Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003092

Physical Location & Seq

Genomic Coordinates Reverse (-)

13191765 .. 13201705

Gene Structure 9941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0099100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2370 bp

ATGGCCTTAGTAGATGTGGGGATGTTTGTTATGCAAGTCTCATTGGTAATAGTGGCAGCTTCAATAACCACCACCACCACCACCCAAGTAACAGCTGATCAAGCCAGCCTCTTACCGCCTCAAGCCAAGCGTAACTGCCCCGACCGCTGTGGTGACCTCACAATCCCATACCCATTTGGCATCGGTGACGGCTGTTACCGACAGTTGCCGGAACAAAATCATCAATTCAGCATCACTTGTGACCAGTCCACTAAACCCCCATCAGCGTACTGGACAAGTGCTAAACGCTGGACAAGTACTAAAGTCCGGGTTACAAACTTCAACATTTCACAGGGCGAGTTACAAATCATGAGTGACATAGCGAAAGATTGTTACGACGCCCAGGGTAATCGAACATTCAAAATCACCCCTTCGCTCCGAGTTAATCCTCCTTTCACCATCTCCAGTCACAAAAACAAGTTCTTTGCCGTTGGCTGTGACACTAACGCAATTTTTCGAGGTTTTCGAGGGGAAAAAGAGTTGGCAACCGGGTGTATGTCTGTGTGCACCACCCTTGCCGTTGTCGATTGGGAGTCTTGCACTGGCGTCGGCTGTTGCCAAACTCAAGTCCCGCATGGACTGAAAAACCGTACCGTGAGATTGAGTAGCTATAACGGCCACAAGGAGATATGGAGCTTTAACCCTTGCAGTTACGCTTTTATTGTGCAAGATGGCCTCTTCACATTTAATAATACGAGTTTTAAACTACTGAACAACATCCAGGAGCTTCCCATGGTTCTTAATTGGGACATGGGAAACGTGCCATGCGAGGTAGCTGGAAAGAGAAGTGTGGATTATGCATGCAAGGCTAATAGCAAGTGTGCCAATCGGGGAAATTACATCGGCGGCAATGGTTACTATTGCCAGTGCTTGCCTGGCTACGAAGGAAACCCATATCTCGGTTGCCAAGATATTGACGAGTGCTCGGGGGAAGCTAACCCCTGCGAGAATGGAACGTGCCTAAATTCACCTGCTGGCAATTACTCTTGTGAATGTCATAAAGGGTTCAGGAGTGATGGTCCATGGAAGTGCGTTCCCTCTCCCAAAGCTAACAACACTTCCCTGAAAATTTCATTGGGTATCAGCATAAGCTTCTTTGTATTGATGACTGGAATTTTTGGGATATATTGCCGATTCAAGAGACGACAATTCGAAAGACTTAAAGCAAAGTACTTCAATGCAAATGGCGGCCCAAAGTTGCTAGAAAAATTGTCCACTCAAAACGAATCTCTTGAGACAAAAGCCCAAATCTTTACTGCAGAAGCACTTAAGAAGGCAACAAACAATTACCATGAAAGTGAAAAGCTTGGTGAAGGAGGCTATGGAATAGTCTACAAAGGTATACTCAACAAAGGTAAACTCAAGGATGAAAGAGTGGTTGCAATAAAGAAGTCCAAAAATATTGCCCAGATCGAGAGTGACCAGTTTGTTAATGAGGTGGTTGTTCTCTCTCAAATAAATCATAAAAATGTGGTGAGGCTTATAGGTTGTTGTTTGGAGACACAAATGCCTTTGTTAGTCTATGAGTTTGTTGGCAACGGCACTCTTTATGAGCACATTCATAGAATAAATGGGAGACAACCACTTTCGTTGGAGTTTCGATTGAAGATAGCTGCAGAAACTGCAAGTGCACTCTCATACTTGCACCACTCGACATCGATCCCAATCATTCACCGAGATGTAAAAGCAACCAATATACTACTAGATGAGAAGTTCACCGCAAAAGTGTCGGACTTTGGAGCATCCCGTTTGGTTCCCGAAGATCCAAATCAACTTCTAACTTTCGTGCAAGGGACAATAGGGTACTTAGACCCTGAATATCTTCAATCAAACATACTCACAGATAAAAGTGACGTTTATAGCTTTGGAGTTGTCCTTGTAGTGCTACTCACAAGTAAAAAGGTGGTTTCATTTGATAGATCCGAGGACGAGAGAAACCTCGCCAATGTCTTTGTTTCCGCGGCCGAAAAGGGTATGTTGAATCCAATTCTTGATGATGAAATAGTGAAGGATGGAAATTTGGAGATCATTGAAAAAGTGGCCAATCTCGCCAAAAATTGTTTAAGCTTAAAAGGAGACGACAGGCCTTCCATGAAAGATGTAGAGAGGGAACTGGATGGAATATTATTGCAAACTTTGGCCATAGAACCAGGGGTAAAGTCTCATTCCTCTTCCAAAGAGATAGACCACTCTCTTGAGTCGTCTTCAAGCGCTTTCGTTGTCAAGGTTAGTGGTGAAGATGAAGGTGATAACACCACCAATATTACCAGTTACGACGTCAGCATGGAAAATCAAGCCCAAATGTTGAAGCCTTTTGATGATGGTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000213 GO:0000214 GO:0000278 GO:0000281 GO:0000379 GO:0000394 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008356 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0016892 GO:0016894 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0061640 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:0140101 GO:1901360 GO:1902494 GO:1902555 GO:1903047 GO:1905348

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_int_endo tRNA_int_endo_N

Protein Analysis

789

Amino Acids

87.18

Weight (kDa)

6.43

Isoelectric Point (pI)

35.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	46 - 116	1.7e-08	Wall-associated receptor kinase galacturonan-binding
Pkinase	PF00069	443 - 714	5.8e-46	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	446 - 718	3.8e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45577 AT3G45590 AT3G45590 AT5G60230 AT5G60230
fragaria_vesca	FvH4_2g14101 FvH4_2g14101 FvH4_2g14101 FvH4_2g14101 FvH4_2g14101 FvH4_2g14101 FvH4_2g14101
rosa_chinensis	RchiOBHm_Chr6g0276201
rosa_laevigata	RLG00000013409 RLG00000025847
rosa_multiflora	Rmu_sc0002063.1_g000007 Rmu_sc0004048.1_g000016 Rmu_sc0008839.1_g000006
rosa_roxburghii	Rroxscaffold_2G00125430 Rroxscaffold_7G00192490
rosa_rugosa	Rorug06G0098800 Rorug06G0098900 Rorug06G0098900 Rorug06G0099000 Rorug06G0099100 Rorug06G0099200 Rorug06G0099300 Rorug06G0124300
rosa_samantha	Rh1AG171200 Rh3BG017000 Rh3DG017300 Rh5BG538000 Rh5CG561900 Rh6AG210700 Rh6BG214900 Rh6DG207200
rosa_wichuraiana	Rw6G018360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1018
AatII	GACGTC	1 cut(s)	2319
Acc36I	ACCTGC	1 cut(s)	1018
AccI	GTMKAC	2 cut(s)	1371, 1381
AccII	CGCG	1 cut(s)	2000
AciI	CCGC	8 cut(s)	116, 145, 611, 885, 1227, 1758, 1998, 2000
AclWI	GGATC	3 cut(s)	1693, 1796, 1953
AcoI	YGGCCR	4 cut(s)	655, 2001, 2079, 2178
AcsI	RAATTY	4 cut(s)	1003, 1107, 1152, 2056
AcyI	GRCGYC	3 cut(s)	378, 585, 2316
AfaI	GTAC	5 cut(s)	269, 298, 631, 1211, 1844
AfeI	AGCGCT	1 cut(s)	2251
AfiI	CCNNNNNNNGG	1 cut(s)	938
AflII	CTTAAG	1 cut(s)	1307
AjnI	CCWGG	4 cut(s)	381, 759, 913, 2188
AjuI	GAANNNNNNNTTGG	2 cut(s)	1097, 1129
Alw21I	GWGCWC	4 cut(s)	548, 965, 1596, 1672
Alw26I	GTCTC	7 cut(s)	43, 1174, 1268, 1532, 1609, 2109, 2205
Alw44I	GTGCAC	2 cut(s)	544, 1668
AlwI	GGATC	3 cut(s)	1693, 1796, 1953
AlwNI	CAGNNNCTG	1 cut(s)	1661
Ama87I	CYCGRG	1 cut(s)	964
Aor51HI	AGCGCT	1 cut(s)	2251
AoxI	GGCC	8 cut(s)	3, 655, 712, 1228, 2001, 2079, 2123, 2178
ApaLI	GTGCAC	2 cut(s)	544, 1668
ApeKI	GCWGC	2 cut(s)	56, 1652
ApoI	RAATTY	4 cut(s)	1003, 1107, 1152, 2056
Asp700I	GAANNNNTTC	1 cut(s)	1860
AspLEI	GCGC	1 cut(s)	2252
AspS9I	GGNCC	2 cut(s)	1058, 1229
AsuC2I	CCSGG	2 cut(s)	308, 529
AsuII	TTCGAA	1 cut(s)	1191
AvaI	CYCGRG	1 cut(s)	964
AvaII	GGWCC	1 cut(s)	1058
BaeGI	GKGCMC	2 cut(s)	548, 1672
BalI	TGGCCA	2 cut(s)	2081, 2180
BbsI	GAAGAC	1 cut(s)	2235
Bbv12I	GWGCWC	4 cut(s)	548, 965, 1596, 1672
BbvI	GCAGC	2 cut(s)	68, 1639
BccI	CCATC	7 cut(s)	268, 446, 704, 1049, 2045, 2150, 2354
BceAI	ACGGC	5 cut(s)	205, 452, 542, 670, 1594
BcgI	CGANNNNNNTGC	4 cut(s)	568, 602, 1749, 1783
BciT130I	CCWGG	4 cut(s)	383, 761, 915, 2190
BclI	TGATCA	1 cut(s)	97
BcnI	CCSGG	2 cut(s)	308, 529
BcoDI	GTCTC	7 cut(s)	43, 1174, 1268, 1532, 1609, 2109, 2205
BfaI	CTAG	2 cut(s)	1241, 1742
BfmI	CTRYAG	2 cut(s)	1296, 1653
BfoI	RGCGCY	1 cut(s)	2253
BfrI	CTTAAG	1 cut(s)	1307
BfuAI	ACCTGC	1 cut(s)	1018
BisI	GCNGC	5 cut(s)	57, 886, 1228, 1653, 2001
BlsI	GCNGC	5 cut(s)	58, 887, 1229, 1654, 2002
BmcAI	AGTACT	2 cut(s)	298, 1211
Bme1390I	CCNGG	6 cut(s)	308, 383, 529, 761, 915, 2190
Bme18I	GGWCC	1 cut(s)	1058
BmeT110I	CYCGRG	1 cut(s)	964
BmgT120I	GGNCC	2 cut(s)	1058, 1229
BmiI	GGNNCC	1 cut(s)	1794
BmrFI	CCNGG	6 cut(s)	308, 383, 529, 761, 915, 2190
BmsI	GCATC	3 cut(s)	189, 240, 1790
BpiI	GAAGAC	1 cut(s)	2235
BpmI	CTGGAG	1 cut(s)	427
Bpu14I	TTCGAA	1 cut(s)	1191
BpuEI	CTTGAG	5 cut(s)	105, 588, 1292, 1385, 2255
BpuMI	CCSGG	2 cut(s)	308, 529
Bsa29I	ATCGAT	1 cut(s)	1697
BsaBI	GATNNNNATC	2 cut(s)	1703, 1806
BsaHI	GRCGYC	3 cut(s)	378, 585, 2316
BsaJI	CCNNGG	7 cut(s)	381, 382, 771, 1061, 1962, 1998, 2189
BsaXI	ACNNNNNCTCC	2 cut(s)	1042, 1072
Bsc4I	CCNNNNNNNGG	1 cut(s)	938
Bse1I	ACTGG	9 cut(s)	244, 275, 444, 586, 904, 1153, 1462, 2157, 2307
Bse3DI	GCAATG	1 cut(s)	895
Bse8I	GATNNNNATC	2 cut(s)	1703, 1806
BseBI	CCWGG	4 cut(s)	383, 761, 915, 2190
BseCI	ATCGAT	1 cut(s)	1697
BseDI	CCNNGG	7 cut(s)	381, 382, 771, 1061, 1962, 1998, 2189
BseGI	GGATG	6 cut(s)	27, 756, 1411, 1781, 2056, 2161
BseJI	GATNNNNATC	2 cut(s)	1703, 1806
BseLI	CCNNNNNNNGG	1 cut(s)	938
BseMI	GCAATG	1 cut(s)	895
BseNI	ACTGG	9 cut(s)	244, 275, 444, 586, 904, 1153, 1462, 2157, 2307
BseSI	GKGCMC	2 cut(s)	548, 1672
BseX3I	CGGCCG	1 cut(s)	2001
BseXI	GCAGC	2 cut(s)	68, 1639
Bsh1236I	CGCG	1 cut(s)	2000
Bsh1285I	CGRYCG	2 cut(s)	145, 2004
BshFI	GGCC	8 cut(s)	5, 657, 714, 1230, 2003, 2081, 2125, 2180
BshVI	ATCGAT	1 cut(s)	1697
BsiEI	CGRYCG	2 cut(s)	145, 2004
BsiHKAI	GWGCWC	4 cut(s)	548, 965, 1596, 1672
BsiHKCI	CYCGRG	1 cut(s)	964
BsiSI	CCGG	3 cut(s)	209, 307, 528
BslFI	GGGAC	3 cut(s)	593, 800, 1846
BslI	CCNNNNNNNGG	1 cut(s)	938
BsmAI	GTCTC	7 cut(s)	43, 1174, 1268, 1532, 1609, 2109, 2205
BsmBI	CGTCTC	2 cut(s)	1174, 2109
BsmFI	GGGAC	3 cut(s)	593, 800, 1846
BsnI	GGCC	8 cut(s)	5, 657, 714, 1230, 2003, 2081, 2125, 2180
BsoBI	CYCGRG	1 cut(s)	964
Bsp119I	TTCGAA	1 cut(s)	1191
Bsp1286I	GDGCHC	4 cut(s)	548, 965, 1596, 1672
Bsp143I	GATC	6 cut(s)	97, 1449, 1698, 1801, 1958, 2064
Bsp19I	CCATGG	2 cut(s)	771, 1061
BspACI	CCGC	8 cut(s)	116, 145, 611, 885, 1227, 1758, 1998, 2000
BspANI	GGCC	8 cut(s)	5, 657, 714, 1230, 2003, 2081, 2125, 2180
BspDI	ATCGAT	1 cut(s)	1697
BspFNI	CGCG	1 cut(s)	2000
BspHI	TCATGA	1 cut(s)	348
BspLI	GGNNCC	1 cut(s)	1794
BspMAI	CTGCAG	2 cut(s)	1300, 1657
BspMI	ACCTGC	1 cut(s)	1018
BspPI	GGATC	3 cut(s)	1693, 1796, 1953
BspT104I	TTCGAA	1 cut(s)	1191
BspTI	CTTAAG	1 cut(s)	1307
BsrDI	GCAATG	1 cut(s)	895
BsrI	ACTGG	9 cut(s)	244, 275, 444, 586, 904, 1153, 1462, 2157, 2307
BssECI	CCNNGG	7 cut(s)	381, 382, 771, 1061, 1962, 1998, 2189
BssMI	GATC	6 cut(s)	97, 1449, 1698, 1801, 1958, 2064
BssNAI	GTATAC	1 cut(s)	1382
BssNI	GRCGYC	3 cut(s)	378, 585, 2316
BssT1I	CCWWGG	2 cut(s)	771, 1061
Bst1107I	GTATAC	1 cut(s)	1382
Bst2UI	CCWGG	4 cut(s)	383, 761, 915, 2190
Bst4CI	ACNGT	3 cut(s)	204, 629, 634
Bst6I	CTCTTC	2 cut(s)	722, 2215
BstACI	GRCGYC	3 cut(s)	378, 585, 2316
BstAFI	CTTAAG	1 cut(s)	1307
BstAPI	GCANNNNNTGC	1 cut(s)	1661
BstBI	TTCGAA	1 cut(s)	1191
BstC8I	GCNNGC	4 cut(s)	106, 841, 911, 1015
BstDEI	CTNAG	2 cut(s)	7, 1846
BstDSI	CCRYGG	3 cut(s)	771, 1061, 1998
BstEII	GGTNACC	1 cut(s)	152
BstF5I	GGATG	6 cut(s)	27, 756, 1411, 1781, 2056, 2161
BstFNI	CGCG	1 cut(s)	2000
BstH2I	RGCGCY	1 cut(s)	2253
BstHHI	GCGC	1 cut(s)	2252
BstKTI	GATC	6 cut(s)	100, 1452, 1701, 1804, 1961, 2067
BstMAI	GTCTC	7 cut(s)	43, 1174, 1268, 1532, 1609, 2109, 2205
BstMBI	GATC	6 cut(s)	97, 1449, 1698, 1801, 1958, 2064
BstMCI	CGRYCG	2 cut(s)	145, 2004
BstMWI	GCNNNNNNNGC	7 cut(s)	101, 144, 654, 845, 915, 1661, 2087
BstNI	CCWGG	4 cut(s)	383, 761, 915, 2190
BstNSI	RCATGY	1 cut(s)	843
BstPI	GGTNACC	1 cut(s)	152
BstSCI	CCNGG	6 cut(s)	306, 381, 527, 759, 913, 2188
BstSFI	CTRYAG	2 cut(s)	1296, 1653
BstSLI	GKGCMC	2 cut(s)	548, 1672
BstUI	CGCG	1 cut(s)	2000
BstV1I	GCAGC	2 cut(s)	68, 1639
BstV2I	GAAGAC	1 cut(s)	2235
BstX2I	RGATCY	2 cut(s)	1801, 1958
BstYI	RGATCY	2 cut(s)	1801, 1958
BstZ17I	GTATAC	1 cut(s)	1382
BstZI	CGGCCG	1 cut(s)	2001
Bsu15I	ATCGAT	1 cut(s)	1697
BsuRI	GGCC	8 cut(s)	5, 657, 714, 1230, 2003, 2081, 2125, 2180
BsuTUI	ATCGAT	1 cut(s)	1697
BtgI	CCRYGG	3 cut(s)	771, 1061, 1998
BtsCI	GGATG	6 cut(s)	27, 756, 1411, 1781, 2056, 2161
BtsIMutI	CAGTG	2 cut(s)	579, 911
BveI	ACCTGC	1 cut(s)	1018
Cac8I	GCNNGC	4 cut(s)	106, 841, 911, 1015
CaiI	CAGNNNCTG	1 cut(s)	1661
CciI	TCATGA	1 cut(s)	348
CfoI	GCGC	1 cut(s)	2252
Cfr13I	GGNCC	2 cut(s)	1058, 1229
Cfr42I	CCGCGG	1 cut(s)	2001
ClaI	ATCGAT	1 cut(s)	1697
CseI	GACGC	2 cut(s)	386, 574
Csp6I	GTAC	5 cut(s)	268, 297, 630, 1210, 1843
CspCI	CAANNNNNGTGG	4 cut(s)	1611, 1646, 2251, 2286
CviQI	GTAC	5 cut(s)	268, 297, 630, 1210, 1843
DdeI	CTNAG	2 cut(s)	7, 1846
DpnI	GATC	6 cut(s)	99, 1451, 1700, 1803, 1960, 2066
DpnII	GATC	6 cut(s)	97, 1449, 1698, 1801, 1958, 2064
DraI	TTTAAA	1 cut(s)	742
EaeI	YGGCCR	4 cut(s)	655, 2001, 2079, 2178
EagI	CGGCCG	1 cut(s)	2001
Eam1104I	CTCTTC	2 cut(s)	722, 2215
EarI	CTCTTC	2 cut(s)	722, 2215
EclXI	CGGCCG	1 cut(s)	2001
Eco130I	CCWWGG	2 cut(s)	771, 1061
Eco147I	AGGCCT	1 cut(s)	2125
Eco47I	GGWCC	1 cut(s)	1058
Eco47III	AGCGCT	1 cut(s)	2251
Eco52I	CGGCCG	1 cut(s)	2001
Eco88I	CYCGRG	1 cut(s)	964
Eco91I	GGTNACC	1 cut(s)	152
EcoO65I	GGTNACC	1 cut(s)	152
EcoRII	CCWGG	4 cut(s)	381, 759, 913, 2188
EcoT14I	CCWWGG	2 cut(s)	771, 1061
EcoT22I	ATGCAT	1 cut(s)	841
ErhI	CCWWGG	2 cut(s)	771, 1061
Esp3I	CGTCTC	2 cut(s)	1174, 2109
FaqI	GGGAC	3 cut(s)	593, 800, 1846
FauI	CCCGC	1 cut(s)	618
FbaI	TGATCA	1 cut(s)	97
FblI	GTMKAC	2 cut(s)	1371, 1381
Fnu4HI	GCNGC	5 cut(s)	57, 886, 1228, 1653, 2001
FokI	GGATG	6 cut(s)	34, 743, 1418, 1768, 2063, 2168
Fsp4HI	GCNGC	5 cut(s)	57, 886, 1228, 1653, 2001
FspBI	CTAG	2 cut(s)	1241, 1742
GlaI	GCGC	1 cut(s)	2251
GluI	GCNGC	5 cut(s)	57, 886, 1228, 1653, 2001
GsuI	CTGGAG	1 cut(s)	427
HaeII	RGCGCY	1 cut(s)	2253
HaeIII	GGCC	8 cut(s)	5, 657, 714, 1230, 2003, 2081, 2125, 2180
HapII	CCGG	3 cut(s)	209, 307, 528
HgaI	GACGC	2 cut(s)	386, 574
HhaI	GCGC	1 cut(s)	2252
Hin1I	GRCGYC	3 cut(s)	378, 585, 2316
Hin6I	GCGC	1 cut(s)	2250
HinP1I	GCGC	1 cut(s)	2250
HindIII	AAGCTT	3 cut(s)	1129, 1343, 2104
HinfI	GANTC	5 cut(s)	572, 1173, 1265, 2020, 2237
HpaII	CCGG	3 cut(s)	209, 307, 528
Hpy166II	GTNNAC	8 cut(s)	249, 546, 1254, 1372, 1382, 1397, 1670, 1755
Hpy188I	TCNGA	3 cut(s)	419, 1771, 1963
Hpy188III	TCNNGA	8 cut(s)	349, 1048, 1177, 1271, 1453, 1796, 2030, 2234
Hpy8I	GTNNAC	8 cut(s)	249, 546, 1254, 1372, 1382, 1397, 1670, 1755
Hpy99I	CGWCG	3 cut(s)	380, 590, 2318
HpyAV	CCTTC	7 cut(s)	420, 917, 1306, 1346, 2041, 2136, 2276
HpyCH4III	ACNGT	3 cut(s)	204, 629, 634
HpyCH4IV	ACGT	4 cut(s)	798, 995, 1893, 2316
HpyF10VI	GCNNNNNNNGC	7 cut(s)	101, 144, 654, 845, 915, 1661, 2087
HpyF3I	CTNAG	2 cut(s)	7, 1846
HpySE526I	ACGT	4 cut(s)	798, 995, 1893, 2316
Hsp92I	GRCGYC	3 cut(s)	378, 585, 2316
HspAI	GCGC	1 cut(s)	2250
Ksp22I	TGATCA	1 cut(s)	97
KspI	CCGCGG	1 cut(s)	2001
Kzo9I	GATC	6 cut(s)	97, 1449, 1698, 1801, 1958, 2064
LmnI	GCTCC	4 cut(s)	420, 672, 763, 1778
Lsp1109I	GCAGC	2 cut(s)	68, 1639
LweI	GCATC	3 cut(s)	189, 240, 1790
MaeI	CTAG	2 cut(s)	1241, 1742
MaeII	ACGT	4 cut(s)	798, 995, 1893, 2316
MalI	GATC	6 cut(s)	99, 1451, 1700, 1803, 1960, 2066
MboI	GATC	6 cut(s)	97, 1449, 1698, 1801, 1958, 2064
MboII	GAAGA	7 cut(s)	709, 1657, 1811, 1853, 2202, 2235, 2288
MflI	RGATCY	2 cut(s)	1801, 1958
MhlI	GDGCHC	4 cut(s)	548, 965, 1596, 1672
MlsI	TGGCCA	2 cut(s)	2081, 2180
MluNI	TGGCCA	2 cut(s)	2081, 2180
MlyI	GAGTC	2 cut(s)	581, 2246
MmeI	TCCRAC	2 cut(s)	1611, 1749
Mox20I	TGGCCA	2 cut(s)	2081, 2180
Mph1103I	ATGCAT	1 cut(s)	841
MroXI	GAANNNNTTC	1 cut(s)	1860
MscI	TGGCCA	2 cut(s)	2081, 2180
MslI	CAYNNNNRTG	4 cut(s)	1066, 1335, 1506, 1716
Msp20I	TGGCCA	2 cut(s)	2081, 2180
MspA1I	CMGCKG	3 cut(s)	95, 147, 2000
MspCI	CTTAAG	1 cut(s)	1307
MspI	CCGG	3 cut(s)	209, 307, 528
MspR9I	CCNGG	6 cut(s)	308, 383, 529, 761, 915, 2190
MvaI	CCWGG	4 cut(s)	383, 761, 915, 2190
MvnI	CGCG	1 cut(s)	2000
MwoI	GCNNNNNNNGC	7 cut(s)	101, 144, 654, 845, 915, 1661, 2087
NciI	CCSGG	2 cut(s)	308, 529
NcoI	CCATGG	2 cut(s)	771, 1061
NdeII	GATC	6 cut(s)	97, 1449, 1698, 1801, 1958, 2064
NlaIV	GGNNCC	1 cut(s)	1794
NmuCI	GTSAC	8 cut(s)	152, 185, 239, 353, 446, 476, 1457, 1889
NsiI	ATGCAT	1 cut(s)	841
NspI	RCATGY	1 cut(s)	843
NspV	TTCGAA	1 cut(s)	1191
PaeI	GCATGC	1 cut(s)	843
PagI	TCATGA	1 cut(s)	348
PaqCI	CACCTGC	1 cut(s)	1018
PasI	CCCWGGG	1 cut(s)	382
PceI	AGGCCT	1 cut(s)	2125
PcsI	WCGNNNNNNNCGW	2 cut(s)	502, 804
PdmI	GAANNNNTTC	1 cut(s)	1860
PfeI	GAWTC	3 cut(s)	1173, 1265, 2020
PfoI	TCCNGGA	1 cut(s)	759
PkrI	GCNGC	5 cut(s)	58, 887, 1229, 1654, 2002
PleI	GAGTC	2 cut(s)	580, 2245
PpsI	GAGTC	2 cut(s)	580, 2245
Psp6I	CCWGG	4 cut(s)	381, 759, 913, 2188
PspEI	GGTNACC	1 cut(s)	152
PspGI	CCWGG	4 cut(s)	381, 759, 913, 2188
PspN4I	GGNNCC	1 cut(s)	1794
PspPI	GGNCC	2 cut(s)	1058, 1229
PstI	CTGCAG	2 cut(s)	1300, 1657
PstNI	CAGNNNCTG	1 cut(s)	1661
PsuI	RGATCY	2 cut(s)	1801, 1958
PvuII	CAGCTG	1 cut(s)	95
RsaI	GTAC	5 cut(s)	269, 298, 631, 1211, 1844
RsaNI	GTAC	5 cut(s)	268, 297, 630, 1210, 1843
RseI	CAYNNNNRTG	4 cut(s)	1066, 1335, 1506, 1716
SacII	CCGCGG	1 cut(s)	2001
SatI	GCNGC	5 cut(s)	57, 886, 1228, 1653, 2001
Sau3AI	GATC	6 cut(s)	97, 1449, 1698, 1801, 1958, 2064
Sau96I	GGNCC	2 cut(s)	1058, 1229
ScaI	AGTACT	2 cut(s)	298, 1211
SchI	GAGTC	2 cut(s)	581, 2246
ScrFI	CCNGG	6 cut(s)	308, 383, 529, 761, 915, 2190
SduI	GDGCHC	4 cut(s)	548, 965, 1596, 1672
SfaNI	GCATC	3 cut(s)	189, 240, 1790
SfcI	CTRYAG	2 cut(s)	1296, 1653
Sfr303I	CCGCGG	1 cut(s)	2001
SfuI	TTCGAA	1 cut(s)	1191
SgrBI	CCGCGG	1 cut(s)	2001
SinI	GGWCC	1 cut(s)	1058
SmiMI	CAYNNNNRTG	4 cut(s)	1066, 1335, 1506, 1716
SmlI	CTYRAG	6 cut(s)	120, 603, 1271, 1307, 1400, 2234
SmoI	CTYRAG	6 cut(s)	120, 603, 1271, 1307, 1400, 2234
SphI	GCATGC	1 cut(s)	843
SseBI	AGGCCT	1 cut(s)	2125
SsiI	CCGC	8 cut(s)	116, 145, 611, 885, 1227, 1758, 1998, 2000
SspI	AATATT	3 cut(s)	1441, 2163, 2302
SspMI	CTAG	2 cut(s)	1241, 1742
StuI	AGGCCT	1 cut(s)	2125
StyD4I	CCNGG	6 cut(s)	306, 381, 527, 759, 913, 2188
StyI	CCWWGG	2 cut(s)	771, 1061
TaaI	ACNGT	3 cut(s)	204, 629, 634
TaiI	ACGT	4 cut(s)	801, 998, 1896, 2319
TaqI	TCGA	9 cut(s)	391, 496, 505, 564, 1191, 1452, 1639, 1691, 1697
TatI	WGTACW	2 cut(s)	296, 1209
TauI	GCSGC	3 cut(s)	888, 1230, 2003
TfiI	GAWTC	3 cut(s)	1173, 1265, 2020
TscAI	CASTG	2 cut(s)	586, 911
TseFI	GTSAC	8 cut(s)	152, 185, 239, 353, 446, 476, 1457, 1889
TseI	GCWGC	2 cut(s)	56, 1652
Tsp45I	GTSAC	8 cut(s)	152, 185, 239, 353, 446, 476, 1457, 1889
TspDTI	ATGAA	8 cut(s)	1101, 1347, 1422, 1589, 1938, 2052, 2147, 2295
TspRI	CASTG	2 cut(s)	586, 911
Vha464I	CTTAAG	1 cut(s)	1307
VneI	GTGCAC	2 cut(s)	544, 1668
VpaK11BI	GGWCC	1 cut(s)	1058
XapI	RAATTY	4 cut(s)	1003, 1107, 1152, 2056
XceI	RCATGY	1 cut(s)	843
XcmI	CCANNNNNNNNNTGG	2 cut(s)	267, 911
XmiI	GTMKAC	2 cut(s)	1371, 1381
XmnI	GAANNNNTTC	1 cut(s)	1860
XspI	CTAG	2 cut(s)	1241, 1742
ZraI	GACGTC	1 cut(s)	2317
ZrmI	AGTACT	2 cut(s)	298, 1211
Zsp2I	ATGCAT	1 cut(s)	841

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.