Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008839.1

Orthogroup ID

OG0003092

Physical Location & Seq

Genomic Coordinates Reverse (-)

19928 .. 23152

Gene Structure 3225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008839.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

atggactggttagagattcattgtactactcgtctttgtggaggtgttgcaaagacattgttagttctttatattagcagaaatggtcagagtgtggaatccccatcaagtgtggagagatttactgttgaagagcgtactataacaagatggaagccagaacaatgccgtgttgacaatagattagttcaaagtgaaaagggaaccgaattggagcaactcggcgctgatatattctcctgctgtattcactctaccgcctcagaacctcttgacatagatgattctgaacagatgttgaatgacgatgagctctttttcaacactatggcagaggatggaagcgatgaggagatttactctcaatcttcacaggtagctgaaaaattaacgatcatgaatgaagaatgtttagatgaagaatataccaatgactatgatgaagaagaagaggaaaaccactatgcttctcgtgccatatccaagatgcaacccaggaggtctagtgtatccaaggcttactggaatgatgagatgggcatggctgtcgtatttccaaagggtagaatttggaggaccatgggaatctctcgtaatggcaagctctatatctccattgaggaagtttttaatggagatagggcttcaaatacaaatgcagtagaatctactggaaaagaaaaggagagatttgatctacaaaaagcacttttggctgctcttttcaatgcttctgagagacccaaggtgccggagctagaaagacctcaggagccggagctaccaaaaaagagaatagtaaagatcaagcaagggtcattgggagatcaaacatggactacaaagctatactttctttcatcatgcaaaacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000213 GO:0000214 GO:0000278 GO:0000281 GO:0000379 GO:0000394 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008356 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0016892 GO:0016894 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0061640 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:0140101 GO:1901360 GO:1902494 GO:1902555 GO:1903047 GO:1905348

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_int_endo tRNA_int_endo_N

Protein Analysis

291

Amino Acids

33.3

Weight (kDa)

4.78

Isoelectric Point (pI)

62.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45577 AT3G45590 AT3G45590 AT5G60230 AT5G60230
fragaria_vesca	FvH4_2g14101 FvH4_2g14101 FvH4_2g14101 FvH4_2g14101 FvH4_2g14101 FvH4_2g14101 FvH4_2g14101
rosa_chinensis	RchiOBHm_Chr6g0276201
rosa_laevigata	RLG00000013409 RLG00000025847
rosa_multiflora	Rmu_sc0002063.1_g000007 Rmu_sc0004048.1_g000016 Rmu_sc0008839.1_g000006
rosa_roxburghii	Rroxscaffold_2G00125430 Rroxscaffold_7G00192490
rosa_rugosa	Rorug06G0098800 Rorug06G0098900 Rorug06G0098900 Rorug06G0099000 Rorug06G0099100 Rorug06G0099200 Rorug06G0099300 Rorug06G0124300
rosa_samantha	Rh1AG171200 Rh3BG017000 Rh3DG017300 Rh5BG538000 Rh5CG561900 Rh6AG210700 Rh6BG214900 Rh6DG207200
rosa_wichuraiana	Rw6G018360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	748
AciI	CCGC	1 cut(s)	258
AcsI	RAATTY	1 cut(s)	567
AfaI	GTAC	2 cut(s)	25, 139
AgsI	TTSAA	6 cut(s)	131, 191, 301, 322, 648, 727
AjnI	CCWGG	1 cut(s)	494
AluBI	AGCT	6 cut(s)	313, 380, 604, 757, 781, 847
AluI	AGCT	6 cut(s)	313, 380, 604, 757, 781, 847
Alw21I	GWGCWC	1 cut(s)	315
Alw26I	GTCTC	1 cut(s)	733
ApeKI	GCWGC	1 cut(s)	716
ApoI	RAATTY	1 cut(s)	567
AspLEI	GCGC	1 cut(s)	227
AspS9I	GGNCC	1 cut(s)	576
AvaII	GGWCC	1 cut(s)	576
AxyI	CCTNAGG	1 cut(s)	768
BanI	GGYRCC	1 cut(s)	748
BanII	GRGCYC	1 cut(s)	315
BauI	CACGAG	1 cut(s)	471
Bbv12I	GWGCWC	1 cut(s)	315
BbvI	GCAGC	1 cut(s)	703
BccI	CCATC	4 cut(s)	112, 144, 332, 529
BceAI	ACGGC	1 cut(s)	153
BcgI	CGANNNNNNTGC	2 cut(s)	529, 563
BciT130I	CCWGG	1 cut(s)	496
BciVI	GTATCC	1 cut(s)	520
BcoDI	GTCTC	1 cut(s)	733
BfaI	CTAG	2 cut(s)	504, 758
BfoI	RGCGCY	1 cut(s)	228
BfuI	GTATCC	1 cut(s)	520
BisI	GCNGC	1 cut(s)	717
BlsI	GCNGC	1 cut(s)	718
Bme1390I	CCNGG	1 cut(s)	496
Bme18I	GGWCC	1 cut(s)	576
BmgT120I	GGNCC	1 cut(s)	576
BmiI	GGNNCC	3 cut(s)	205, 750, 774
BmrFI	CCNGG	1 cut(s)	496
BmsI	GCATC	1 cut(s)	477
BplI	GAGNNNNNCTC	2 cut(s)	344, 376
BsaI	GGTCTC	1 cut(s)	733
BsaJI	CCNNGG	4 cut(s)	494, 513, 579, 744
BsaXI	ACNNNNNCTCC	2 cut(s)	490, 520
Bse1I	ACTGG	3 cut(s)	11, 527, 676
Bse21I	CCTNAGG	1 cut(s)	768
BseBI	CCWGG	1 cut(s)	496
BseDI	CCNNGG	4 cut(s)	494, 513, 579, 744
BseGI	GGATG	1 cut(s)	343
BseMII	CTCAG	3 cut(s)	276, 726, 782
BseNI	ACTGG	3 cut(s)	11, 527, 676
BseRI	GAGGAG	1 cut(s)	365
BseXI	GCAGC	1 cut(s)	703
BshNI	GGYRCC	1 cut(s)	748
BsiHKAI	GWGCWC	1 cut(s)	315
BsiSI	CCGG	2 cut(s)	752, 776
BsmAI	GTCTC	1 cut(s)	733
Bso31I	GGTCTC	1 cut(s)	733
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp143I	GATC	4 cut(s)	393, 694, 804, 826
Bsp19I	CCATGG	1 cut(s)	579
BspACI	CCGC	1 cut(s)	258
BspCNI	CTCAG	3 cut(s)	275, 727, 781
BspHI	TCATGA	1 cut(s)	396
BspLI	GGNNCC	3 cut(s)	205, 750, 774
BspQI	GCTCTTC	1 cut(s)	126
BspT107I	GGYRCC	1 cut(s)	748
BspTNI	GGTCTC	1 cut(s)	733
BsrI	ACTGG	3 cut(s)	11, 527, 676
BssECI	CCNNGG	4 cut(s)	494, 513, 579, 744
BssMI	GATC	4 cut(s)	393, 694, 804, 826
BssSI	CACGAG	1 cut(s)	471
BssT1I	CCWWGG	3 cut(s)	513, 579, 744
Bst2BI	CACGAG	1 cut(s)	471
Bst2UI	CCWGG	1 cut(s)	496
Bst4CI	ACNGT	1 cut(s)	127
Bst6I	CTCTTC	2 cut(s)	126, 444
BstC8I	GCNNGC	1 cut(s)	602
BstDEI	CTNAG	4 cut(s)	262, 735, 768, 873
BstDSI	CCRYGG	1 cut(s)	579
BstF5I	GGATG	1 cut(s)	343
BstH2I	RGCGCY	1 cut(s)	228
BstHHI	GCGC	1 cut(s)	227
BstKTI	GATC	4 cut(s)	396, 697, 807, 829
BstMAI	GTCTC	1 cut(s)	733
BstMBI	GATC	4 cut(s)	393, 694, 804, 826
BstMWI	GCNNNNNNNGC	2 cut(s)	473, 713
BstNI	CCWGG	1 cut(s)	496
BstSCI	CCNGG	1 cut(s)	494
BstV1I	GCAGC	1 cut(s)	703
Bsu36I	CCTNAGG	1 cut(s)	768
BsuI	GTATCC	1 cut(s)	520
BtgI	CCRYGG	1 cut(s)	579
BtgZI	GCGATG	1 cut(s)	360
BtsCI	GGATG	1 cut(s)	343
Cac8I	GCNNGC	1 cut(s)	602
CciI	TCATGA	1 cut(s)	396
CfoI	GCGC	1 cut(s)	227
Cfr13I	GGNCC	1 cut(s)	576
Csp6I	GTAC	2 cut(s)	24, 138
CviAII	CATG	5 cut(s)	397, 541, 580, 834, 864
CviQI	GTAC	2 cut(s)	24, 138
DdeI	CTNAG	4 cut(s)	262, 735, 768, 873
DpnI	GATC	4 cut(s)	395, 696, 806, 828
DpnII	GATC	4 cut(s)	393, 694, 804, 826
Eam1104I	CTCTTC	2 cut(s)	126, 444
EarI	CTCTTC	2 cut(s)	126, 444
Ecl136II	GAGCTC	1 cut(s)	313
Eco130I	CCWWGG	3 cut(s)	513, 579, 744
Eco24I	GRGCYC	1 cut(s)	315
Eco31I	GGTCTC	1 cut(s)	733
Eco47I	GGWCC	1 cut(s)	576
Eco53kI	GAGCTC	1 cut(s)	313
Eco81I	CCTNAGG	1 cut(s)	768
EcoICRI	GAGCTC	1 cut(s)	313
EcoRII	CCWGG	1 cut(s)	494
EcoT14I	CCWWGG	3 cut(s)	513, 579, 744
EcoT38I	GRGCYC	1 cut(s)	315
ErhI	CCWWGG	3 cut(s)	513, 579, 744
FaeI	CATG	5 cut(s)	400, 544, 583, 837, 867
FalI	AAGNNNNNCTT	2 cut(s)	836, 868
FatI	CATG	5 cut(s)	396, 540, 579, 833, 863
Fnu4HI	GCNGC	1 cut(s)	717
FokI	GGATG	1 cut(s)	350
FriOI	GRGCYC	1 cut(s)	315
Fsp4HI	GCNGC	1 cut(s)	717
FspBI	CTAG	2 cut(s)	504, 758
GlaI	GCGC	1 cut(s)	226
GluI	GCNGC	1 cut(s)	717
HaeII	RGCGCY	1 cut(s)	228
HapII	CCGG	2 cut(s)	752, 776
HhaI	GCGC	1 cut(s)	227
Hin1II	CATG	5 cut(s)	400, 544, 583, 837, 867
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	5 cut(s)	16, 98, 284, 585, 665
HpaII	CCGG	2 cut(s)	752, 776
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	4 cut(s)	90, 265, 289, 736
Hpy188III	TCNNGA	3 cut(s)	272, 397, 770
Hpy8I	GTNNAC	1 cut(s)	175
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4V	TGCA	4 cut(s)	50, 490, 659, 867
HpyF10VI	GCNNNNNNNGC	2 cut(s)	473, 713
HpyF3I	CTNAG	4 cut(s)	262, 735, 768, 873
Hsp92II	CATG	5 cut(s)	400, 544, 583, 837, 867
HspAI	GCGC	1 cut(s)	225
Kzo9I	GATC	4 cut(s)	393, 694, 804, 826
LguI	GCTCTTC	1 cut(s)	126
LmnI	GCTCC	4 cut(s)	214, 754, 772, 778
Lsp1109I	GCAGC	1 cut(s)	703
LweI	GCATC	1 cut(s)	477
MaeI	CTAG	2 cut(s)	504, 758
MalI	GATC	4 cut(s)	395, 696, 806, 828
MboI	GATC	4 cut(s)	393, 694, 804, 826
MboII	GAAGA	7 cut(s)	143, 360, 416, 431, 455, 458, 461
MhlI	GDGCHC	1 cut(s)	315
MluCI	AATT	3 cut(s)	209, 386, 567
MseI	TTAA	2 cut(s)	389, 630
MspI	CCGG	2 cut(s)	752, 776
MspR9I	CCNGG	1 cut(s)	496
MvaI	CCWGG	1 cut(s)	496
MwoI	GCNNNNNNNGC	2 cut(s)	473, 713
NcoI	CCATGG	1 cut(s)	579
NdeII	GATC	4 cut(s)	393, 694, 804, 826
NlaIII	CATG	5 cut(s)	400, 544, 583, 837, 867
NlaIV	GGNNCC	3 cut(s)	205, 750, 774
NmeAIII	GCCGAG	1 cut(s)	201
PagI	TCATGA	1 cut(s)	396
PciSI	GCTCTTC	1 cut(s)	126
PfeI	GAWTC	5 cut(s)	16, 98, 284, 585, 665
PkrI	GCNGC	1 cut(s)	718
Psp124BI	GAGCTC	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	494
PspGI	CCWGG	1 cut(s)	494
PspN4I	GGNNCC	3 cut(s)	205, 750, 774
PspPI	GGNCC	1 cut(s)	576
RsaI	GTAC	2 cut(s)	25, 139
RsaNI	GTAC	2 cut(s)	24, 138
SacI	GAGCTC	1 cut(s)	315
SapI	GCTCTTC	1 cut(s)	126
SaqAI	TTAA	2 cut(s)	389, 630
SatI	GCNGC	1 cut(s)	717
Sau3AI	GATC	4 cut(s)	393, 694, 804, 826
Sau96I	GGNCC	1 cut(s)	576
ScrFI	CCNGG	1 cut(s)	496
SduI	GDGCHC	1 cut(s)	315
SfaNI	GCATC	1 cut(s)	477
SinI	GGWCC	1 cut(s)	576
Sse9I	AATT	3 cut(s)	209, 386, 567
SsiI	CCGC	1 cut(s)	258
SspMI	CTAG	2 cut(s)	504, 758
SstI	GAGCTC	1 cut(s)	315
StyD4I	CCNGG	1 cut(s)	494
StyI	CCWWGG	3 cut(s)	513, 579, 744
TaaI	ACNGT	1 cut(s)	127
TasI	AATT	3 cut(s)	209, 386, 567
TatI	WGTACW	1 cut(s)	23
TfiI	GAWTC	5 cut(s)	16, 98, 284, 585, 665
Tru1I	TTAA	2 cut(s)	389, 630
Tru9I	TTAA	2 cut(s)	389, 630
TseI	GCWGC	1 cut(s)	716
TspDTI	ATGAA	6 cut(s)	8, 413, 417, 432, 456, 849
VpaK11BI	GGWCC	1 cut(s)	576
XapI	RAATTY	1 cut(s)	567
XspI	CTAG	2 cut(s)	504, 758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.