Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003092

Physical Location & Seq

Genomic Coordinates Reverse (-)

13188990 .. 13191561

Gene Structure 2572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0099000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2400 bp

ATGTCGAACCAAGATGAGGGAACGAAGAAGGACTTCAGCACCGCCATTCTCAACCGCAAGAAGGCTCCAAATCGCCTCATTGTCGATGAAGCTGTAGTGGATGACAACTCCATCATCCAACTCCACCCAGCGACCATGGAGAAGCTCCAGCTCTTTCGTGGTGACACAGTCTTGATCAAAGGAAAGAAGAGAAGAGACACAATCTGTATTGCTCTTGCTGATGATACATGTGAGGAACCAAAGGTAAGCATGAACAAGGTTGTGAGGAACAACCTTAGGGTTAGGCTTGGTGATGTTGTTTCCATTCACCAGTGCGCTGATGTCAAGTATGGAAAGCGTGTCCACATTCTCCCTATAGATGACACAATTGAAGGGATCACTGGAAATCTGTTTGATGCCTACTTGAAGCCTTATTTCCAAGAGACCTACCGCCCGGTTAGGAAAGGTGATCTTTTCCTGGTGAGAGGAGGAATGAGGAGTGTAGAGTTTAAGGTTATTGAGACTGACCCTCCTGAGTACTGTGTGGTTGCTCCAGACACCGAAATCTTCTGTGAGGGAGAACCTGTTAGAAGGGAGGATGAGGAAAGATTAGATGAGGTAGGGTATGATGATGTTGGTGGTGTTAGGAAACAGATGGCTCAGATTCGCGAATTGGTTGAGCTGCCTCTGAGGCATCCTCAGCTGTTTAAATCAATCGGTGTCAAACCACCAAAGGGTATTCTTCTCTATGGTCCTCCTGGAACCGGCAAGACTTTAATTGCAAGAGCTGTTGCTAATGAAACCGGGGCATTCTTTTTCTGCATCAATGGACCAGAAATCATGTCCAAGATGGCTGGAGAGAGTGAGAGCAACCTCAGGAAAGCTTTTGAGGAAGCAGAGAAGAATGCGCCATCAATCATATTTATTGATGAGATTGATTCCATTGCTCCCAAGAGAGAGAAGACTCATGGAGAAGTTGAGAGGAGGATTGTTTCCCAGCTCTTGACTCTTATGGATGGACTAAAGTCCCGAGCACATGTCATTGTTATGGGGGCTACTAATCGTCCAAACAGTATTGACCCGGCTCTTAGGAGGTTTGGAAGATTTGATAGGGAAATCGATATTGGTGTTCCAGATGAAGTTGGGCGTCTTGAGGTCCTCCGCATTCATAGCAAGAACATGAAGCTTGCCGAAGATGTCGATTTAGAAAGGGTTGCCAAGGATACTCATGGGTATGTTGGTGCTGATCTAGCTGCTTTATCTACTGAGGCTGCACTTCAATGCATCCGAGAAAAGATGGATGTGATTGACTTGGAAGATGAGACAATAGATGCTGAGATACTCAACTCAATGGCAGTAACAAACGAACATTTCCAGACTGCTCTTGGAACAAGCAACCCTTCTGCTCTTCGTGAAACGGTTGTTGAAGTTCCCAATGTTACTTGGGATGCTATTGGAGGTCTTGAAAATGTTAAGAGAGAACTTCAAGAGACTGTTCAATATCCTGTTGAGCATCCGGAGAAATTTGAGAAATTCGGTATGTCACCCTCAAAGGGAGTTCTTTTCTATGGGCCTCCTGGATGCGGTAAAACTCTTCTGGCCAAGGCTATAGCTAATGAGTGTCAGGCTAACTTCATCAGTATCAAGGGACCTGAGTTGCTCACCATGTGGTTTGGAGAGAGTGAGGCCAATGTAAGAGAAATTTTCGACAAGGCTCGTGCATCTGCTCCATGTGTCCTCTTTTTTGATGAGCTCGATTCCATTGCTACTAAAAGAGGTAGTAATGTAGGTGATTCTGGAGGTGCTGATAGGGTTTTGAACCAACTCCTTACTGAAATGGATGGAGTGTCTGCCAAGAAAACAGTTTTCATTATTGGGGCCACCAACAGACCTGACATTATAGACCCTGCACTTCTTCGTCCAGGACGTCTGGATCAATTGCTTTACATTCCTCTCCCTGATGAAGAATCCCGCTATCAAATATTCAAGTCTTGCTTGAGGAAGTCTCCTGTTTCCAAGTATGTGGACCTCAAAGCTCTTGCCAAGCACACAGTAGGTTTCAGTGGTGCTGATATCACTGAAATATGCCAGCGTGCTTGCAAATATGCCATCAGAGACAACATTGAGAAAGATATTGAGAGGGAGAGGAGGAGAAGTGAGAATCCTGATGTTTTGGAGGAGGATGAAGATGAAGTATCAGAGATCACCGCAGCTCACTTTGAGGAATCAATGAAGTATGCTCGTAGGAGCGTTAGTGATGCTGATATCCGCAAGTACCAGGCATTTGCAACTACATTGCACCAGGCGAGAGGGTTTGGAGCAGATGAGTTCAGGTTCCCCAGTGGCTCGGGCGCTGCTGTTGGATCTGATCCTTTTGCAACTACTAATGCTGGTGAAGCTGATGAAGACCTTTATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000213 GO:0000214 GO:0000278 GO:0000281 GO:0000379 GO:0000394 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008356 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0016892 GO:0016894 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0061640 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:0140101 GO:1901360 GO:1902494 GO:1902555 GO:1903047 GO:1905348

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_int_endo tRNA_int_endo_N

Protein Analysis

799

Amino Acids

88.95

Weight (kDa)

5.15

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDC48_N	PF02359	25 - 106	3.9e-21	Cell division protein 48 (CDC48), N-terminal domain
CDC48_2	PF02933	126 - 190	1.3e-11	Cell division protein 48 (CDC48), domain 2
RuvB_N	PF05496	239 - 314	6.3e-06	Holliday junction DNA helicase RuvB P-loop domain
AAA	PF00004	240 - 369	1.5e-48	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	392 - 433	4.1e-14	AAA+ lid domain
AAA	PF00004	513 - 645	5.7e-47	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	668 - 706	4.3e-12	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0003092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45577 AT3G45590 AT3G45590 AT5G60230 AT5G60230
fragaria_vesca	FvH4_2g14101 FvH4_2g14101 FvH4_2g14101 FvH4_2g14101 FvH4_2g14101 FvH4_2g14101 FvH4_2g14101
rosa_chinensis	RchiOBHm_Chr6g0276201
rosa_laevigata	RLG00000013409 RLG00000025847
rosa_multiflora	Rmu_sc0002063.1_g000007 Rmu_sc0004048.1_g000016 Rmu_sc0008839.1_g000006
rosa_roxburghii	Rroxscaffold_2G00125430 Rroxscaffold_7G00192490
rosa_rugosa	Rorug06G0098800 Rorug06G0098900 Rorug06G0098900 Rorug06G0099000 Rorug06G0099100 Rorug06G0099200 Rorug06G0099300 Rorug06G0124300
rosa_samantha	Rh1AG171200 Rh3BG017000 Rh3DG017300 Rh5BG538000 Rh5CG561900 Rh6AG210700 Rh6BG214900 Rh6DG207200
rosa_wichuraiana	Rw6G018360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1909
AccII	CGCG	1 cut(s)	648
AccIII	TCCGGA	1 cut(s)	1495
AciI	CCGC	8 cut(s)	42, 55, 430, 1141, 1563, 1951, 2187, 2248
AclWI	GGATC	4 cut(s)	383, 1920, 2342, 2350
AcoI	YGGCCR	1 cut(s)	1578
AcsI	RAATTY	3 cut(s)	1502, 1511, 1680
AcuI	CTGAAG	1 cut(s)	19
AcyI	GRCGYC	2 cut(s)	1126, 1906
AdeI	CACNNNGTG	1 cut(s)	1647
AfaI	GTAC	2 cut(s)	518, 2255
AfiI	CCNNNNNNNGG	6 cut(s)	16, 61, 713, 743, 1532, 1562
AflIII	ACRYGT	2 cut(s)	227, 1015
AgsI	TTSAA	9 cut(s)	371, 406, 1259, 1406, 1445, 1466, 1478, 1798, 1966
AjnI	CCWGG	6 cut(s)	456, 736, 1555, 1900, 2256, 2280
AjuI	GAANNNNNNNTTGG	2 cut(s)	1086, 1118
Alw21I	GWGCWC	2 cut(s)	1015, 1734
Alw26I	GTCTC	7 cut(s)	189, 416, 494, 1295, 1463, 1989, 2088
AlwI	GGATC	4 cut(s)	383, 1920, 2342, 2350
Ama87I	CYCGRG	2 cut(s)	1008, 2326
Aor13HI	TCCGGA	1 cut(s)	1495
AoxI	GGCC	4 cut(s)	1550, 1578, 1665, 1857
ApeKI	GCWGC	5 cut(s)	661, 1232, 1250, 2189, 2333
ApoI	RAATTY	3 cut(s)	1502, 1511, 1680
Asp700I	GAANNNNTTC	1 cut(s)	32
AspLEI	GCGC	3 cut(s)	317, 889, 2333
AspS9I	GGNCC	7 cut(s)	731, 809, 1135, 1550, 1628, 1857, 2005
AsuC2I	CCSGG	3 cut(s)	434, 784, 1061
AvaI	CYCGRG	2 cut(s)	1008, 2326
AvaII	GGWCC	5 cut(s)	731, 809, 1135, 1628, 2005
AxyI	CCTNAGG	2 cut(s)	275, 854
BalI	TGGCCA	1 cut(s)	1580
BanII	GRGCYC	1 cut(s)	1734
BauI	CACGAG	1 cut(s)	1695
BbsI	GAAGAC	2 cut(s)	947, 2391
Bbv12I	GWGCWC	2 cut(s)	1015, 1734
BbvCI	CCTCAGC	1 cut(s)	678
BbvI	GCAGC	5 cut(s)	648, 1219, 1237, 2201, 2320
BccI	CCATC	8 cut(s)	119, 628, 823, 898, 989, 1270, 1814, 2096
BcgI	CGANNNNNNTGC	2 cut(s)	1724, 1758
BciT130I	CCWGG	6 cut(s)	458, 738, 1557, 1902, 2258, 2282
BciVI	GTATCC	1 cut(s)	1195
BclI	TGATCA	1 cut(s)	174
BcnI	CCSGG	3 cut(s)	434, 784, 1061
BcoDI	GTCTC	7 cut(s)	189, 416, 494, 1295, 1463, 1989, 2088
BfaI	CTAG	1 cut(s)	1229
BfmI	CTRYAG	3 cut(s)	93, 354, 1587
BfoI	RGCGCY	1 cut(s)	2334
BfuI	GTATCC	1 cut(s)	1195
BglI	GCCNNNNNGGC	1 cut(s)	670
BisI	GCNGC	5 cut(s)	662, 1233, 1251, 2190, 2334
BlsI	GCNGC	5 cut(s)	663, 1234, 1252, 2191, 2335
BmcAI	AGTACT	1 cut(s)	518
Bme1390I	CCNGG	9 cut(s)	434, 458, 738, 784, 1061, 1557, 1902, 2258, 2282
Bme18I	GGWCC	5 cut(s)	731, 809, 1135, 1628, 2005
BmeT110I	CYCGRG	2 cut(s)	1008, 2326
BmgT120I	GGNCC	7 cut(s)	731, 809, 1135, 1550, 1628, 1857, 2005
BmiI	GGNNCC	6 cut(s)	66, 237, 742, 1629, 1858, 2315
BmrFI	CCNGG	9 cut(s)	434, 458, 738, 784, 1061, 1557, 1902, 2258, 2282
BmrI	ACTGGG	1 cut(s)	2313
BmuI	ACTGGG	1 cut(s)	2313
BoxI	GACNNNNGTC	1 cut(s)	1003
BpiI	GAAGAC	2 cut(s)	947, 2391
BplI	GAGNNNNNCTC	4 cut(s)	661, 693, 1969, 2001
BpmI	CTGGAG	4 cut(s)	131, 516, 855, 1797
Bpu10I	CCTNAGC	1 cut(s)	678
BpuEI	CTTGAG	2 cut(s)	1151, 1996
BpuMI	CCSGG	3 cut(s)	434, 784, 1061
Bsa29I	ATCGAT	1 cut(s)	1098
BsaHI	GRCGYC	2 cut(s)	1126, 1906
BsaI	GGTCTC	1 cut(s)	416
BsaJI	CCNNGG	4 cut(s)	135, 783, 1197, 1581
BsaWI	WCCGGW	1 cut(s)	1495
BsaXI	ACNNNNNCTCC	8 cut(s)	493, 523, 549, 579, 2119, 2149, 2218, 2248
Bsc4I	CCNNNNNNNGG	6 cut(s)	16, 61, 713, 743, 1532, 1562
Bse118I	RCCGGY	1 cut(s)	743
Bse1I	ACTGG	3 cut(s)	310, 385, 2319
Bse21I	CCTNAGG	2 cut(s)	275, 854
Bse3DI	GCAATG	3 cut(s)	921, 1740, 2273
BseAI	TCCGGA	1 cut(s)	1495
BseBI	CCWGG	6 cut(s)	458, 738, 1557, 1902, 2258, 2282
BseCI	ATCGAT	1 cut(s)	1098
BseDI	CCNNGG	4 cut(s)	135, 783, 1197, 1581
BseLI	CCNNNNNNNGG	6 cut(s)	16, 61, 713, 743, 1532, 1562
BseMI	GCAATG	3 cut(s)	921, 1740, 2273
BseMII	CTCAG	8 cut(s)	504, 653, 659, 692, 868, 1236, 1305, 1623
BseNI	ACTGG	3 cut(s)	310, 385, 2319
BseRI	GAGGAG	6 cut(s)	480, 490, 976, 2140, 2143, 2171
BseXI	GCAGC	5 cut(s)	648, 1219, 1237, 2201, 2320
BseYI	CCCAGC	2 cut(s)	127, 975
BsgI	GTGCAG	2 cut(s)	1236, 1872
Bsh1236I	CGCG	1 cut(s)	648
BshFI	GGCC	4 cut(s)	1552, 1580, 1667, 1859
BshVI	ATCGAT	1 cut(s)	1098
BsiHKAI	GWGCWC	2 cut(s)	1015, 1734
BsiHKCI	CYCGRG	2 cut(s)	1008, 2326
BsiSI	CCGG	5 cut(s)	434, 744, 783, 1061, 1496
BslFI	GGGAC	2 cut(s)	991, 1641
BslI	CCNNNNNNNGG	6 cut(s)	16, 61, 713, 743, 1532, 1562
BsmAI	GTCTC	7 cut(s)	189, 416, 494, 1295, 1463, 1989, 2088
BsmFI	GGGAC	2 cut(s)	991, 1641
BsmI	GAATGC	3 cut(s)	788, 889, 1143
BsnI	GGCC	4 cut(s)	1552, 1580, 1667, 1859
Bso31I	GGTCTC	1 cut(s)	416
BsoBI	CYCGRG	2 cut(s)	1008, 2326
Bsp1286I	GDGCHC	2 cut(s)	1015, 1734
Bsp13I	TCCGGA	1 cut(s)	1495
Bsp143I	GATC	8 cut(s)	174, 375, 448, 1225, 1912, 2181, 2342, 2347
Bsp19I	CCATGG	1 cut(s)	135
Bsp68I	TCGCGA	1 cut(s)	648
BspACI	CCGC	8 cut(s)	42, 55, 430, 1141, 1563, 1951, 2187, 2248
BspANI	GGCC	4 cut(s)	1552, 1580, 1667, 1859
BspCNI	CTCAG	8 cut(s)	505, 652, 660, 691, 867, 1237, 1306, 1624
BspDI	ATCGAT	1 cut(s)	1098
BspEI	TCCGGA	1 cut(s)	1495
BspFNI	CGCG	1 cut(s)	648
BspLI	GGNNCC	6 cut(s)	66, 237, 742, 1629, 1858, 2315
BspPI	GGATC	4 cut(s)	383, 1920, 2342, 2350
BspQI	GCTCTTC	1 cut(s)	1392
BspTNI	GGTCTC	1 cut(s)	416
BsrDI	GCAATG	3 cut(s)	921, 1740, 2273
BsrFI	RCCGGY	1 cut(s)	743
BsrI	ACTGG	3 cut(s)	310, 385, 2319
BssAI	RCCGGY	1 cut(s)	743
BssECI	CCNNGG	4 cut(s)	135, 783, 1197, 1581
BssMI	GATC	8 cut(s)	174, 375, 448, 1225, 1912, 2181, 2342, 2347
BssNI	GRCGYC	2 cut(s)	1126, 1906
BssSI	CACGAG	1 cut(s)	1695
BssT1I	CCWWGG	3 cut(s)	135, 1197, 1581
Bst2BI	CACGAG	1 cut(s)	1695
Bst2UI	CCWGG	6 cut(s)	458, 738, 1557, 1902, 2258, 2282
Bst4CI	ACNGT	7 cut(s)	169, 521, 1052, 1399, 1474, 1843, 2032
Bst6I	CTCTTC	4 cut(s)	182, 187, 1392, 1578
BstACI	GRCGYC	2 cut(s)	1126, 1906
BstC8I	GCNNGC	4 cut(s)	1167, 2069, 2073, 2077
BstDSI	CCRYGG	1 cut(s)	135
BstFNI	CGCG	1 cut(s)	648
BstH2I	RGCGCY	1 cut(s)	2334
BstHHI	GCGC	3 cut(s)	317, 889, 2333
BstKTI	GATC	8 cut(s)	177, 378, 451, 1228, 1915, 2184, 2345, 2350
BstMAI	GTCTC	7 cut(s)	189, 416, 494, 1295, 1463, 1989, 2088
BstMBI	GATC	8 cut(s)	174, 375, 448, 1225, 1912, 2181, 2342, 2347
BstMWI	GCNNNNNNNGC	5 cut(s)	670, 679, 1149, 1229, 2375
BstNI	CCWGG	6 cut(s)	458, 738, 1557, 1902, 2258, 2282
BstNSI	RCATGY	2 cut(s)	231, 1019
BstPAI	GACNNNNGTC	1 cut(s)	1003
BstSCI	CCNGG	9 cut(s)	432, 456, 736, 782, 1059, 1555, 1900, 2256, 2280
BstSFI	CTRYAG	3 cut(s)	93, 354, 1587
BstUI	CGCG	1 cut(s)	648
BstV1I	GCAGC	5 cut(s)	648, 1219, 1237, 2201, 2320
BstV2I	GAAGAC	2 cut(s)	947, 2391
BstX2I	RGATCY	1 cut(s)	2342
BstXI	CCANNNNNNTGG	1 cut(s)	2002
BstYI	RGATCY	1 cut(s)	2342
Bsu15I	ATCGAT	1 cut(s)	1098
Bsu36I	CCTNAGG	2 cut(s)	275, 854
BsuI	GTATCC	1 cut(s)	1195
BsuRI	GGCC	4 cut(s)	1552, 1580, 1667, 1859
BsuTUI	ATCGAT	1 cut(s)	1098
BtgI	CCRYGG	1 cut(s)	135
BtsIMutI	CAGTG	5 cut(s)	317, 378, 2047, 2055, 2326
BtuMI	TCGCGA	1 cut(s)	648
Cac8I	GCNNGC	4 cut(s)	1167, 2069, 2073, 2077
CfoI	GCGC	3 cut(s)	317, 889, 2333
Cfr10I	RCCGGY	1 cut(s)	743
Cfr13I	GGNCC	7 cut(s)	731, 809, 1135, 1550, 1628, 1857, 2005
ClaI	ATCGAT	1 cut(s)	1098
CseI	GACGC	1 cut(s)	1115
Csp6I	GTAC	2 cut(s)	517, 2254
CviQI	GTAC	2 cut(s)	517, 2254
DpnI	GATC	8 cut(s)	176, 377, 450, 1227, 1914, 2183, 2344, 2349
DpnII	GATC	8 cut(s)	174, 375, 448, 1225, 1912, 2181, 2342, 2347
DraI	TTTAAA	1 cut(s)	688
DraIII	CACNNNGTG	1 cut(s)	1647
EaeI	YGGCCR	1 cut(s)	1578
Eam1104I	CTCTTC	4 cut(s)	182, 187, 1392, 1578
EarI	CTCTTC	4 cut(s)	182, 187, 1392, 1578
Ecl136II	GAGCTC	1 cut(s)	1732
Eco130I	CCWWGG	3 cut(s)	135, 1197, 1581
Eco24I	GRGCYC	1 cut(s)	1734
Eco31I	GGTCTC	1 cut(s)	416
Eco32I	GATATC	2 cut(s)	2053, 2245
Eco47I	GGWCC	5 cut(s)	731, 809, 1135, 1628, 2005
Eco53kI	GAGCTC	1 cut(s)	1732
Eco57I	CTGAAG	1 cut(s)	19
Eco81I	CCTNAGG	2 cut(s)	275, 854
Eco88I	CYCGRG	2 cut(s)	1008, 2326
EcoICRI	GAGCTC	1 cut(s)	1732
EcoO109I	RGGNCCY	2 cut(s)	1135, 1628
EcoRII	CCWGG	6 cut(s)	456, 736, 1555, 1900, 2256, 2280
EcoRV	GATATC	2 cut(s)	2053, 2245
EcoT14I	CCWWGG	3 cut(s)	135, 1197, 1581
EcoT22I	ATGCAT	1 cut(s)	1265
EcoT38I	GRGCYC	1 cut(s)	1734
ErhI	CCWWGG	3 cut(s)	135, 1197, 1581
FalI	AAGNNNNNCTT	8 cut(s)	17, 49, 435, 467, 1363, 1395, 1958, 1990
FaqI	GGGAC	2 cut(s)	991, 1641
FauI	CCCGC	1 cut(s)	1958
FbaI	TGATCA	1 cut(s)	174
Fnu4HI	GCNGC	5 cut(s)	662, 1233, 1251, 2190, 2334
FriOI	GRGCYC	1 cut(s)	1734
Fsp4HI	GCNGC	5 cut(s)	662, 1233, 1251, 2190, 2334
FspBI	CTAG	1 cut(s)	1229
GlaI	GCGC	3 cut(s)	316, 888, 2332
GluI	GCNGC	5 cut(s)	662, 1233, 1251, 2190, 2334
GsaI	CCCAGC	2 cut(s)	131, 979
GsuI	CTGGAG	4 cut(s)	131, 516, 855, 1797
HaeII	RGCGCY	1 cut(s)	2334
HaeIII	GGCC	4 cut(s)	1552, 1580, 1667, 1859
HapII	CCGG	5 cut(s)	434, 744, 783, 1061, 1496
HgaI	GACGC	1 cut(s)	1115
HhaI	GCGC	3 cut(s)	317, 889, 2333
Hin1I	GRCGYC	2 cut(s)	1126, 1906
Hin6I	GCGC	3 cut(s)	315, 887, 2331
HinP1I	GCGC	3 cut(s)	315, 887, 2331
HindIII	AAGCTT	2 cut(s)	861, 1163
HinfI	GANTC	9 cut(s)	643, 917, 943, 985, 1736, 1772, 1946, 2140, 2204
HpaII	CCGG	5 cut(s)	434, 744, 783, 1061, 1496
Hpy166II	GTNNAC	2 cut(s)	343, 2005
Hpy188I	TCNGA	6 cut(s)	642, 669, 1268, 2093, 2179, 2347
Hpy8I	GTNNAC	2 cut(s)	343, 2005
HpyAV	CCTTC	5 cut(s)	22, 55, 365, 564, 1389
HpyCH4III	ACNGT	7 cut(s)	169, 521, 1052, 1399, 1474, 1843, 2032
HpyCH4IV	ACGT	1 cut(s)	1906
HpyF10VI	GCNNNNNNNGC	5 cut(s)	670, 679, 1149, 1229, 2375
HpySE526I	ACGT	1 cut(s)	1906
Hsp92I	GRCGYC	2 cut(s)	1126, 1906
HspAI	GCGC	3 cut(s)	315, 887, 2331
Kpn2I	TCCGGA	1 cut(s)	1495
Ksp22I	TGATCA	1 cut(s)	174
Kzo9I	GATC	8 cut(s)	174, 375, 448, 1225, 1912, 2181, 2342, 2347
LguI	GCTCTTC	1 cut(s)	1392
LmnI	GCTCC	7 cut(s)	70, 150, 535, 931, 1711, 2226, 2297
Lsp1109I	GCAGC	5 cut(s)	648, 1219, 1237, 2201, 2320
MaeI	CTAG	1 cut(s)	1229
MaeII	ACGT	1 cut(s)	1906
MaeIII	GTNAC	4 cut(s)	161, 1336, 1417, 1521
MalI	GATC	8 cut(s)	176, 377, 450, 1227, 1914, 2183, 2344, 2349
MboI	GATC	8 cut(s)	174, 375, 448, 1225, 1912, 2181, 2342, 2347
MfeI	CAATTG	2 cut(s)	366, 1916
MflI	RGATCY	1 cut(s)	2342
MhlI	GDGCHC	2 cut(s)	1015, 1734
MlsI	TGGCCA	1 cut(s)	1580
MluCI	AATT	7 cut(s)	366, 650, 756, 1502, 1511, 1680, 1916
MluNI	TGGCCA	1 cut(s)	1580
MlyI	GAGTC	2 cut(s)	937, 979
MmeI	TCCRAC	2 cut(s)	142, 2320
Mox20I	TGGCCA	1 cut(s)	1580
Mph1103I	ATGCAT	1 cut(s)	1265
MroI	TCCGGA	1 cut(s)	1495
MroXI	GAANNNNTTC	1 cut(s)	32
MscI	TGGCCA	1 cut(s)	1580
MseI	TTAA	4 cut(s)	489, 687, 755, 1452
MslI	CAYNNNNRTG	3 cut(s)	1025, 1212, 1258
Msp20I	TGGCCA	1 cut(s)	1580
MspA1I	CMGCKG	1 cut(s)	682
MspI	CCGG	5 cut(s)	434, 744, 783, 1061, 1496
MspR9I	CCNGG	9 cut(s)	434, 458, 738, 784, 1061, 1557, 1902, 2258, 2282
MunI	CAATTG	2 cut(s)	366, 1916
Mva1269I	GAATGC	3 cut(s)	788, 889, 1143
MvaI	CCWGG	6 cut(s)	458, 738, 1557, 1902, 2258, 2282
MvnI	CGCG	1 cut(s)	648
MwoI	GCNNNNNNNGC	5 cut(s)	670, 679, 1149, 1229, 2375
NciI	CCSGG	3 cut(s)	434, 784, 1061
NcoI	CCATGG	1 cut(s)	135
NdeII	GATC	8 cut(s)	174, 375, 448, 1225, 1912, 2181, 2342, 2347
NlaIV	GGNNCC	6 cut(s)	66, 237, 742, 1629, 1858, 2315
NmuCI	GTSAC	2 cut(s)	161, 1521
NruI	TCGCGA	1 cut(s)	648
NsiI	ATGCAT	1 cut(s)	1265
NspI	RCATGY	2 cut(s)	231, 1019
PciI	ACATGT	2 cut(s)	227, 1015
PciSI	GCTCTTC	1 cut(s)	1392
PcsI	WCGNNNNNNNCGW	1 cut(s)	1903
PctI	GAATGC	3 cut(s)	788, 889, 1143
PdmI	GAANNNNTTC	1 cut(s)	32
PfeI	GAWTC	7 cut(s)	643, 917, 1736, 1772, 1946, 2140, 2204
PflFI	GACNNNGTC	1 cut(s)	167
PfoI	TCCNGGA	3 cut(s)	736, 1555, 1900
PkrI	GCNGC	5 cut(s)	663, 1234, 1252, 2191, 2335
PleI	GAGTC	2 cut(s)	937, 979
PpsI	GAGTC	2 cut(s)	937, 979
PpuMI	RGGWCCY	2 cut(s)	1135, 1628
PscI	ACATGT	2 cut(s)	227, 1015
PshAI	GACNNNNGTC	1 cut(s)	1003
Psp124BI	GAGCTC	1 cut(s)	1734
Psp5II	RGGWCCY	2 cut(s)	1135, 1628
Psp6I	CCWGG	6 cut(s)	456, 736, 1555, 1900, 2256, 2280
PspFI	CCCAGC	2 cut(s)	127, 975
PspGI	CCWGG	6 cut(s)	456, 736, 1555, 1900, 2256, 2280
PspN4I	GGNNCC	6 cut(s)	66, 237, 742, 1629, 1858, 2315
PspPI	GGNCC	7 cut(s)	731, 809, 1135, 1550, 1628, 1857, 2005
PspPPI	RGGWCCY	2 cut(s)	1135, 1628
PsuI	RGATCY	1 cut(s)	2342
PsyI	GACNNNGTC	1 cut(s)	167
PvuII	CAGCTG	1 cut(s)	682
RruI	TCGCGA	1 cut(s)	648
RsaI	GTAC	2 cut(s)	518, 2255
RsaNI	GTAC	2 cut(s)	517, 2254
RseI	CAYNNNNRTG	3 cut(s)	1025, 1212, 1258
SacI	GAGCTC	1 cut(s)	1734
SapI	GCTCTTC	1 cut(s)	1392
SaqAI	TTAA	4 cut(s)	489, 687, 755, 1452
SatI	GCNGC	5 cut(s)	662, 1233, 1251, 2190, 2334
Sau3AI	GATC	8 cut(s)	174, 375, 448, 1225, 1912, 2181, 2342, 2347
Sau96I	GGNCC	7 cut(s)	731, 809, 1135, 1550, 1628, 1857, 2005
ScaI	AGTACT	1 cut(s)	518
SchI	GAGTC	2 cut(s)	937, 979
ScrFI	CCNGG	9 cut(s)	434, 458, 738, 784, 1061, 1557, 1902, 2258, 2282
SduI	GDGCHC	2 cut(s)	1015, 1734
SfcI	CTRYAG	3 cut(s)	93, 354, 1587
SinI	GGWCC	5 cut(s)	731, 809, 1135, 1628, 2005
SmiMI	CAYNNNNRTG	3 cut(s)	1025, 1212, 1258
SmlI	CTYRAG	2 cut(s)	1130, 1975
SmoI	CTYRAG	2 cut(s)	1130, 1975
Sse9I	AATT	7 cut(s)	366, 650, 756, 1502, 1511, 1680, 1916
SsiI	CCGC	8 cut(s)	42, 55, 430, 1141, 1563, 1951, 2187, 2248
SspI	AATATT	1 cut(s)	1962
SspMI	CTAG	1 cut(s)	1229
SstI	GAGCTC	1 cut(s)	1734
StyD4I	CCNGG	9 cut(s)	432, 456, 736, 782, 1059, 1555, 1900, 2256, 2280
StyI	CCWWGG	3 cut(s)	135, 1197, 1581
TaaI	ACNGT	7 cut(s)	169, 521, 1052, 1399, 1474, 1843, 2032
TaiI	ACGT	1 cut(s)	1909
TaqI	TCGA	6 cut(s)	5, 84, 1098, 1179, 1686, 1734
TasI	AATT	7 cut(s)	366, 650, 756, 1502, 1511, 1680, 1916
TatI	WGTACW	1 cut(s)	516
TfiI	GAWTC	7 cut(s)	643, 917, 1736, 1772, 1946, 2140, 2204
Tru1I	TTAA	4 cut(s)	489, 687, 755, 1452
Tru9I	TTAA	4 cut(s)	489, 687, 755, 1452
TscAI	CASTG	5 cut(s)	317, 385, 2047, 2062, 2326
TseFI	GTSAC	2 cut(s)	161, 1521
TseI	GCWGC	5 cut(s)	661, 1232, 1250, 2189, 2333
Tsp45I	GTSAC	2 cut(s)	161, 1521
TspRI	CASTG	5 cut(s)	317, 385, 2047, 2062, 2326
Tth111I	GACNNNGTC	1 cut(s)	167
VpaK11BI	GGWCC	5 cut(s)	731, 809, 1135, 1628, 2005
XapI	RAATTY	3 cut(s)	1502, 1511, 1680
XceI	RCATGY	2 cut(s)	231, 1019
XcmI	CCANNNNNNNNNTGG	2 cut(s)	155, 1361
XmnI	GAANNNNTTC	1 cut(s)	32
XspI	CTAG	1 cut(s)	1229
ZraI	GACGTC	1 cut(s)	1907
ZrmI	AGTACT	1 cut(s)	518
Zsp2I	ATGCAT	1 cut(s)	1265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.