Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003092

Physical Location & Seq

Genomic Coordinates Reverse (-)

13175944 .. 13180784

Gene Structure 4841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0098800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGTGAGAAAGAATGGTGTCAAGGAAAAGAGGCCTTCCTTCTTCAAGGTTATTCTTCCAGGTTACTCCACTGAACGTCTCAGGATTCCACCGCAGTTCTTGAAGCATCTTAGGAAGGATCTATGTAGCAAGGCAACTTTGAGCTTGAACATGTCTTCACAGTGTTCATGGAATGTGAAAGTGACTAAAACAAAGAAAGATGTGTATTTCAAGGATGGGTGGCAGGAGTTTTTAAACAATAATTCAGTGGATGAAGGCGACTTCCTAGTGTTCACCTATGAAGGGAAAATGCATTTCAGCATAGCGGTTTTCAACAGGAGTTGTTGTGAAAGAGTCAATTTTCCTAATGGAACATTCAAAGAATCCATAGTTGCTACGACTACTATAAGGCCTTGTGGTAGACCAAGAAAAGATAACTCAGATAACACAGCTAAGGAATCTGCTATATCTTTCAAATCCAAGTTTCCTCATTACAAAAGTACTATTAAGAAAACTTATTGTGTGTACTCAATTCCCACCACCTTCTACAGGGAGCATCTTTCTGCAGGCAAATATGAATTTGCTTTCCTGAAGATCTCAGGGGGAAACAAATGGTACAAAGTGAAGCTTGTCCCTTCCATTCGAACAGCCTTCATGTCAAAAGGGTGGGCTGCGTTCGCACGTGATAACCAGATCAAGGTTGGACATGTTTGCATTTTCGAGCTTGTGAAAGAGAACAAAATGGTGGTTCACAATTTAACATTCTCCGGAAATGATCAAGTTCAAGCTATTAACAGCATCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0006066 GO:0006082 GO:0006629 GO:0006694 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009639 GO:0009687 GO:0009987 GO:0010035 GO:0010268 GO:0010295 GO:0010817 GO:0016042 GO:0016054 GO:0016107 GO:0016115 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016705 GO:0016709 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042592 GO:0043288 GO:0043290 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0046164 GO:0046345 GO:0046395 GO:0048856 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072329 GO:1901360 GO:1901362 GO:1901575 GO:1901576 GO:1901615 GO:1901616 GO:1901617 GO:1901700 GO:1902644

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

p450

Protein Analysis

261

Amino Acids

29.99

Weight (kDa)

9.75

Isoelectric Point (pI)

28.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	14 - 106	1.2e-16	B3 DNA binding domain
B3	PF02362	167 - 243	1.1e-10	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45577 AT3G45590 AT3G45590 AT5G60230 AT5G60230
fragaria_vesca	FvH4_2g14101 FvH4_2g14101 FvH4_2g14101 FvH4_2g14101 FvH4_2g14101 FvH4_2g14101 FvH4_2g14101
rosa_chinensis	RchiOBHm_Chr6g0276201
rosa_laevigata	RLG00000013409 RLG00000025847
rosa_multiflora	Rmu_sc0002063.1_g000007 Rmu_sc0004048.1_g000016 Rmu_sc0008839.1_g000006
rosa_roxburghii	Rroxscaffold_2G00125430 Rroxscaffold_7G00192490
rosa_rugosa	Rorug06G0098800 Rorug06G0098900 Rorug06G0098900 Rorug06G0099000 Rorug06G0099100 Rorug06G0099200 Rorug06G0099300 Rorug06G0124300
rosa_samantha	Rh1AG171200 Rh3BG017000 Rh3DG017300 Rh5BG538000 Rh5CG561900 Rh6AG210700 Rh6BG214900 Rh6DG207200
rosa_wichuraiana	Rw6G018360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	400
AccIII	TCCGGA	1 cut(s)	746
AciI	CCGC	2 cut(s)	92, 305
AclWI	GGATC	1 cut(s)	126
AcsI	RAATTY	1 cut(s)	557
AcuI	CTGAAG	1 cut(s)	590
AcvI	CACGTG	1 cut(s)	662
AfaI	GTAC	3 cut(s)	481, 506, 596
AfiI	CCNNNNNNNGG	3 cut(s)	282, 528, 676
AflIII	ACRYGT	2 cut(s)	150, 685
AgsI	TTSAA	8 cut(s)	46, 103, 148, 211, 313, 358, 454, 764
AjnI	CCWGG	1 cut(s)	58
AluBI	AGCT	5 cut(s)	144, 431, 607, 703, 767
AluI	AGCT	5 cut(s)	144, 431, 607, 703, 767
Alw26I	GTCTC	1 cut(s)	83
AlwI	GGATC	1 cut(s)	126
AlwNI	CAGNNNCTG	1 cut(s)	780
Aor13HI	TCCGGA	1 cut(s)	746
AoxI	GGCC	2 cut(s)	32, 389
ApeKI	GCWGC	1 cut(s)	650
ApoI	RAATTY	1 cut(s)	557
AsuHPI	GGTGA	2 cut(s)	16, 265
AsuII	TTCGAA	1 cut(s)	622
BbrPI	CACGTG	1 cut(s)	662
BbsI	GAAGAC	1 cut(s)	147
BbvI	GCAGC	1 cut(s)	637
BccI	CCATC	1 cut(s)	209
BciT130I	CCWGG	1 cut(s)	60
BclI	TGATCA	1 cut(s)	754
BcoDI	GTCTC	1 cut(s)	83
BfaI	CTAG	1 cut(s)	266
BfmI	CTRYAG	2 cut(s)	526, 543
BglII	AGATCT	1 cut(s)	573
BisI	GCNGC	1 cut(s)	651
BlsI	GCNGC	1 cut(s)	652
BmcAI	AGTACT	1 cut(s)	481
Bme1390I	CCNGG	1 cut(s)	60
BmrFI	CCNGG	1 cut(s)	60
BmsI	GCATC	2 cut(s)	115, 544
BpiI	GAAGAC	1 cut(s)	147
Bpu10I	CCTNAGC	1 cut(s)	432
Bpu14I	TTCGAA	1 cut(s)	622
BsaAI	YACGTR	1 cut(s)	662
BsaWI	WCCGGW	1 cut(s)	746
BsaXI	ACNNNNNCTCC	2 cut(s)	310, 340
Bsc4I	CCNNNNNNNGG	3 cut(s)	282, 528, 676
BseAI	TCCGGA	1 cut(s)	746
BseBI	CCWGG	1 cut(s)	60
BseGI	GGATG	2 cut(s)	220, 256
BseLI	CCNNNNNNNGG	3 cut(s)	282, 528, 676
BseMII	CTCAG	3 cut(s)	94, 432, 591
BseXI	GCAGC	1 cut(s)	637
BshFI	GGCC	2 cut(s)	34, 391
BsiSI	CCGG	1 cut(s)	747
BslFI	GGGAC	1 cut(s)	596
BslI	CCNNNNNNNGG	3 cut(s)	282, 528, 676
BsmAI	GTCTC	1 cut(s)	83
BsmBI	CGTCTC	1 cut(s)	83
BsmFI	GGGAC	1 cut(s)	596
BsnI	GGCC	2 cut(s)	34, 391
Bsp119I	TTCGAA	1 cut(s)	622
Bsp13I	TCCGGA	1 cut(s)	746
Bsp143I	GATC	4 cut(s)	118, 573, 672, 754
BspACI	CCGC	2 cut(s)	92, 305
BspANI	GGCC	2 cut(s)	34, 391
BspCNI	CTCAG	3 cut(s)	93, 431, 590
BspEI	TCCGGA	1 cut(s)	746
BspMAI	CTGCAG	1 cut(s)	547
BspPI	GGATC	1 cut(s)	126
BspT104I	TTCGAA	1 cut(s)	622
BssMI	GATC	4 cut(s)	118, 573, 672, 754
Bst2UI	CCWGG	1 cut(s)	60
Bst4CI	ACNGT	1 cut(s)	162
BstBAI	YACGTR	1 cut(s)	662
BstBI	TTCGAA	1 cut(s)	622
BstC8I	GCNNGC	1 cut(s)	547
BstDEI	CTNAG	5 cut(s)	80, 110, 418, 432, 577
BstENI	CCTNNNNNAGG	1 cut(s)	526
BstF5I	GGATG	2 cut(s)	220, 256
BstKTI	GATC	4 cut(s)	121, 576, 675, 757
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	4 cut(s)	118, 573, 672, 754
BstMWI	GCNNNNNNNGC	1 cut(s)	656
BstNI	CCWGG	1 cut(s)	60
BstNSI	RCATGY	2 cut(s)	154, 689
BstSCI	CCNGG	1 cut(s)	58
BstSFI	CTRYAG	2 cut(s)	526, 543
BstV1I	GCAGC	1 cut(s)	637
BstV2I	GAAGAC	1 cut(s)	147
BstX2I	RGATCY	2 cut(s)	118, 573
BstYI	RGATCY	2 cut(s)	118, 573
BsuRI	GGCC	2 cut(s)	34, 391
BtsCI	GGATG	2 cut(s)	220, 256
BtsIMutI	CAGTG	3 cut(s)	69, 167, 252
Cac8I	GCNNGC	1 cut(s)	547
CaiI	CAGNNNCTG	1 cut(s)	780
Csp6I	GTAC	3 cut(s)	480, 505, 595
CviAII	CATG	4 cut(s)	151, 168, 634, 686
CviJI	RGCY	9 cut(s)	34, 144, 391, 431, 607, 629, 650, 703, 767
CviKI_1	RGCY	9 cut(s)	34, 144, 391, 431, 607, 629, 650, 703, 767
CviQI	GTAC	3 cut(s)	480, 505, 595
DdeI	CTNAG	5 cut(s)	80, 110, 418, 432, 577
DpnI	GATC	4 cut(s)	120, 575, 674, 756
DpnII	GATC	4 cut(s)	118, 573, 672, 754
DraI	TTTAAA	1 cut(s)	234
Eco147I	AGGCCT	2 cut(s)	34, 391
Eco57I	CTGAAG	1 cut(s)	590
Eco72I	CACGTG	1 cut(s)	662
EcoNI	CCTNNNNNAGG	1 cut(s)	526
EcoRII	CCWGG	1 cut(s)	58
EcoT22I	ATGCAT	1 cut(s)	294
Esp3I	CGTCTC	1 cut(s)	83
FaeI	CATG	4 cut(s)	154, 171, 637, 689
FalI	AAGNNNNNCTT	2 cut(s)	591, 623
FaqI	GGGAC	1 cut(s)	596
FatI	CATG	4 cut(s)	150, 167, 633, 685
FbaI	TGATCA	1 cut(s)	754
FblI	GTMKAC	1 cut(s)	400
Fnu4HI	GCNGC	1 cut(s)	651
FokI	GGATG	2 cut(s)	227, 263
Fsp4HI	GCNGC	1 cut(s)	651
FspBI	CTAG	1 cut(s)	266
GluI	GCNGC	1 cut(s)	651
HaeIII	GGCC	2 cut(s)	34, 391
HapII	CCGG	1 cut(s)	747
Hin1II	CATG	4 cut(s)	154, 171, 637, 689
HindIII	AAGCTT	1 cut(s)	605
HinfI	GANTC	4 cut(s)	85, 333, 362, 437
HpaII	CCGG	1 cut(s)	747
HphI	GGTGA	2 cut(s)	16, 265
Hpy166II	GTNNAC	4 cut(s)	273, 401, 505, 730
Hpy188I	TCNGA	1 cut(s)	421
Hpy188III	TCNNGA	4 cut(s)	82, 100, 568, 747
Hpy8I	GTNNAC	4 cut(s)	273, 401, 505, 730
HpyAV	CCTTC	8 cut(s)	45, 49, 109, 248, 275, 532, 624, 640
HpyCH4III	ACNGT	1 cut(s)	162
HpyCH4IV	ACGT	2 cut(s)	76, 661
HpyCH4V	TGCA	3 cut(s)	292, 545, 693
HpyF10VI	GCNNNNNNNGC	1 cut(s)	656
HpyF3I	CTNAG	5 cut(s)	80, 110, 418, 432, 577
HpySE526I	ACGT	2 cut(s)	76, 661
Hsp92II	CATG	4 cut(s)	154, 171, 637, 689
Kpn2I	TCCGGA	1 cut(s)	746
Ksp22I	TGATCA	1 cut(s)	754
Kzo9I	GATC	4 cut(s)	118, 573, 672, 754
LmnI	GCTCC	1 cut(s)	532
Lsp1109I	GCAGC	1 cut(s)	637
LweI	GCATC	2 cut(s)	115, 544
MaeI	CTAG	1 cut(s)	266
MaeII	ACGT	2 cut(s)	76, 661
MaeIII	GTNAC	2 cut(s)	62, 181
MalI	GATC	4 cut(s)	120, 575, 674, 756
MboI	GATC	4 cut(s)	118, 573, 672, 754
MboII	GAAGA	4 cut(s)	34, 47, 147, 583
MflI	RGATCY	2 cut(s)	118, 573
MluCI	AATT	5 cut(s)	241, 337, 510, 557, 733
MlyI	GAGTC	1 cut(s)	342
MmeI	TCCRAC	1 cut(s)	661
MnlI	CCTC	2 cut(s)	24, 477
Mph1103I	ATGCAT	1 cut(s)	294
MroI	TCCGGA	1 cut(s)	746
MseI	TTAA	4 cut(s)	233, 486, 737, 771
MspI	CCGG	1 cut(s)	747
MspR9I	CCNGG	1 cut(s)	60
MvaI	CCWGG	1 cut(s)	60
MwoI	GCNNNNNNNGC	1 cut(s)	656
NdeII	GATC	4 cut(s)	118, 573, 672, 754
NlaIII	CATG	4 cut(s)	154, 171, 637, 689
NmuCI	GTSAC	1 cut(s)	181
NsiI	ATGCAT	1 cut(s)	294
NspI	RCATGY	2 cut(s)	154, 689
NspV	TTCGAA	1 cut(s)	622
PceI	AGGCCT	2 cut(s)	34, 391
PciI	ACATGT	2 cut(s)	150, 685
PfeI	GAWTC	3 cut(s)	85, 362, 437
PkrI	GCNGC	1 cut(s)	652
PleI	GAGTC	1 cut(s)	341
PmaCI	CACGTG	1 cut(s)	662
PmlI	CACGTG	1 cut(s)	662
PpsI	GAGTC	1 cut(s)	341
Ppu21I	YACGTR	1 cut(s)	662
PscI	ACATGT	2 cut(s)	150, 685
Psp6I	CCWGG	1 cut(s)	58
PspCI	CACGTG	1 cut(s)	662
PspGI	CCWGG	1 cut(s)	58
PstI	CTGCAG	1 cut(s)	547
PstNI	CAGNNNCTG	1 cut(s)	780
PsuI	RGATCY	2 cut(s)	118, 573
RsaI	GTAC	3 cut(s)	481, 506, 596
RsaNI	GTAC	3 cut(s)	480, 505, 595
SaqAI	TTAA	4 cut(s)	233, 486, 737, 771
SatI	GCNGC	1 cut(s)	651
Sau3AI	GATC	4 cut(s)	118, 573, 672, 754
ScaI	AGTACT	1 cut(s)	481
SchI	GAGTC	1 cut(s)	342
ScrFI	CCNGG	1 cut(s)	60
SfaNI	GCATC	2 cut(s)	115, 544
SfcI	CTRYAG	2 cut(s)	526, 543
SfuI	TTCGAA	1 cut(s)	622
Sse9I	AATT	5 cut(s)	241, 337, 510, 557, 733
SseBI	AGGCCT	2 cut(s)	34, 391
SsiI	CCGC	2 cut(s)	92, 305
SspMI	CTAG	1 cut(s)	266
StuI	AGGCCT	2 cut(s)	34, 391
StyD4I	CCNGG	1 cut(s)	58
TaaI	ACNGT	1 cut(s)	162
TaiI	ACGT	2 cut(s)	79, 664
TaqI	TCGA	2 cut(s)	622, 699
TasI	AATT	5 cut(s)	241, 337, 510, 557, 733
TatI	WGTACW	2 cut(s)	479, 504
TfiI	GAWTC	3 cut(s)	85, 362, 437
Tru1I	TTAA	4 cut(s)	233, 486, 737, 771
Tru9I	TTAA	4 cut(s)	233, 486, 737, 771
TscAI	CASTG	3 cut(s)	76, 167, 252
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	1 cut(s)	650
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	5 cut(s)	156, 267, 294, 570, 622
TspRI	CASTG	3 cut(s)	76, 167, 252
XagI	CCTNNNNNAGG	1 cut(s)	526
XapI	RAATTY	1 cut(s)	557
XceI	RCATGY	2 cut(s)	154, 689
XcmI	CCANNNNNNNNNTGG	1 cut(s)	677
XmiI	GTMKAC	1 cut(s)	400
XspI	CTAG	1 cut(s)	266
ZrmI	AGTACT	1 cut(s)	481
Zsp2I	ATGCAT	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.