Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0021021

Physical Location & Seq

Genomic Coordinates Reverse (-)

63354299 .. 63355010

Gene Structure 712 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG428300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGCTATAACCACCTTCCCAACCATCGACAAATGCTCATCGAACGGCCGAGAAAACCACACGGTGGTTGCGGACATGGATGGGACCTTGCTAAGAGGCCGCAGCTCTTTTCCTTACTTTGCTCTCATTGCTTTTGAGGTCGGTGGGATTTTAAGGCTCCTATTCTTGCTCTTGGTCTCCCCATTAGCTGGAATCCTCTATTACTTCGTATCTGAATCGGCCGGAATCCAAGTTCTGATCTTCACAACATTTGCCGGTGTGAGGGTGTCTGAGATCGAGTCAGTGGCCCGTGCCGTGCTACCTAAGTTTTACTCGAGTGACATTCACCCTGAGTCGTGGCGCGTGCTCTCTACGTGCGAGAAGCGGTATATTCTTACTGCCAACCCTAGGATTATGGTGGAAGCATTTTGTAAGGATTTCCTTGGATTTGATACGGTTTTGGGGACTGAAATAGCAACCTACAAGGGTAAAGCCACTGGCTTTGTTTCTCCACCTGGTGTGCTTGTAGCAGAGAAGAAGGCTGATGCTCTTAAGAAGGCTTTTGGAGATGTACAGCCAGAGATTGGGCTTGGAGATAGACACACTGATATTCCTTTCATGGCACTTTGCAAGGTTCGTGATCTTATTATGTGGAACTTAAATATGAGTCAATTACATAACTGGCAGATACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009791 GO:0009908 GO:0009987 GO:0010143 GO:0016020 GO:0016311 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016791 GO:0022414 GO:0032501 GO:0032502 GO:0042578 GO:0043170 GO:0044237 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090447 GO:0090567 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

Acyltransferase HAD

Protein Analysis

224

Amino Acids

24.82

Weight (kDa)

6.9

Isoelectric Point (pI)

41.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAD_RAM2_N	PF23270	21 - 205	1.6e-59	Glycerol-3-phosphate acyltransferase RAM2-like, HAD-like domain
HAD	PF12710	22 - 200	3.2e-24	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021021)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08580
rosa_multiflora	Rmu_sc0000050.1_g000040
rosa_samantha	Rh4BG432200 Rh4CG446800 Rh4DG428300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	64, 188, 563
AccII	CGCG	1 cut(s)	342
AciI	CCGC	3 cut(s)	71, 100, 364
AcoI	YGGCCR	2 cut(s)	46, 219
AdeI	CACNNNGTG	2 cut(s)	64, 497
AfaI	GTAC	1 cut(s)	552
AfiI	CCNNNNNNNGG	5 cut(s)	64, 188, 261, 387, 563
AflII	CTTAAG	1 cut(s)	530
AjnI	CCWGG	1 cut(s)	493
AloI	GAACNNNNNNTCC	2 cut(s)	216, 248
AluBI	AGCT	2 cut(s)	105, 188
AluI	AGCT	2 cut(s)	105, 188
Alw21I	GWGCWC	1 cut(s)	348
Alw26I	GTCTC	1 cut(s)	181
Ama87I	CYCGRG	1 cut(s)	313
AoxI	GGCC	4 cut(s)	46, 97, 219, 285
ApeKI	GCWGC	1 cut(s)	102
AspA2I	CCTAGG	1 cut(s)	386
AspLEI	GCGC	1 cut(s)	342
AspS9I	GGNCC	2 cut(s)	84, 286
AsuHPI	GGTGA	1 cut(s)	317
AvaI	CYCGRG	1 cut(s)	313
AvaII	GGWCC	1 cut(s)	84
AvrII	CCTAGG	1 cut(s)	386
Bbv12I	GWGCWC	1 cut(s)	348
BbvI	GCAGC	1 cut(s)	114
BccI	CCATC	2 cut(s)	32, 74
BceAI	ACGGC	2 cut(s)	61, 278
BciT130I	CCWGG	1 cut(s)	495
BcoDI	GTCTC	1 cut(s)	181
BfaI	CTAG	1 cut(s)	387
BfrI	CTTAAG	1 cut(s)	530
BisI	GCNGC	2 cut(s)	100, 103
BlnI	CCTAGG	1 cut(s)	386
BlsI	GCNGC	2 cut(s)	101, 104
Bme1390I	CCNGG	1 cut(s)	495
Bme18I	GGWCC	1 cut(s)	84
BmeT110I	CYCGRG	1 cut(s)	313
BmgT120I	GGNCC	2 cut(s)	84, 286
BmiI	GGNNCC	2 cut(s)	85, 158
BmrFI	CCNGG	1 cut(s)	495
BmsI	GCATC	1 cut(s)	514
BsaAI	YACGTR	1 cut(s)	354
BsaI	GGTCTC	1 cut(s)	181
BsaJI	CCNNGG	2 cut(s)	386, 421
Bsc4I	CCNNNNNNNGG	5 cut(s)	64, 188, 261, 387, 563
Bse118I	RCCGGY	1 cut(s)	254
Bse1I	ACTGG	2 cut(s)	481, 665
Bse3DI	GCAATG	1 cut(s)	126
BseBI	CCWGG	1 cut(s)	495
BseDI	CCNNGG	2 cut(s)	386, 421
BseGI	GGATG	1 cut(s)	85
BseLI	CCNNNNNNNGG	5 cut(s)	64, 188, 261, 387, 563
BseMI	GCAATG	1 cut(s)	126
BseMII	CTCAG	2 cut(s)	261, 321
BseNI	ACTGG	2 cut(s)	481, 665
BseX3I	CGGCCG	2 cut(s)	46, 219
BseXI	GCAGC	1 cut(s)	114
Bsh1236I	CGCG	1 cut(s)	342
Bsh1285I	CGRYCG	2 cut(s)	49, 222
BshFI	GGCC	4 cut(s)	48, 99, 221, 287
BsiEI	CGRYCG	2 cut(s)	49, 222
BsiHKAI	GWGCWC	1 cut(s)	348
BsiHKCI	CYCGRG	1 cut(s)	313
BsiSI	CCGG	2 cut(s)	222, 255
BslFI	GGGAC	2 cut(s)	97, 457
BslI	CCNNNNNNNGG	5 cut(s)	64, 188, 261, 387, 563
BsmAI	GTCTC	1 cut(s)	181
BsmFI	GGGAC	2 cut(s)	97, 457
BsnI	GGCC	4 cut(s)	48, 99, 221, 287
Bso31I	GGTCTC	1 cut(s)	181
BsoBI	CYCGRG	1 cut(s)	313
Bsp1286I	GDGCHC	1 cut(s)	348
Bsp1407I	TGTACA	1 cut(s)	550
Bsp143I	GATC	3 cut(s)	237, 273, 619
BspACI	CCGC	3 cut(s)	71, 100, 364
BspANI	GGCC	4 cut(s)	48, 99, 221, 287
BspCNI	CTCAG	2 cut(s)	262, 322
BspFNI	CGCG	1 cut(s)	342
BspLI	GGNNCC	2 cut(s)	85, 158
BspTI	CTTAAG	1 cut(s)	530
BspTNI	GGTCTC	1 cut(s)	181
BsrDI	GCAATG	1 cut(s)	126
BsrFI	RCCGGY	1 cut(s)	254
BsrGI	TGTACA	1 cut(s)	550
BsrI	ACTGG	2 cut(s)	481, 665
BssAI	RCCGGY	1 cut(s)	254
BssECI	CCNNGG	2 cut(s)	386, 421
BssMI	GATC	3 cut(s)	237, 273, 619
BssT1I	CCWWGG	2 cut(s)	386, 421
Bst2UI	CCWGG	1 cut(s)	495
Bst4CI	ACNGT	2 cut(s)	64, 436
BstAFI	CTTAAG	1 cut(s)	530
BstAUI	TGTACA	1 cut(s)	550
BstBAI	YACGTR	1 cut(s)	354
BstC8I	GCNNGC	1 cut(s)	344
BstDEI	CTNAG	4 cut(s)	92, 270, 303, 330
BstF5I	GGATG	1 cut(s)	85
BstFNI	CGCG	1 cut(s)	342
BstHHI	GCGC	1 cut(s)	342
BstKTI	GATC	3 cut(s)	240, 276, 622
BstMAI	GTCTC	1 cut(s)	181
BstMBI	GATC	3 cut(s)	237, 273, 619
BstMCI	CGRYCG	2 cut(s)	49, 222
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstNI	CCWGG	1 cut(s)	495
BstSCI	CCNGG	1 cut(s)	493
BstUI	CGCG	1 cut(s)	342
BstV1I	GCAGC	1 cut(s)	114
BstZI	CGGCCG	2 cut(s)	46, 219
BsuRI	GGCC	4 cut(s)	48, 99, 221, 287
BtsCI	GGATG	1 cut(s)	85
BtsIMutI	CAGTG	3 cut(s)	288, 474, 582
Cac8I	GCNNGC	1 cut(s)	344
CfoI	GCGC	1 cut(s)	342
Cfr10I	RCCGGY	1 cut(s)	254
Cfr13I	GGNCC	2 cut(s)	84, 286
CsiI	ACCWGGT	1 cut(s)	493
Csp6I	GTAC	1 cut(s)	551
CspCI	CAANNNNNGTGG	2 cut(s)	463, 498
CviAII	CATG	2 cut(s)	76, 598
CviQI	GTAC	1 cut(s)	551
DdeI	CTNAG	4 cut(s)	92, 270, 303, 330
DpnI	GATC	3 cut(s)	239, 275, 621
DpnII	GATC	3 cut(s)	237, 273, 619
DraIII	CACNNNGTG	2 cut(s)	64, 497
EaeI	YGGCCR	2 cut(s)	46, 219
EagI	CGGCCG	2 cut(s)	46, 219
EclXI	CGGCCG	2 cut(s)	46, 219
Eco130I	CCWWGG	2 cut(s)	386, 421
Eco31I	GGTCTC	1 cut(s)	181
Eco47I	GGWCC	1 cut(s)	84
Eco52I	CGGCCG	2 cut(s)	46, 219
Eco88I	CYCGRG	1 cut(s)	313
EcoO109I	RGGNCCY	1 cut(s)	84
EcoRII	CCWGG	1 cut(s)	493
EcoT14I	CCWWGG	2 cut(s)	386, 421
ErhI	CCWWGG	2 cut(s)	386, 421
FaeI	CATG	2 cut(s)	79, 601
FaiI	YATR	9 cut(s)	8, 77, 369, 395, 599, 629, 644, 657, 673
FaqI	GGGAC	2 cut(s)	97, 457
FatI	CATG	2 cut(s)	75, 597
Fnu4HI	GCNGC	2 cut(s)	100, 103
FokI	GGATG	1 cut(s)	92
Fsp4HI	GCNGC	2 cut(s)	100, 103
FspBI	CTAG	1 cut(s)	387
GlaI	GCGC	1 cut(s)	341
GluI	GCNGC	2 cut(s)	100, 103
HaeIII	GGCC	4 cut(s)	48, 99, 221, 287
HapII	CCGG	2 cut(s)	222, 255
HhaI	GCGC	1 cut(s)	342
Hin1II	CATG	2 cut(s)	79, 601
Hin6I	GCGC	1 cut(s)	340
HinP1I	GCGC	1 cut(s)	340
HinfI	GANTC	6 cut(s)	192, 215, 225, 278, 332, 646
HpaII	CCGG	2 cut(s)	222, 255
HphI	GGTGA	1 cut(s)	317
Hpy188I	TCNGA	3 cut(s)	214, 237, 271
Hpy188III	TCNNGA	1 cut(s)	617
HpyAV	CCTTC	3 cut(s)	25, 511, 529
HpyCH4III	ACNGT	2 cut(s)	64, 436
HpyCH4IV	ACGT	1 cut(s)	353
HpyCH4V	TGCA	1 cut(s)	609
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	4 cut(s)	92, 270, 303, 330
HpySE526I	ACGT	1 cut(s)	353
Hsp92II	CATG	2 cut(s)	79, 601
HspAI	GCGC	1 cut(s)	340
Kzo9I	GATC	3 cut(s)	237, 273, 619
LmnI	GCTCC	1 cut(s)	162
LpnPI	CCDG	9 cut(s)	174, 235, 268, 342, 462, 480, 507, 570, 646
Lsp1109I	GCAGC	1 cut(s)	114
LweI	GCATC	1 cut(s)	514
MabI	ACCWGGT	1 cut(s)	493
MaeI	CTAG	1 cut(s)	387
MaeII	ACGT	1 cut(s)	353
MaeIII	GTNAC	1 cut(s)	317
MalI	GATC	3 cut(s)	239, 275, 621
MboI	GATC	3 cut(s)	237, 273, 619
MboII	GAAGA	2 cut(s)	232, 526
MhlI	GDGCHC	1 cut(s)	348
MluCI	AATT	1 cut(s)	650
MlyI	GAGTC	3 cut(s)	287, 341, 655
MnlI	CCTC	4 cut(s)	89, 130, 206, 255
MseI	TTAA	3 cut(s)	152, 531, 638
MspCI	CTTAAG	1 cut(s)	530
MspI	CCGG	2 cut(s)	222, 255
MspR9I	CCNGG	1 cut(s)	495
MvaI	CCWGG	1 cut(s)	495
MvnI	CGCG	1 cut(s)	342
MwoI	GCNNNNNNNGC	1 cut(s)	128
NdeII	GATC	3 cut(s)	237, 273, 619
NlaIII	CATG	2 cut(s)	79, 601
NlaIV	GGNNCC	2 cut(s)	85, 158
NmeAIII	GCCGAG	1 cut(s)	74
NmuCI	GTSAC	1 cut(s)	317
PaeR7I	CTCGAG	1 cut(s)	313
PfeI	GAWTC	3 cut(s)	192, 215, 225
PflMI	CCANNNNNTGG	3 cut(s)	64, 188, 563
PkrI	GCNGC	2 cut(s)	101, 104
PleI	GAGTC	3 cut(s)	286, 340, 654
PpsI	GAGTC	3 cut(s)	286, 340, 654
Ppu21I	YACGTR	1 cut(s)	354
PpuMI	RGGWCCY	1 cut(s)	84
Psp5II	RGGWCCY	1 cut(s)	84
Psp6I	CCWGG	1 cut(s)	493
PspGI	CCWGG	1 cut(s)	493
PspN4I	GGNNCC	2 cut(s)	85, 158
PspPI	GGNCC	2 cut(s)	84, 286
PspPPI	RGGWCCY	1 cut(s)	84
PspXI	VCTCGAGB	1 cut(s)	313
RsaI	GTAC	1 cut(s)	552
RsaNI	GTAC	1 cut(s)	551
SaqAI	TTAA	3 cut(s)	152, 531, 638
SatI	GCNGC	2 cut(s)	100, 103
Sau3AI	GATC	3 cut(s)	237, 273, 619
Sau96I	GGNCC	2 cut(s)	84, 286
SchI	GAGTC	3 cut(s)	287, 341, 655
ScrFI	CCNGG	1 cut(s)	495
SduI	GDGCHC	1 cut(s)	348
SexAI	ACCWGGT	1 cut(s)	493
SfaNI	GCATC	1 cut(s)	514
Sfr274I	CTCGAG	1 cut(s)	313
SinI	GGWCC	1 cut(s)	84
SlaI	CTCGAG	1 cut(s)	313
SmlI	CTYRAG	2 cut(s)	313, 530
SmoI	CTYRAG	2 cut(s)	313, 530
Sse9I	AATT	1 cut(s)	650
SsiI	CCGC	3 cut(s)	71, 100, 364
SspMI	CTAG	1 cut(s)	387
StyD4I	CCNGG	1 cut(s)	493
StyI	CCWWGG	2 cut(s)	386, 421
TaaI	ACNGT	2 cut(s)	64, 436
TaiI	ACGT	1 cut(s)	356
TaqI	TCGA	4 cut(s)	27, 41, 276, 314
TasI	AATT	1 cut(s)	650
TatI	WGTACW	1 cut(s)	550
TauI	GCSGC	1 cut(s)	102
TfiI	GAWTC	3 cut(s)	192, 215, 225
Tru1I	TTAA	3 cut(s)	152, 531, 638
Tru9I	TTAA	3 cut(s)	152, 531, 638
TscAI	CASTG	3 cut(s)	288, 481, 589
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	1 cut(s)	102
Tsp45I	GTSAC	1 cut(s)	317
TspDTI	ATGAA	1 cut(s)	586
TspRI	CASTG	3 cut(s)	288, 481, 589
Van91I	CCANNNNNTGG	3 cut(s)	64, 188, 563
Vha464I	CTTAAG	1 cut(s)	530
VpaK11BI	GGWCC	1 cut(s)	84
XhoI	CTCGAG	1 cut(s)	313
XmaJI	CCTAGG	1 cut(s)	386
XspI	CTAG	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.