367
CfoI	GCGC	1 cut(s)	301
Cfr13I	GGNCC	2 cut(s)	96, 613
Csp6I	GTAC	2 cut(s)	356, 563
CspCI	CAANNNNNGTGG	2 cut(s)	475, 510
CviAII	CATG	2 cut(s)	88, 610
CviQI	GTAC	2 cut(s)	356, 563
DdeI	CTNAG	5 cut(s)	104, 282, 315, 361, 652
DpnI	GATC	1 cut(s)	251
DpnII	GATC	1 cut(s)	249
DraIII	CACNNNGTG	2 cut(s)	76, 509
EaeI	YGGCCR	3 cut(s)	3, 58, 231
EagI	CGGCCG	2 cut(s)	58, 231
EclXI	CGGCCG	2 cut(s)	58, 231
Eco130I	CCWWGG	1 cut(s)	398
Eco47I	GGWCC	1 cut(s)	96
Eco52I	CGGCCG	2 cut(s)	58, 231
Eco57I	CTGAAG	1 cut(s)	555
Eco91I	GGTNACC	1 cut(s)	187
EcoNI	CCTNNNNNAGG	1 cut(s)	620
EcoO109I	RGGNCCY	1 cut(s)	96
EcoO65I	GGTNACC	1 cut(s)	187
EcoT14I	CCWWGG	1 cut(s)	398
ErhI	CCWWGG	1 cut(s)	398
FaeI	CATG	2 cut(s)	91, 613
FaiI	YATR	5 cut(s)	20, 89, 407, 446, 611
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	2 cut(s)	87, 609
FauI	CCCGC	1 cut(s)	259
Fnu4HI	GCNGC	3 cut(s)	15, 311, 645
Fsp4HI	GCNGC	3 cut(s)	15, 311, 645
FspBI	CTAG	1 cut(s)	399
GlaI	GCGC	1 cut(s)	300
GluI	GCNGC	3 cut(s)	15, 311, 645
HaeIII	GGCC	5 cut(s)	5, 60, 204, 233, 614
HapII	CCGG	3 cut(s)	234, 341, 506
HhaI	GCGC	1 cut(s)	301
Hin1II	CATG	2 cut(s)	91, 613
Hin6I	GCGC	1 cut(s)	299
HinP1I	GCGC	1 cut(s)	299
HinfI	GANTC	5 cut(s)	227, 237, 290, 344, 637
HpaII	CCGG	3 cut(s)	234, 341, 506
HphI	GGTGA	2 cut(s)	181, 329
Hpy166II	GTNNAC	1 cut(s)	356
Hpy188I	TCNGA	3 cut(s)	226, 283, 437
Hpy8I	GTNNAC	1 cut(s)	356
HpyAV	CCTTC	2 cut(s)	523, 541
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4V	TGCA	3 cut(s)	143, 467, 621
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 140, 263, 307
HpyF3I	CTNAG	5 cut(s)	104, 282, 315, 361, 652
Hsp92II	CATG	2 cut(s)	91, 613
HspAI	GCGC	1 cut(s)	299
Kzo9I	GATC	1 cut(s)	249
LmnI	GCTCC	1 cut(s)	174
LpnPI	CCDG	8 cut(s)	186, 247, 354, 379, 474, 519, 582, 645
Lsp1109I	GCAGC	1 cut(s)	297
MaeI	CTAG	1 cut(s)	399
MaeIII	GTNAC	2 cut(s)	187, 329
MalI	GATC	1 cut(s)	251
MboI	GATC	1 cut(s)	249
MboII	GAAGA	1 cut(s)	538
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	462
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	299, 353
MnlI	CCTC	6 cut(s)	101, 142, 215, 218, 406, 443
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	164, 543, 658
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	542
MspI	CCGG	3 cut(s)	234, 341, 506
MspR9I	CCNGG	2 cut(s)	341, 507
MvnI	CGCG	1 cut(s)	301
MwoI	GCNNNNNNNGC	4 cut(s)	11, 140, 263, 307
NciI	CCSGG	2 cut(s)	341, 507
NdeII	GATC	1 cut(s)	249
NlaIII	CATG	2 cut(s)	91, 613
NlaIV	GGNNCC	2 cut(s)	97, 170
NmeAIII	GCCGAG	1 cut(s)	86
NmuCI	GTSAC	2 cut(s)	187, 329
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PfeI	GAWTC	3 cut(s)	227, 237, 637
PflMI	CCANNNNNTGG	3 cut(s)	76, 200, 575
PkrI	GCNGC	3 cut(s)	16, 312, 646
PleI	GAGTC	2 cut(s)	298, 352
PpsI	GAGTC	2 cut(s)	298, 352
PpuMI	RGGWCCY	1 cut(s)	96
Psp5II	RGGWCCY	1 cut(s)	96
PspEI	GGTNACC	1 cut(s)	187
PspN4I	GGNNCC	2 cut(s)	97, 170
PspPI	GGNCC	2 cut(s)	96, 613
PspPPI	RGGWCCY	1 cut(s)	96
RsaI	GTAC	2 cut(s)	357, 564
RsaNI	GTAC	2 cut(s)	356, 563
SaqAI	TTAA	3 cut(s)	164, 543, 658
SatI	GCNGC	3 cut(s)	15, 311, 645
Sau3AI	GATC	1 cut(s)	249
Sau96I	GGNCC	2 cut(s)	96, 613
SchI	GAGTC	2 cut(s)	299, 353
ScrFI	CCNGG	2 cut(s)	341, 507
SetI	ASST	9 cut(s)	101, 112, 119, 153, 202, 473, 541, 627, 658
SinI	GGWCC	1 cut(s)	96
SmlI	CTYRAG	2 cut(s)	325, 542
SmoI	CTYRAG	2 cut(s)	325, 542
Sse9I	AATT	1 cut(s)	462
SsiI	CCGC	4 cut(s)	83, 266, 376, 644
SspMI	CTAG	1 cut(s)	399
StyD4I	CCNGG	2 cut(s)	339, 505
StyI	CCWWGG	1 cut(s)	398
TaaI	ACNGT	1 cut(s)	76
TaqI	TCGA	1 cut(s)	53
TasI	AATT	1 cut(s)	462
TatI	WGTACW	2 cut(s)	355, 562
TauI	GCSGC	1 cut(s)	647
TfiI	GAWTC	3 cut(s)	227, 237, 637
Tru1I	TTAA	3 cut(s)	164, 543, 658
Tru9I	TTAA	3 cut(s)	164, 543, 658
TscAI	CASTG	1 cut(s)	601
TseFI	GTSAC	2 cut(s)	187, 329
TseI	GCWGC	2 cut(s)	14, 310
Tsp45I	GTSAC	2 cut(s)	187, 329
TspDTI	ATGAA	1 cut(s)	598
TspRI	CASTG	1 cut(s)	601
Van91I	CCANNNNNTGG	3 cut(s)	76, 200, 575
Vha464I	CTTAAG	1 cut(s)	542
VpaK11BI	GGWCC	1 cut(s)	96
XagI	CCTNNNNNAGG	1 cut(s)	620
XmaJI	CCTAGG	1 cut(s)	398
XspI	CTAG	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.