Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0017241

Physical Location & Seq

Genomic Coordinates Forward (+)

12411178 .. 12413167

Gene Structure 1990 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g14100.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGCGCTGTTTATCTTAATCACCGTGGCACTACTGCTATCCGTTTTTGCGTTCTCAGCTTTCTTTGTGCTGCGATCATGGACTTCATCACCGAAAAGCATGGTGGGAATCCCAGGCAGCTTGGGATGGCCTATTGTTGGAGAAAGCTTCTCATTTATATCAGAGTTCTCAAGTCCATCTGGTATATACAGCTTCATGCACAAGAGGCAGCAGAGGTATGGTAAAGTGTTCAAGACTTTTGTCTTGGGTAGATTCAGTGTGTTCATGACCGGGAGAGAAGCAAGTAAGATGTTGTTAGCAGGAAGAGACGGAATGGTAAGCTTAAACCTGTTCTACACAGGACAGCAGGTGCTAGGTCCAACCAGCTTGCTACAAACTACCGGAGAAGAGCACAAACGGCTTAGACGGCTGATTGCTGAGCCTCTATCGGTTGATGGCCTAAAAAAATATTTTCAGTTTATTAATAACCTGGCAATTGAAATATTAGAAGATTGGCCTGGCCGAACTGTTTTTGTCCTTGAAGAAGCTTCTACATTCACTCTCAAAGTTATTGGTAACATGATCATGAGCTTGGAGCCTGCAGGTGAAGAACAAGAGAAATTCCGAGCCAATTTTAAACTCATTTCTTCCTCCTTTGCATCCTTGCCATTCAAAATCCCTGGAACAGCTTTTCATTCTGGTATTCAGGCACGAGATAGGATGTATGCAATGTTAGACTCGGCAATTTCTAAAAGGAGAAATGGAGAAGGATTCCAACAAGACTTCTTGGAATCACTGATAATGAAACATAGCAAACTAGCAGGCAGTGAAGATAATAAGGATAAATTGACTGACAAACAATTGAAGGACAATGTATTAACTCTACTGGTTGCAGGTCATGATACCACAACTGCTGCTCTCACATGGCTCATCAAGTTCCTTGGAGAAAATCCTGTTGTCCTGGAACAACTAAGAGATGAGCACAGACAAATTCAAGCAAACCGCGATGGAGTCAATCTAACTTGGTCCGAAGTTAACAACATGCCTTACACCGCCAAGGTAAACAGTGTATCAATACTCAGAAGTCAGAACCTTAATGTAATAATATTGTCAATTATAAACTCAAGCATTGTTCATTGTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0006066 GO:0006082 GO:0006629 GO:0006694 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009639 GO:0009687 GO:0009987 GO:0010035 GO:0010268 GO:0010295 GO:0010817 GO:0016042 GO:0016054 GO:0016107 GO:0016115 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016705 GO:0016709 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042592 GO:0043288 GO:0043290 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0046164 GO:0046345 GO:0046395 GO:0048856 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072329 GO:1901360 GO:1901362 GO:1901575 GO:1901576 GO:1901615 GO:1901616 GO:1901617 GO:1901700 GO:1902644

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

p450

Protein Analysis

375

Amino Acids

41.9

Weight (kDa)

9.21

Isoelectric Point (pI)

43.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	38 - 347	5e-30	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0017241)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14100
malus_domestica	MD05G1021700.v1.1
prunus_persica	Prupe.8G026100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0276191
rosa_laevigata	RLG00000013411
rosa_multiflora	Rmu_ssc0000201.1_g000015
rosa_roxburghii	Rroxscaffold_7G00192500
rosa_rugosa	Rorug06G0098800
rosa_samantha	Rh6AG210600 Rh6BG214800 Rh6CG217600 Rh6DG207100
rosa_wichuraiana	Rw6G018350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1097
AarI	CACCTGC	2 cut(s)	337, 572
Acc36I	ACCTGC	3 cut(s)	337, 572, 863
AccII	CGCG	1 cut(s)	984
AciI	CCGC	2 cut(s)	982, 1032
AcoI	YGGCCR	1 cut(s)	499
AcsI	RAATTY	2 cut(s)	599, 969
AfiI	CCNNNNNNNGG	1 cut(s)	137
AgsI	TTSAA	6 cut(s)	232, 479, 521, 652, 844, 974
AjnI	CCWGG	5 cut(s)	112, 468, 496, 658, 939
AluBI	AGCT	9 cut(s)	59, 120, 147, 192, 321, 366, 527, 570, 668
AluI	AGCT	9 cut(s)	59, 120, 147, 192, 321, 366, 527, 570, 668
Alw21I	GWGCWC	2 cut(s)	393, 963
Alw26I	GTCTC	1 cut(s)	300
AoxI	GGCC	4 cut(s)	128, 436, 494, 499
ApeKI	GCWGC	4 cut(s)	70, 117, 208, 893
ApoI	RAATTY	2 cut(s)	599, 969
AseI	ATTAAT	1 cut(s)	462
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	2 cut(s)	356, 1005
AsuC2I	CCSGG	1 cut(s)	271
AsuHPI	GGTGA	3 cut(s)	13, 81, 596
AvaII	GGWCC	2 cut(s)	356, 1005
BauI	CACGAG	1 cut(s)	690
Bbv12I	GWGCWC	2 cut(s)	393, 963
BbvI	GCAGC	4 cut(s)	57, 129, 220, 880
BccI	CCATC	4 cut(s)	120, 184, 428, 980
BceAI	ACGGC	2 cut(s)	413, 422
BciT130I	CCWGG	5 cut(s)	114, 470, 498, 660, 941
BclI	TGATCA	1 cut(s)	561
BcnI	CCSGG	1 cut(s)	271
BcoDI	GTCTC	1 cut(s)	300
BfaI	CTAG	2 cut(s)	353, 797
BfmI	CTRYAG	1 cut(s)	579
BfoI	RGCGCY	1 cut(s)	8
BfuAI	ACCTGC	3 cut(s)	337, 572, 863
BisI	GCNGC	4 cut(s)	71, 118, 209, 894
BlpI	GCTNAGC	1 cut(s)	417
BlsI	GCNGC	4 cut(s)	72, 119, 210, 895
Bme1390I	CCNGG	6 cut(s)	114, 271, 470, 498, 660, 941
Bme18I	GGWCC	2 cut(s)	356, 1005
BmgT120I	GGNCC	2 cut(s)	356, 1005
BmiI	GGNNCC	1 cut(s)	576
BmrFI	CCNGG	6 cut(s)	114, 271, 470, 498, 660, 941
BmsI	GCATC	1 cut(s)	647
BoxI	GACNNNNGTC	1 cut(s)	239
Bpu1102I	GCTNAGC	1 cut(s)	417
BpuEI	CTTGAG	2 cut(s)	154, 1087
BpuMI	CCSGG	1 cut(s)	271
BsaJI	CCNNGG	5 cut(s)	24, 112, 658, 919, 1035
BsaWI	WCCGGW	1 cut(s)	380
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
Bse1I	ACTGG	1 cut(s)	870
Bse3DI	GCAATG	1 cut(s)	714
BseBI	CCWGG	5 cut(s)	114, 470, 498, 660, 941
BseDI	CCNNGG	5 cut(s)	24, 112, 658, 919, 1035
BseGI	GGATG	3 cut(s)	131, 638, 705
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMI	GCAATG	1 cut(s)	714
BseMII	CTCAG	3 cut(s)	69, 408, 1072
BseNI	ACTGG	1 cut(s)	870
BseXI	GCAGC	4 cut(s)	57, 129, 220, 880
Bsh1236I	CGCG	1 cut(s)	984
BshFI	GGCC	4 cut(s)	130, 438, 496, 501
BsiHKAI	GWGCWC	2 cut(s)	393, 963
BsiSI	CCGG	2 cut(s)	270, 381
BslI	CCNNNNNNNGG	1 cut(s)	137
BsmAI	GTCTC	1 cut(s)	300
BsmBI	CGTCTC	1 cut(s)	300
BsnI	GGCC	4 cut(s)	130, 438, 496, 501
Bsp1286I	GDGCHC	2 cut(s)	393, 963
Bsp143I	GATC	2 cut(s)	74, 561
Bsp1720I	GCTNAGC	1 cut(s)	417
BspACI	CCGC	2 cut(s)	982, 1032
BspANI	GGCC	4 cut(s)	130, 438, 496, 501
BspCNI	CTCAG	3 cut(s)	68, 409, 1071
BspFNI	CGCG	1 cut(s)	984
BspHI	TCATGA	3 cut(s)	264, 564, 877
BspLI	GGNNCC	1 cut(s)	576
BspMAI	CTGCAG	1 cut(s)	583
BspMI	ACCTGC	3 cut(s)	337, 572, 863
BspQI	GCTCTTC	1 cut(s)	381
BsrDI	GCAATG	1 cut(s)	714
BsrI	ACTGG	1 cut(s)	870
BssECI	CCNNGG	5 cut(s)	24, 112, 658, 919, 1035
BssMI	GATC	2 cut(s)	74, 561
BssSI	CACGAG	1 cut(s)	690
BssT1I	CCWWGG	2 cut(s)	919, 1035
Bst2BI	CACGAG	1 cut(s)	690
Bst2UI	CCWGG	5 cut(s)	114, 470, 498, 660, 941
Bst4CI	ACNGT	3 cut(s)	25, 508, 1046
Bst6I	CTCTTC	2 cut(s)	298, 381
BstC8I	GCNNGC	3 cut(s)	368, 579, 802
BstDEI	CTNAG	5 cut(s)	55, 401, 417, 950, 1058
BstDSI	CCRYGG	1 cut(s)	24
BstF5I	GGATG	3 cut(s)	131, 638, 705
BstFNI	CGCG	1 cut(s)	984
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	2 cut(s)	77, 564
BstMAI	GTCTC	1 cut(s)	300
BstMBI	GATC	2 cut(s)	74, 561
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 205, 397, 406
BstNI	CCWGG	5 cut(s)	114, 470, 498, 660, 941
BstNSI	RCATGY	1 cut(s)	1024
BstPAI	GACNNNNGTC	1 cut(s)	239
BstSCI	CCNGG	6 cut(s)	112, 269, 468, 496, 658, 939
BstSFI	CTRYAG	1 cut(s)	579
BstUI	CGCG	1 cut(s)	984
BstV1I	GCAGC	4 cut(s)	57, 129, 220, 880
BsuRI	GGCC	4 cut(s)	130, 438, 496, 501
BtgI	CCRYGG	1 cut(s)	24
BtgZI	GCGATG	1 cut(s)	999
BtsCI	GGATG	3 cut(s)	131, 638, 705
BtsI	GCAGTG	1 cut(s)	811
BtsIMutI	CAGTG	4 cut(s)	262, 773, 811, 1051
BveI	ACCTGC	3 cut(s)	337, 572, 863
Cac8I	GCNNGC	3 cut(s)	368, 579, 802
CciI	TCATGA	3 cut(s)	264, 564, 877
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	2 cut(s)	356, 1005
CviAII	CATG	9 cut(s)	78, 100, 196, 265, 559, 565, 878, 903, 1021
DdeI	CTNAG	5 cut(s)	55, 401, 417, 950, 1058
DpnI	GATC	2 cut(s)	76, 563
DpnII	GATC	2 cut(s)	74, 561
DraI	TTTAAA	1 cut(s)	616
EaeI	YGGCCR	1 cut(s)	499
Eam1104I	CTCTTC	2 cut(s)	298, 381
EarI	CTCTTC	2 cut(s)	298, 381
Eco130I	CCWWGG	2 cut(s)	919, 1035
Eco47I	GGWCC	2 cut(s)	356, 1005
EcoRII	CCWGG	5 cut(s)	112, 468, 496, 658, 939
EcoT14I	CCWWGG	2 cut(s)	919, 1035
ErhI	CCWWGG	2 cut(s)	919, 1035
Esp3I	CGTCTC	1 cut(s)	300
FaeI	CATG	9 cut(s)	81, 103, 199, 268, 562, 568, 881, 906, 1024
FatI	CATG	9 cut(s)	77, 99, 195, 264, 558, 564, 877, 902, 1020
FbaI	TGATCA	1 cut(s)	561
Fnu4HI	GCNGC	4 cut(s)	71, 118, 209, 894
FokI	GGATG	3 cut(s)	138, 625, 712
Fsp4HI	GCNGC	4 cut(s)	71, 118, 209, 894
FspBI	CTAG	2 cut(s)	353, 797
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	4 cut(s)	71, 118, 209, 894
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	4 cut(s)	130, 438, 496, 501
HapII	CCGG	2 cut(s)	270, 381
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	9 cut(s)	81, 103, 199, 268, 562, 568, 881, 906, 1024
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	1015
HindII	GTYRAC	1 cut(s)	1015
HindIII	AAGCTT	3 cut(s)	145, 319, 525
HinfI	GANTC	6 cut(s)	108, 252, 716, 750, 770, 990
HpaI	GTTAAC	1 cut(s)	1015
HpaII	CCGG	2 cut(s)	270, 381
HphI	GGTGA	3 cut(s)	13, 81, 596
Hpy166II	GTNNAC	2 cut(s)	1015, 1042
Hpy188I	TCNGA	5 cut(s)	163, 605, 1009, 1061, 1068
Hpy188III	TCNNGA	4 cut(s)	232, 265, 565, 878
Hpy8I	GTNNAC	2 cut(s)	1015, 1042
HpyAV	CCTTC	2 cut(s)	740, 838
HpyCH4III	ACNGT	3 cut(s)	25, 508, 1046
HpyCH4V	TGCA	5 cut(s)	199, 581, 638, 707, 872
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 205, 397, 406
HpyF3I	CTNAG	5 cut(s)	55, 401, 417, 950, 1058
Hsp92II	CATG	9 cut(s)	81, 103, 199, 268, 562, 568, 881, 906, 1024
HspAI	GCGC	1 cut(s)	5
Ksp22I	TGATCA	1 cut(s)	561
KspAI	GTTAAC	1 cut(s)	1015
Kzo9I	GATC	2 cut(s)	74, 561
LguI	GCTCTTC	1 cut(s)	381
LmnI	GCTCC	1 cut(s)	574
Lsp1109I	GCAGC	4 cut(s)	57, 129, 220, 880
LweI	GCATC	1 cut(s)	647
MaeI	CTAG	2 cut(s)	353, 797
MaeIII	GTNAC	1 cut(s)	554
MalI	GATC	2 cut(s)	76, 563
MboI	GATC	2 cut(s)	74, 561
MboII	GAAGA	7 cut(s)	315, 398, 500, 533, 599, 618, 821
MfeI	CAATTG	2 cut(s)	474, 839
MhlI	GDGCHC	2 cut(s)	393, 963
MluCI	AATT	8 cut(s)	474, 599, 610, 723, 824, 839, 969, 1092
MlyI	GAGTC	2 cut(s)	710, 999
MmeI	TCCRAC	3 cut(s)	118, 383, 778
MnlI	CCTC	4 cut(s)	198, 207, 432, 640
MseI	TTAA	7 cut(s)	17, 323, 462, 615, 857, 1014, 1074
MslI	CAYNNNNRTG	1 cut(s)	563
MspI	CCGG	2 cut(s)	270, 381
MspR9I	CCNGG	6 cut(s)	114, 271, 470, 498, 660, 941
MunI	CAATTG	2 cut(s)	474, 839
MvaI	CCWGG	5 cut(s)	114, 470, 498, 660, 941
MvnI	CGCG	1 cut(s)	984
MwoI	GCNNNNNNNGC	4 cut(s)	56, 205, 397, 406
NciI	CCSGG	1 cut(s)	271
NdeII	GATC	2 cut(s)	74, 561
NlaIII	CATG	9 cut(s)	81, 103, 199, 268, 562, 568, 881, 906, 1024
NlaIV	GGNNCC	1 cut(s)	576
NmeAIII	GCCGAG	1 cut(s)	698
NspI	RCATGY	1 cut(s)	1024
PagI	TCATGA	3 cut(s)	264, 564, 877
PaqCI	CACCTGC	2 cut(s)	337, 572
PciSI	GCTCTTC	1 cut(s)	381
PfeI	GAWTC	4 cut(s)	108, 252, 750, 770
PfoI	TCCNGGA	1 cut(s)	939
PkrI	GCNGC	4 cut(s)	72, 119, 210, 895
PleI	GAGTC	2 cut(s)	710, 998
PpsI	GAGTC	2 cut(s)	710, 998
PshAI	GACNNNNGTC	1 cut(s)	239
PshBI	ATTAAT	1 cut(s)	462
PsiI	TTATAA	1 cut(s)	1097
Psp6I	CCWGG	5 cut(s)	112, 468, 496, 658, 939
PspGI	CCWGG	5 cut(s)	112, 468, 496, 658, 939
PspN4I	GGNNCC	1 cut(s)	576
PspPI	GGNCC	2 cut(s)	356, 1005
PstI	CTGCAG	1 cut(s)	583
RseI	CAYNNNNRTG	1 cut(s)	563
SapI	GCTCTTC	1 cut(s)	381
SaqAI	TTAA	7 cut(s)	17, 323, 462, 615, 857, 1014, 1074
SatI	GCNGC	4 cut(s)	71, 118, 209, 894
Sau3AI	GATC	2 cut(s)	74, 561
Sau96I	GGNCC	2 cut(s)	356, 1005
SbfI	CCTGCAGG	1 cut(s)	583
SchI	GAGTC	2 cut(s)	710, 999
ScrFI	CCNGG	6 cut(s)	114, 271, 470, 498, 660, 941
SdaI	CCTGCAGG	1 cut(s)	583
SduI	GDGCHC	2 cut(s)	393, 963
SfaNI	GCATC	1 cut(s)	647
SfcI	CTRYAG	1 cut(s)	579
SinI	GGWCC	2 cut(s)	356, 1005
SmiMI	CAYNNNNRTG	1 cut(s)	563
SmlI	CTYRAG	2 cut(s)	169, 1102
SmoI	CTYRAG	2 cut(s)	169, 1102
Sse8387I	CCTGCAGG	1 cut(s)	583
Sse9I	AATT	8 cut(s)	474, 599, 610, 723, 824, 839, 969, 1092
SsiI	CCGC	2 cut(s)	982, 1032
SspI	AATATT	3 cut(s)	449, 483, 1086
SspMI	CTAG	2 cut(s)	353, 797
StyD4I	CCNGG	6 cut(s)	112, 269, 468, 496, 658, 939
StyI	CCWWGG	2 cut(s)	919, 1035
TaaI	ACNGT	3 cut(s)	25, 508, 1046
TasI	AATT	8 cut(s)	474, 599, 610, 723, 824, 839, 969, 1092
TfiI	GAWTC	4 cut(s)	108, 252, 750, 770
Tru1I	TTAA	7 cut(s)	17, 323, 462, 615, 857, 1014, 1074
Tru9I	TTAA	7 cut(s)	17, 323, 462, 615, 857, 1014, 1074
TscAI	CASTG	4 cut(s)	262, 780, 811, 1051
TseI	GCWGC	4 cut(s)	70, 117, 208, 893
TspDTI	ATGAA	6 cut(s)	75, 184, 253, 662, 797, 1103
TspGWI	ACGGA	2 cut(s)	31, 324
TspRI	CASTG	4 cut(s)	262, 780, 811, 1051
VpaK11BI	GGWCC	2 cut(s)	356, 1005
VspI	ATTAAT	1 cut(s)	462
XapI	RAATTY	2 cut(s)	599, 969
XceI	RCATGY	1 cut(s)	1024
XspI	CTAG	2 cut(s)	353, 797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.